Tomato leaf curl purple vein virus
Basic Information
Genus |
Begomovirus
|
NCBI Assembly |
GCF_002270925.1 |
Isolate |
Brazil |
Release date |
2017/8/26 |
Submitter |
Macedo,M.A., Albuquerque,L., Souza,J., Maliano,M., Rojas,M., Gilbertson,R., Inoue Nagata,A. |
Host |
|
Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGCCCCCGACCCGCTCCCGTGATTTGCGGCGCTTTGTCGTTTAAAAGTGGTCCCCACGCTGAAAACGACAAAATTGAACATCCAATCATAATTGAGCCTGAAAGCTTAGATATTTGAAATAGTCCTTGGTGGCTACGTTTGTACCTGTATAAAAAGACGAACGTCATACGGTCCCATCAGGCTTTAACTCAAAATGAGTAAGCGGGCAGCCCCATGGCGTTCCTTCGCGGGAATGTCAAAGGTACAGCGCTCCCTCAATTTTTCTCCTCGTTCGGGAACTGGGCCGAAATTAGACAGTCGGTCTGCTTGGGTCAACAGGCCCATGTATAGGAAGCCCAGGATCTATCGGACTTTGAGAAGTCCGGATGTTCCCAAGGGGTGTGAAGGCCCTTGCAAGGTCCAGTCCTATGAACAGAGGCATGATATCTCTCACGTGGGGAAGGTCATGTGCATCTCTGACGTGACGCGTGGGAATGGCATTACCCACCGCGTGGGTAAGAGGTTCTGCGTGAAGTCTGTGTACATATTAGGGAAGGTGTGGATGGACGAGAATATCAAGCTGAAGAATCACACGAACAGTGTGATGTTCTGGCTTGTCAGAGACAGGAGACCCTATGGAACGCCCATGGACTTTGGGCAGGTGTTCAACATGTTCGACAATGAGCCCAGTACTGCCACCGTGAAGAACGATCTCCGTGATCGTTTTCAGGTTCTGCACAAGTTCTACTCGAAGGTTACCGGTGGACAATATGCCAGCAACGAGCAGGCCCTGGTACGGCGTTTTTGGAGGGTGAACACCCATGTGACCTACAACCACCAGGAGGCCGCGAAGTACGAGAACCACACGGAGAATGCCCTCTTATTGTATATGGCATGTACTCATGCCTCTAACCCTGTGTATGCTACTCTCAAGATACGGATCTATTTTTATGATTCGATATCTAATTAATAAATATTATATTTTATTGAATGATTTTCGAGTACATGATTTACATACACTCTGTCCGTAGCAAACCTAACGGCTCTAATTACATTATTAATTGAAATGACTCCTAACTGATCTAAGTACAATAAAACTAAAAATCTAAATCTACTTAAATAAATCGTCCCAGAAGCCGTCAGATAACTGGTCCAGACTTGGAAGTTGAGGAAGGCTTTGTGGAGATCCAACGCTTTCCTCAGGTTGTGGTTGAACCGTATTTGGATGTGGTAGATCCTGGTTGTTGTGTAGAGTGGATCCTCCACGTGTGTTATCTTGAAATACAGGGGATTGCTGAGCTGCCAGATAAACACGCCATTCTCTGCCTGAGGTGCAGTGATGAGTTCCCCTGTGCGTGAATCCATTGTTGTGGCAGTTGATGTGTACGAATATGGAACACCCGCAGTTCAGATCTATCCTTCTCCTCCTAATCGCCCTCTTCTTGGCCGCCCTGTGATGGACTTTGATAGAGGGGGGAGTCGAGGAAGATGAATTTAGCATTATGGAGGGTCCAGTTCTTTAGAGAAACATTCTCTTGTTTCTCCAAAAAGTCCTTATAACTAGACCCTTCTCCTGGATTGCAGAGCACGATTGAGGGTATCCCTCCTTTAATTTGAACTGGCTTGCCGTATTTACAATTTGACTGCCAGTCCCTTTGGGCCCCAATCAGCTCTTTCCAGTGCTTCATCTTTAAATATTGCGGAGTGACGTCATCAATGACGTTATACTCCGCATCATTTGAGTAAACCCTAGAATTGAAATCCAGGTGTCCACTCAAATAATTGTGGGATCCTAGAGAACGGGCCCACATCGTCTTCCCCGTCCTTGAATCACCCTCGATGATTATACTAATAGGTCTTTCTGGCCGCGCAGCGGCATCCCTACCCAAATAATCATCAGCCCACTCTTGCATCTCCTCCGGAACGTTAGTGAAGGAGGAGAGGGGAAACGGAGGAGCCCAAGGCTCCGGAGCCTTCTGGAAAATGCGTTGCGCATTTGCCACGAGGTTGTGGTGTTGGAGGAAGAAGTGTTGTGGTTGTTCCTCCTTTATTATTTGGAGGGCTTCTTCTGCTGACGATGCATTTAACGCCTTGGCATATGTATCGTTAGCTGTCTGTTGACCTCCTCGAGCAGATCTTCCGTCGATCTGAAAATCACCCCACTCGACGTAATCTCCGTCCTTCTCAATGTATGATTTGGCGTCTGAGGAGGACTTGCAAGATTCGTATTTTCCATGACAAACATTGGAATTACTGGGATGTCGCAAGTCGAAGAATCTGCAATTCGTGCAGACGAACTTGGCTTCGAATTGCAGCAGGGCATGCAGATGAGGTTCCCCATTATCATGTAGCTCTCTGCAGACTCTGATATATTTTTTGTTGACTGGGGTTTCTAGGGCTTGCAATTGGGAAAGTGCCTCTTCTTTCGAAATAGAGCATTTGGGATAAGTGAGGAAATAGTTTTTGGAAGAAATACGGAATCGTTTTGGTGGTGGCATTTTTGTAATAACAAGGGTGTCACCGATTGAGATTCAGGTAAACTTGCGGAATGAATTGGTGACTAGTGACAATTTATAGTAGAATCCTCAATAGAACTCCGAATCATGTTCGCACACGTGGCGGCCATCCGTATAATATT
Gene Information
NCBI Accession
|
YP_009408629.1
|
Location
|
206-961 |
Gene Name
|
CP |
Protein Name
|
coat protein |
Coding Region
|
ATGAGTAAGCGGGCAGCCCCATGGCGTTCCTTCGCGGGAATGTCAAAGGTACAGCGCTCCCTCAATTTTTCTCCTCGTTCGGGAACTGGGCCGAAATTAGACAGTCGGTCTGCTTGGGTCAACAGGCCCATGTATAGGAAGCCCAGGATCTATCGGACTTTGAGAAGTCCGGATGTTCCCAAGGGGTGTGAAGGCCCTTGCAAGGTCCAGTCCTATGAACAGAGGCATGATATCTCTCACGTGGGGAAGGTCATGTGCATCTCTGACGTGACGCGTGGGAATGGCATTACCCACCGCGTGGGTAAGAGGTTCTGCGTGAAGTCTGTGTACATATTAGGGAAGGTGTGGATGGACGAGAATATCAAGCTGAAGAATCACACGAACAGTGTGATGTTCTGGCTTGTCAGAGACAGGAGACCCTATGGAACGCCCATGGACTTTGGGCAGGTGTTCAACATGTTCGACAATGAGCCCAGTACTGCCACCGTGAAGAACGATCTCCGTGATCGTTTTCAGGTTCTGCACAAGTTCTACTCGAAGGTTACCGGTGGACAATATGCCAGCAACGAGCAGGCCCTGGTACGGCGTTTTTGGAGGGTGAACACCCATGTGACCTACAACCACCAGGAGGCCGCGAAGTACGAGAACCACACGGAGAATGCCCTCTTATTGTATATGGCATGTACTCATGCCTCTAACCCTGTGTATGCTACTCTCAAGATACGGATCTATTTTTATGATTCGATATCTAATTAA |
Protein Sequence
|
MSKRAAPWRSFAGMSKVQRSLNFSPRSGTGPKLDSRSAWVNRPMYRKPRIYRTLRSPDVPKGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGITHRVGKRFCVKSVYILGKVWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATVKNDLRDRFQVLHKFYSKVTGGQYASNEQALVRRFWRVNTHVTYNHQEAAKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSISN |
NCBI Accession
|
YP_009408630.1
|
Location
|
539-814 |
Gene Name
|
AC5 |
Protein Name
|
AC5 |
Coding Region
|
ATGGGTGTTCACCCTCCAAAAACGCCGTACCAGGGCCTGCTCGTTGCTGGCATATTGTCCACCGGTAACCTTCGAGTAGAACTTGTGCAGAACCTGAAAACGATCACGGAGATCGTTCTTCACGGTGGCAGTACTGGGCTCATTGTCGAACATGTTGAACACCTGCCCAAAGTCCATGGGCGTTCCATAGGGTCTCCTGTCTCTGACAAGCCAGAACATCACACTGTTCGTGTGATTCTTCAGCTTGATATTCTCGTCCATCCACACCTTCCCTAA |
Protein Sequence
|
MGVHPPKTPYQGLLVAGILSTGNLRVELVQNLKTITEIVLHGGSTGLIVEHVEHLPKVHGRSIGSPVSDKPEHHTVRVILQLDILVHPHLP |
NCBI Accession
|
YP_009408631.1
|
Location
|
958-1356 |
Gene Name
|
REn |
Protein Name
|
replication enhancer protein |
Coding Region
|
ATGGATTCACGCACAGGGGAACTCATCACTGCACCTCAGGCAGAGAATGGCGTGTTTATCTGGCAGCTCAGCAATCCCCTGTATTTCAAGATAACACACGTGGAGGATCCACTCTACACAACAACCAGGATCTACCACATCCAAATACGGTTCAACCACAACCTGAGGAAAGCGTTGGATCTCCACAAAGCCTTCCTCAACTTCCAAGTCTGGACCAGTTATCTGACGGCTTCTGGGACGATTTATTTAAGTAGATTTAGATTTTTAGTTTTATTGTACTTAGATCAGTTAGGAGTCATTTCAATTAATAATGTAATTAGAGCCGTTAGGTTTGCTACGGACAGAGTGTATGTAAATCATGTACTCGAAAATCATTCAATAAAATATAATATTTATTAA |
Protein Sequence
|
MDSRTGELITAPQAENGVFIWQLSNPLYFKITHVEDPLYTTTRIYHIQIRFNHNLRKALDLHKAFLNFQVWTSYLTASGTIYLSRFRFLVLLYLDQLGVISINNVIRAVRFATDRVYVNHVLENHSIKYNIY |
NCBI Accession
|
YP_009408632.1
|
Location
|
1103-1492 |
Gene Name
|
TrAP |
Protein Name
|
transcriptional activator protein |
Coding Region
|
ATGCTAAATTCATCTTCCTCGACTCCCCCCTCTATCAAAGTCCATCACAGGGCGGCCAAGAAGAGGGCGATTAGGAGGAGAAGGATAGATCTGAACTGCGGGTGTTCCATATTCGTACACATCAACTGCCACAACAATGGATTCACGCACAGGGGAACTCATCACTGCACCTCAGGCAGAGAATGGCGTGTTTATCTGGCAGCTCAGCAATCCCCTGTATTTCAAGATAACACACGTGGAGGATCCACTCTACACAACAACCAGGATCTACCACATCCAAATACGGTTCAACCACAACCTGAGGAAAGCGTTGGATCTCCACAAAGCCTTCCTCAACTTCCAAGTCTGGACCAGTTATCTGACGGCTTCTGGGACGATTTATTTAAGTAG |
Protein Sequence
|
MLNSSSSTPPSIKVHHRAAKKRAIRRRRIDLNCGCSIFVHINCHNNGFTHRGTHHCTSGREWRVYLAAQQSPVFQDNTRGGSTLHNNQDLPHPNTVQPQPEESVGSPQSLPQLPSLDQLSDGFWDDLFK |
NCBI Accession
|
YP_009408633.1
|
Location
