Tomato leaf curl Toliara virus
Basic Information
Genus |
Begomovirus
|
NCBI Assembly |
GCF_002987065.1 |
Isolate |
Madagascar:Menabe, Miandrivazo |
Release date |
2018/8/26 |
Submitter |
Lefeuvre,P., Martin,D.P., Hoareau,M., Naze,F., Becker,N., Delatte,H., Reynaud,B., Lett,J.M. |
Host |
|
Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGCCCCCGAAAAAGCGTGGGCCCCCTTGAACTGCACGGAGCCAATCACACTTCGCGTATGATGCTTATTTAAACTCCTTGTCGACCAAGGAGTCTTTATATTTGTCTTTTTTTGCATTTAAACCGCAATCATGTGGGATCCACTTCTTAACGATTTTCCAGAAACTGTTCACGGTTTCCGTTGTATGTTAGCTATTAAATATTTGCAGGCTGTAGAGAAACAGTACGAGCCAGGTACGTTAGGGTTCGAGTTAATTCGTGATTTAATTGTCGTTCTCAGGACGAAGAATTATGTCGAAGCGACCTGCCGATATAGTAATTTCCACTCCCGCGTCCAAGGTGCGTCGCCGGTTGAACTTCGACAGCCCATACTTGAGCCGTGCTGCTGCCCCCACTGTCCTCGTCACAAACAAACGGCGAGCATGGGTCAACAGGCCCATGTACCGAAAGCCCAGGATGTACCGGATGTACAAAAATCCTGATGTCCCTAGGGGCTGTGAAGGCCCGTGTAAGATCCAGTCTTACGAACAACGTGATGACGTGAAGCATGTTGGTGTGGTTAGGTGTATTAGTGATATTACTAAGGGTCCTGGTTTGACCCATAGGACCGGTAAACGTTTTGTTGTTAAGTCTGTTTATATATTAGGTAAAGTTTGGATGGATGAAAACATTAAGAAGCAGAATCACACGAACAATGTGATGTTTTTCCTGGTTAGAGATAGGAGGCCTTATGGCCCGAGTCCAATGGACTTTGGGCAGGTGTTTAATATGTTTGACAATGAGCCCAGCACAGCAACGGTGAAGAACGATTTTAGGGATCGTTTCCAAGTTTTAAGGAAATTCACTGCTACTGTTGTTGGTGGACCTTCTGGTTTGAAGGAACAGGCCTTGGTAAAGCGATTCTTCAGGCTCAACAGCCATGTGACGTATAATCATCAAGAAGCTGCTAAGTATGAGAACCATACGGAGAATGCTTTGTTGTTGTATATGGCATGTACTCATGCTTCTAATCCAGTGTATGCTACTCTTAAAATACGTGTGTATTTCTACGATTCTGTAACAAATTAATAAAGTTTATATTTTATATCATAATTTTGTTCCACCCATAAGGTTTCGTTGATTACATCAAACAATACATAATCTATTGCTCTAATTACATTATTAATTGAAATTACACCAAGATTGTTTAAATATTTACTAACTTGAGTCTTAAAGACTCTTAAGAAATGACCAGTCTGAGGCTGTAAGGTCGTCCAGATCTTGAAGGTCATGAAACATTTGTGAATCCCCAGTTCCTTCCTTAGGTTGTGGTTGAATCGGAGTTGTACTGTGATTATGTCGTGGTTGTAGTTGAATGGTCTCTTCGAGTGTTCCGTGATGCTGAAATATAGGGGATTGGCGATTTCCCAGGTATAGACGCCACTCTGTGCCTGATGCGCAGTGATGAGTTCCCCGGTGCGTGAATCCATTGTTGCGACAGTTGAGTGACAAGTAGTACGAGCACCCGCAATTAAGGTCTATCCTCTTCCTCCTCTGAAGCCTCTGCTTGGCTGCTCTGTGTTGGACCTTGATAGGAACTTGAGTACAATGGCTGTTGGATGGTGACGAAGATCGCATTCTTAATTGCCCAGGCCTTTAGTGGTGCGTTCTTTTGCTCGTCCAAGTACTCTTTATATGATGAAGTGGGTCCTGGATTGCAGAGGAAGATTGTCGGGATACCTCCTTTAATTTGAATTGGTTTCCCGTACTTTGTGTTGCTTTGCCAGTCCCGTTGTGCGCCCATGAATTCCTTAAAGTGCTTTAGATAATGAGGATCGACGTCATCTATTACGTTGTACCATGCTTCATTTGAATACACCTTTGGACTAAGATCAAGATGACCACACAAATAATTGTGTGGACCCAATGACCTAGCCCACATTGTCTTCCCGGTACGACTATCCCCTTCAATCACAATACTTATGGGTCTCAATGGCCGCGCAGCGGCACTGACAACATTCTCCGCCGCCCACTCTTCAAGTTCTTCCGGAACTTGATCGAAAGAAGAACATAAAAAAGGAGAAACATAATCCTCCAACGGAGGTGTAAAAATCCTATCTAAATTACATTTTAAATTATGATACTGAAAAATAAAATCTTTAGGGAGTTTCTCTTTAATAATAGCCATAGCGGCTTCAGCGGAACCTGCGTTTAATGCCTCGGCGCATGCGTCGTTAGCATTCTGGCAGCCTCCTCTAGCACTTCTGCCGTCGATCTGGAATTCACCCCATTCAAGTGTGTCTCCATCCTTGTCGATGTAGGACTTGACGTCGGAGCTTGATTTAGCTCCCTGAATGTTTGGATGGAAATGTGCTGACCTGGTTGGGGATACCAGGTCGAAGAATCGGTTATTCGTGCAGTGGAATTTGCCCTCGAACTGGATGAGCATGTGGAGATGAGGCTCCCCATCTTCGTGCAACTCTCTGCAGATTTTGATGAATCTTTTATTTGTTGGAGTATCTATATTTAATAATTGGGAAAGTGCTTCTTCTTTAGTTAAATTGCATTTGGGATAAGTAAGGAAATAATTTTTGGCTTGTATTTTAAAACGACGTGGCCGAGCCATTTGGTCAAGTGTCTCCAATTGACTTCTCATTTGCATCTCTCTGATATATTGGGGACAATATATAGTGTCTCCAAATGGCAATATGGTAATAACAAGAAGTTACTTTAACTTTATTTCAAATTGGTAAAGCGGCCATCCGTCTAATATT
Gene Information
NCBI Accession
|
YP_009508206.1
|
Location
|
143-493 |
Gene Name
|
v2 |
Protein Name
|
V2 protein |
Coding Region
|
ATGTGGGATCCACTTCTTAACGATTTTCCAGAAACTGTTCACGGTTTCCGTTGTATGTTAGCTATTAAATATTTGCAGGCTGTAGAGAAACAGTACGAGCCAGGTACGTTAGGGTTCGAGTTAATTCGTGATTTAATTGTCGTTCTCAGGACGAAGAATTATGTCGAAGCGACCTGCCGATATAGTAATTTCCACTCCCGCGTCCAAGGTGCGTCGCCGGTTGAACTTCGACAGCCCATACTTGAGCCGTGCTGCTGCCCCCACTGTCCTCGTCACAAACAAACGGCGAGCATGGGTCAACAGGCCCATGTACCGAAAGCCCAGGATGTACCGGATGTACAAAAATCCTGA |
Protein Sequence
|
MWDPLLNDFPETVHGFRCMLAIKYLQAVEKQYEPGTLGFELIRDLIVVLRTKNYVEATCRYSNFHSRVQGASPVELRQPILEPCCCPHCPRHKQTASMGQQAHVPKAQDVPDVQKS |
NCBI Accession
|
YP_009508207.1
|
Location
|
303-1079 |
Gene Name
|
cp |
Protein Name
|
coat protein |
Coding Region
|
ATGTCGAAGCGACCTGCCGATATAGTAATTTCCACTCCCGCGTCCAAGGTGCGTCGCCGGTTGAACTTCGACAGCCCATACTTGAGCCGTGCTGCTGCCCCCACTGTCCTCGTCACAAACAAACGGCGAGCATGGGTCAACAGGCCCATGTACCGAAAGCCCAGGATGTACCGGATGTACAAAAATCCTGATGTCCCTAGGGGCTGTGAAGGCCCGTGTAAGATCCAGTCTTACGAACAACGTGATGACGTGAAGCATGTTGGTGTGGTTAGGTGTATTAGTGATATTACTAAGGGTCCTGGTTTGACCCATAGGACCGGTAAACGTTTTGTTGTTAAGTCTGTTTATATATTAGGTAAAGTTTGGATGGATGAAAACATTAAGAAGCAGAATCACACGAACAATGTGATGTTTTTCCTGGTTAGAGATAGGAGGCCTTATGGCCCGAGTCCAATGGACTTTGGGCAGGTGTTTAATATGTTTGACAATGAGCCCAGCACAGCAACGGTGAAGAACGATTTTAGGGATCGTTTCCAAGTTTTAAGGAAATTCACTGCTACTGTTGTTGGTGGACCTTCTGGTTTGAAGGAACAGGCCTTGGTAAAGCGATTCTTCAGGCTCAACAGCCATGTGACGTATAATCATCAAGAAGCTGCTAAGTATGAGAACCATACGGAGAATGCTTTGTTGTTGTATATGGCATGTACTCATGCTTCTAATCCAGTGTATGCTACTCTTAAAATACGTGTGTATTTCTACGATTCTGTAACAAATTAA |
Protein Sequence
|
MSKRPADIVISTPASKVRRRLNFDSPYLSRAAAPTVLVTNKRRAWVNRPMYRKPRMYRMYKNPDVPRGCEGPCKIQSYEQRDDVKHVGVVRCISDITKGPGLTHRTGKRFVVKSVYILGKVWMDENIKKQNHTNNVMFFLVRDRRPYGPSPMDFGQVFNMFDNEPSTATVKNDFRDRFQVLRKFTATVVGGPSGLKEQALVKRFFRLNSHVTYNHQEAAKYENHTENALLLYMACTHASNPVYATLKIRVYFYDSVTN |
NCBI Accession
|
YP_009508208.1
|
Location
|
1076-1480 |
Gene Name
|
c3 |
Protein Name
|
C3 protein |
Coding Region
|
ATGGATTCACGCACCGGGGAACTCATCACTGCGCATCAGGCACAGAGTGGCGTCTATACCTGGGAAATCGCCAATCCCCTATATTTCAGCATCACGGAACACTCGAAGAGACCATTCAACTACAACCACGACATAATCACAGTACAACTCCGATTCAACCACAACCTAAGGAAGGAACTGGGGATTCACAAATGTTTCATGACCTTCAAGATCTGGACGACCTTACAGCCTCAGACTGGTCATTTCTTAAGAGTCTTTAAGACTCAAGTTAGTAAATATTTAAACAATCTTGGTGTAATTTCAATTAATAATGTAATTAGAGCAATAGATTATGTATTGTTTGATGTAATCAACGAAACCTTATGGGTGGAACAAAATTATGATATAAAATATAAACTTTATTAA |
Protein Sequence
|
MDSRTGELITAHQAQSGVYTWEIANPLYFSITEHSKRPFNYNHDIITVQLRFNHNLRKELGIHKCFMTFKIWTTLQPQTGHFLRVFKTQVSKYLNNLGVISINNVIRAIDYVLFDVINETLWVEQNYDIKYKLY |
NCBI Accession
|
YP_009508209.1
|
Location
|
1221-1628 |
Gene Name
|
c2 |
Protein Name
|
C2 protein |
Coding Region
|
ATGCGATCTTCGTCACCATCCAACAGCCATTGTACTCAAGTTCCTATCAAGGTCCAACACAGAGCAGCCAAGCAGAGGCTTCAGAGGAGGAAGAGGATAGACCTTAATTGCGGGTGCTCGTACTACTTGTCACTCAACTGTCGCAACAATGGATTCACGCACCGGGGAACTCATCACTGCGCATCAGGCACAGAGTGGCGTCTATACCTGGGAAATCGCCAATCCCCTATATTTCAGCATCACGGAACACTCGAAGAGACCATTCAACTACAACCACGACATAATCACAGTACAACTCCGATTCAACCACAACCTAAGGAAGGAACTGGGGATTCACAAATGTTTCATGACCTTCAAGATCTGGACGACCTTACAGCCTCAGACTGGTCATTTCTTAAGAGTCTTTAA |
Protein Sequence
|
MRSSSPSNSHCTQVPIKVQHRAAKQRLQRRKRIDLNCGCSYYLSLNCRNNGFTHRGTHHCASGTEWRLYLGNRQSPIFQHHGTLEETIQLQPRHNHSTTPIQPQPKEGTGDSQMFHDLQDLDDLTASDWSFLKSL |
NCBI Accession
|
YP_009508210.1
|
Location
|
1522-2652 |
Gene Name
|
rep |