|
1419-2489 |
Gene Name
|
Rep |
Protein Name
|
replication protein |
Coding Region
|
ATGCCACCACCAAAACGATTCCGTATTTCTTCCAAAAACTATTTCCTCACTTATCCCAAATGCTCTATTTCGAAAGAAGAGGCACTTTCCCAATTGCAAGCCCTAGAAACCCCAGTCAACAAAAAATATATCAGAGTCTGCAGAGAGCTACATGATAATGGGGAACCTCATCTGCATGCCCTGCTGCAATTCGAAGCCAAGTTCGTCTGCACGAATTGCAGATTCTTCGACTTGCGACATCCCAGTAATTCCAATGTTTGTCATGGAAAATACGAATCTTGCAAGTCCTCCTCAGACGCCAAATCATACATTGAGAAGGACGGAGATTACGTCGAGTGGGGTGATTTTCAGATCGACGGAAGATCTGCTCGAGGAGGTCAACAGACAGCTAACGATACATATGCCAAGGCGTTAAATGCATCGTCAGCAGAAGAAGCCCTCCAAATAATAAAGGAGGAACAACCACAACACTTCTTCCTCCAACACCACAACCTCGTGGCAAATGCGCAACGCATTTTCCAGAAGGCTCCGGAGCCTTGGGCTCCTCCGTTTCCCCTCTCCTCCTTCACTAACGTTCCGGAGGAGATGCAAGAGTGGGCTGATGATTATTTGGGTAGGGATGCCGCTGCGCGGCCAGAAAGACCTATTAGTATAATCATCGAGGGTGATTCAAGGACGGGGAAGACGATGTGGGCCCGTTCTCTAGGATCCCACAATTATTTGAGTGGACACCTGGATTTCAATTCTAGGGTTTACTCAAATGATGCGGAGTATAACGTCATTGATGACGTCACTCCGCAATATTTAAAGATGAAGCACTGGAAAGAGCTGATTGGGGCCCAAAGGGACTGGCAGTCAAATTGTAAATACGGCAAGCCAGTTCAAATTAAAGGAGGGATACCCTCAATCGTGCTCTGCAATCCAGGAGAAGGGTCTAGTTATAAGGACTTTTTGGAGAAACAAGAGAATGTTTCTCTAAAGAACTGGACCCTCCATAATGCTAAATTCATCTTCCTCGACTCCCCCCTCTATCAAAGTCCATCACAGGGCGGCCAAGAAGAGGGCGATTAG |
Protein Sequence
|
MPPPKRFRISSKNYFLTYPKCSISKEEALSQLQALETPVNKKYIRVCRELHDNGEPHLHALLQFEAKFVCTNCRFFDLRHPSNSNVCHGKYESCKSSSDAKSYIEKDGDYVEWGDFQIDGRSARGGQQTANDTYAKALNASSAEEALQIIKEEQPQHFFLQHHNLVANAQRIFQKAPEPWAPPFPLSSFTNVPEEMQEWADDYLGRDAAARPERPISIIIEGDSRTGKTMWARSLGSHNYLSGHLDFNSRVYSNDAEYNVIDDVTPQYLKMKHWKELIGAQRDWQSNCKYGKPVQIKGGIPSIVLCNPGEGSSYKDFLEKQENVSLKNWTLHNAKFIFLDSPLYQSPSQGGQEEGD |
NCBI Accession
|
YP_009408634.1
|
Location
|
2075-2338 |
Gene Name
|
AC4 |
Protein Name
|
AC4 |
Coding Region
|
ATGATAATGGGGAACCTCATCTGCATGCCCTGCTGCAATTCGAAGCCAAGTTCGTCTGCACGAATTGCAGATTCTTCGACTTGCGACATCCCAGTAATTCCAATGTTTGTCATGGAAAATACGAATCTTGCAAGTCCTCCTCAGACGCCAAATCATACATTGAGAAGGACGGAGATTACGTCGAGTGGGGTGATTTTCAGATCGACGGAAGATCTGCTCGAGGAGGTCAACAGACAGCTAACGATACATATGCCAAGGCGTTAA |
Protein Sequence
|
MIMGNLICMPCCNSKPSSSARIADSSTCDIPVIPMFVMENTNLASPPQTPNHTLRRTEITSSGVIFRSTEDLLEEVNRQLTIHMPRR |