Protein Name
|
replication associated protein |
Coding Region
|
ATGCAAATGAGAAGTCAATTGGAGACACTTGACCAAATGGCTCGGCCACGTCGTTTTAAAATACAAGCCAAAAATTATTTCCTTACTTATCCCAAATGCAATTTAACTAAAGAAGAAGCACTTTCCCAATTATTAAATATAGATACTCCAACAAATAAAAGATTCATCAAAATCTGCAGAGAGTTGCACGAAGATGGGGAGCCTCATCTCCACATGCTCATCCAGTTCGAGGGCAAATTCCACTGCACGAATAACCGATTCTTCGACCTGGTATCCCCAACCAGGTCAGCACATTTCCATCCAAACATTCAGGGAGCTAAATCAAGCTCCGACGTCAAGTCCTACATCGACAAGGATGGAGACACACTTGAATGGGGTGAATTCCAGATCGACGGCAGAAGTGCTAGAGGAGGCTGCCAGAATGCTAACGACGCATGCGCCGAGGCATTAAACGCAGGTTCCGCTGAAGCCGCTATGGCTATTATTAAAGAGAAACTCCCTAAAGATTTTATTTTTCAGTATCATAATTTAAAATGTAATTTAGATAGGATTTTTACACCTCCGTTGGAGGATTATGTTTCTCCTTTTTTATGTTCTTCTTTCGATCAAGTTCCGGAAGAACTTGAAGAGTGGGCGGCGGAGAATGTTGTCAGTGCCGCTGCGCGGCCATTGAGACCCATAAGTATTGTGATTGAAGGGGATAGTCGTACCGGGAAGACAATGTGGGCTAGGTCATTGGGTCCACACAATTATTTGTGTGGTCATCTTGATCTTAGTCCAAAGGTGTATTCAAATGAAGCATGGTACAACGTAATAGATGACGTCGATCCTCATTATCTAAAGCACTTTAAGGAATTCATGGGCGCACAACGGGACTGGCAAAGCAACACAAAGTACGGGAAACCAATTCAAATTAAAGGAGGTATCCCGACAATCTTCCTCTGCAATCCAGGACCCACTTCATCATATAAAGAGTACTTGGACGAGCAAAAGAACGCACCACTAAAGGCCTGGGCAATTAAGAATGCGATCTTCGTCACCATCCAACAGCCATTGTACTCAAGTTCCTATCAAGGTCCAACACAGAGCAGCCAAGCAGAGGCTTCAGAGGAGGAAGAGGATAGACCTTAA |
Protein Sequence
|
MQMRSQLETLDQMARPRRFKIQAKNYFLTYPKCNLTKEEALSQLLNIDTPTNKRFIKICRELHEDGEPHLHMLIQFEGKFHCTNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYIDKDGDTLEWGEFQIDGRSARGGCQNANDACAEALNAGSAEAAMAIIKEKLPKDFIFQYHNLKCNLDRIFTPPLEDYVSPFLCSSFDQVPEELEEWAAENVVSAAARPLRPISIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNEAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLDEQKNAPLKAWAIKNAIFVTIQQPLYSSSYQGPTQSSQAEASEEEEDRP |
NCBI Accession
|
YP_009508211.1
|
Location
|
2202-2459 |
Gene Name
|
c4 |
Protein Name
|
C4 protein |
Coding Region
|
ATGGGGAGCCTCATCTCCACATGCTCATCCAGTTCGAGGGCAAATTCCACTGCACGAATAACCGATTCTTCGACCTGGTATCCCCAACCAGGTCAGCACATTTCCATCCAAACATTCAGGGAGCTAAATCAAGCTCCGACGTCAAGTCCTACATCGACAAGGATGGAGACACACTTGAATGGGGTGAATTCCAGATCGACGGCAGAAGTGCTAGAGGAGGCTGCCAGAATGCTAACGACGCATGCGCCGAGGCATTAA |
Protein Sequence
|
MGSLISTCSSSSRANSTARITDSSTWYPQPGQHISIQTFRELNQAPTSSPTSTRMETHLNGVNSRSTAEVLEEAARMLTTHAPRH |