Tomato leaf curl Nigeria virus


Basic Information

Genus Begomovirus
NCBI Assembly GCF_000883635.1
Isolate Nigeria
Release date 2015/2/22
Submitter Kon,T., Rojas,M.R., Gilbertson,R.L.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_012206
ACCGGTGGGCGCGAAAAAAAAAAAAGTGGTCCCCTTACACGCTCGAAAGCAAAAGTAAAGAAATCAGTGGTCCCCGTCCACTAATAAATGTCAGCCAATCAGAATGAAGCCTGAAAGCTTTCTTATTTAGATTTTGTTTTTATATACTTCCTCGCCAAGTAGTTATTATTGCAACATGTGGGATCCATTATTGAACGAGTTCCCAGACTCGGTTCATGGTTTTCGTTGTATGCTGGGTATAAAATATCTACAGCTTTTAGAAGAGGAGTACGAGCCCAATACTTTGGGCCACGATTTAATTAGAGATCTCATATCTGTCATTCGGGCTAAGAATTATGTCGAAGCGACCCGGCGATATAATAATTTCCACGCCCGTCTCGAAGGTGCGTCGTCGTCTGAACTTCGACAGCCCCTACACCAGCCGTGCTGCTGTCCCCACTGTCCGAGGCATAAGCAAGCGTCGTTCGTGGACTTATCGGCCCATGTATCGAAAGCCCAGAATGTACCGGATGTTCAGAACCCCTGACATCCCTCGTGGATGTGAAGGCCCATGTAAGGTCCAGTCGTATGAGCAGAGAGATGATGTCAAGCACGTGGGTATAGTTCGATGTGTTAGTGATGTGACCCGTGGGTCCGGTCTGACTCATAGAGTAGGGAAGAGATTTTGCATTAAGTCTATTTATATATTAGGTAAAGTTTGGATGGACGAAAACATCAAGAAGCAGAATCATACTAACAATGTTATGTTTTTCTTAGTTCGTGATCGTAGGCCTTATGGCAGCCCAAGTGATTTTGGACAGATTTTTAACATGTTTGACAACGAGCCCAGTACAGCCACAATCAAGAATGATCTCAGAGACCGTTATCAAGTGCTGCGTAAATTCAGTGCTACTGTTATTGGTGGTCCCTCTGGATGCAAGGAACAGGCTTTAGTGAAGAGATTTTTTAAAGTAAACAATCATGTCGTTTATAATCATCAGGAGGAGGCTAAATATGCCAACCATACTGAGAATGCTTTGTTGTTGTATATGGCTTGTACTCATGCCTCTAATCCAGTGTATGCTACTCTGAAAATACGCATCTATTTCTACGATGCAGTTACGAATTAATAAATATTAAATTTTATTTCATGTGTTTCGACAACGTCGATTGTATTTACAAGAACGTTATACAGTACATGATCAACAGCTCTAATAATTGTATTAATTGAAATTACACCCAAATTATCTAAATACTTTAACACTTGAACCCTAAATACCCTTAAGAAACGACCAGTCTGAGGGCGTAAGCTCGTCCAGACTTTGAAGTTCAGAAAACACTTGTGAATCCCCAACGCCTTCCGCAGGTTGTGGTTGAACCTGATTTGTACTGTGATTATGTCGTGTTGGTAGTTGAACGGTCTCTCGTCGTGGTTGGTTATCTTGAAATACAGGGGATTTTGTATCTCCCAGATAAAAACGCCATTCCGAGCTTGATGCGCAGTGATGAGTTCCCCTGTGCGTGAATCCATGGTTACTGCAGTTAATATGTATGAAGTACGAGCACCCGCACTCTAAGTCCACTCTCTTACGCCTCACTACTTTCTTCTTCGCGATGCGGTGCTGGACTTTGATGGGCACTTGAGTAGAGTGGCTCGTTGAGGGTGACGAAGGTCGCATTTTTTATAGCCCAGGCTTTTAGTGATGCATTCTTTTCCTCGTCTAGATACTCTTTATATGATGATGTTGGACCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAATGGGCTTCCCGTACTTGGTGTTGCTTTGCCAGTCTCTTTGGGCCCCCATAAATTCTTTGAAGTGTTTGAGGTAATGGGGATCGACGTCATCAATGACGTTATACCAAGCATCATTTGAATACACCTTTGGGCTAAGATCAAGATGCCCACACAAGTAATTGTGTGGACCTAATGACCTAGCCCACATCGTCTTGCCGGTACGACTATCACCCTCAATAACAATACTATTCGGTCTCCATGGCCGCGCAGCGGCATCGCTCACATTCTCAGAGACCCACTCTTCAAGTTCTTCCGGAACTTGATTAAAAGAAGAACATAAAAAAGGAGAAACATAAGGAGCCGGAGGCTCCTGAAAAATTCTATCTAAATTATTATTTAAATTATGAAATTGTAATACAAAATCTTTGGGAGCTAATTCCCGTATAACCCTAAGAGCCTCTGCCTTACTTCCTGCGTTAAGCGCTGCGGCGTAAGCGTCATTGGCTGTCTGTTGCCCTCCTCTTGCAGATCTCCCATCGATCTGGAACTCTCCCCATTCGAGTGTATCTCCATCCTTGTCGATGTAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGTATGTTTGGATGGAAATGTGCTGACCTGGTTGGGGACACCAGGTCGAAGAATCTCTGATTTTGGCAGTTGTATTTGCCTTCGAACTGCAGAAGCACGTGAAGATGAGGCTGGCCATCCTCGTGAAGTTCTCTGCAGATCTTGATATATTTTTTATTCGTTGGGGTTTCTAGTTTTAGAAGTTGCTCTAGGGCTTCTTCTTTAGAAATAGAGCATTTTGGGAAAGTGAGGAAGTAGTTTTTGGAATTTATTCTAAATTTCTTTGGAGGAGCCATATGGTCAACTAGCACCAATTGACTGCCCTGGATACTTCTCCCCTGTTAATTGGGGTTCTATATATACTTAGCACCAAATGGCATAATGGTAATACTCCCAAAAAATTTGAACCCCCAAAGCGCCCACCGAATAATATT

Gene Information

NCBI Accession YP_002643045.1
Location 176-526
Gene Name V2
Protein Name pre-coat protein
Coding Region ATGTGGGATCCATTATTGAACGAGTTCCCAGACTCGGTTCATGGTTTTCGTTGTATGCTGGGTATAAAATATCTACAGCTTTTAGAAGAGGAGTACGAGCCCAATACTTTGGGCCACGATTTAATTAGAGATCTCATATCTGTCATTCGGGCTAAGAATTATGTCGAAGCGACCCGGCGATATAATAATTTCCACGCCCGTCTCGAAGGTGCGTCGTCGTCTGAACTTCGACAGCCCCTACACCAGCCGTGCTGCTGTCCCCACTGTCCGAGGCATAAGCAAGCGTCGTTCGTGGACTTATCGGCCCATGTATCGAAAGCCCAGAATGTACCGGATGTTCAGAACCCCTGA
Protein Sequence MWDPLLNEFPDSVHGFRCMLGIKYLQLLEEEYEPNTLGHDLIRDLISVIRAKNYVEATRRYNNFHARLEGASSSELRQPLHQPCCCPHCPRHKQASFVDLSAHVSKAQNVPDVQNP

NCBI Accession YP_002643046.1
Location 336-1109
Gene Name V1
Protein Name coat protein
Coding Region ATGTCGAAGCGACCCGGCGATATAATAATTTCCACGCCCGTCTCGAAGGTGCGTCGTCGTCTGAACTTCGACAGCCCCTACACCAGCCGTGCTGCTGTCCCCACTGTCCGAGGCATAAGCAAGCGTCGTTCGTGGACTTATCGGCCCATGTATCGAAAGCCCAGAATGTACCGGATGTTCAGAACCCCTGACATCCCTCGTGGATGTGAAGGCCCATGTAAGGTCCAGTCGTATGAGCAGAGAGATGATGTCAAGCACGTGGGTATAGTTCGATGTGTTAGTGATGTGACCCGTGGGTCCGGTCTGACTCATAGAGTAGGGAAGAGATTTTGCATTAAGTCTATTTATATATTAGGTAAAGTTTGGATGGACGAAAACATCAAGAAGCAGAATCATACTAACAATGTTATGTTTTTCTTAGTTCGTGATCGTAGGCCTTATGGCAGCCCAAGTGATTTTGGACAGATTTTTAACATGTTTGACAACGAGCCCAGTACAGCCACAATCAAGAATGATCTCAGAGACCGTTATCAAGTGCTGCGTAAATTCAGTGCTACTGTTATTGGTGGTCCCTCTGGATGCAAGGAACAGGCTTTAGTGAAGAGATTTTTTAAAGTAAACAATCATGTCGTTTATAATCATCAGGAGGAGGCTAAATATGCCAACCATACTGAGAATGCTTTGTTGTTGTATATGGCTTGTACTCATGCCTCTAATCCAGTGTATGCTACTCTGAAAATACGCATCTATTTCTACGATGCAGTTACGAATTAA
Protein Sequence MSKRPGDIIISTPVSKVRRRLNFDSPYTSRAAVPTVRGISKRRSWTYRPMYRKPRMYRMFRTPDIPRGCEGPCKVQSYEQRDDVKHVGIVRCVSDVTRGSGLTHRVGKRFCIKSIYILGKVWMDENIKKQNHTNNVMFFLVRDRRPYGSPSDFGQIFNMFDNEPSTATIKNDLRDRYQVLRKFSATVIGGPSGCKEQALVKRFFKVNNHVVYNHQEEAKYANHTENALLLYMACTHASNPVYATLKIRIYFYDAVTN

NCBI Accession YP_002643047.1
Location 1106-1510
Gene Name C3
Protein Name REn
Coding Region ATGGATTCACGCACAGGGGAACTCATCACTGCGCATCAAGCTCGGAATGGCGTTTTTATCTGGGAGATACAAAATCCCCTGTATTTCAAGATAACCAACCACGACGAGAGACCGTTCAACTACCAACACGACATAATCACAGTACAAATCAGGTTCAACCACAACCTGCGGAAGGCGTTGGGGATTCACAAGTGTTTTCTGAACTTCAAAGTCTGGACGAGCTTACGCCCTCAGACTGGTCGTTTCTTAAGGGTATTTAGGGTTCAAGTGTTAAAGTATTTAGATAATTTGGGTGTAATTTCAATTAATACAATTATTAGAGCTGTTGATCATGTACTGTATAACGTTCTTGTAAATACAATCGACGTTGTCGAAACACATGAAATAAAATTTAATATTTATTAA
Protein Sequence MDSRTGELITAHQARNGVFIWEIQNPLYFKITNHDERPFNYQHDIITVQIRFNHNLRKALGIHKCFLNFKVWTSLRPQTGRFLRVFRVQVLKYLDNLGVISINTIIRAVDHVLYNVLVNTIDVVETHEIKFNIY

NCBI Accession YP_002643048.1
Location 1251-1658
Gene Name C2
Protein Name TrAP
Coding Region ATGCGACCTTCGTCACCCTCAACGAGCCACTCTACTCAAGTGCCCATCAAAGTCCAGCACCGCATCGCGAAGAAGAAAGTAGTGAGGCGTAAGAGAGTGGACTTAGAGTGCGGGTGCTCGTACTTCATACATATTAACTGCAGTAACCATGGATTCACGCACAGGGGAACTCATCACTGCGCATCAAGCTCGGAATGGCGTTTTTATCTGGGAGATACAAAATCCCCTGTATTTCAAGATAACCAACCACGACGAGAGACCGTTCAACTACCAACACGACATAATCACAGTACAAATCAGGTTCAACCACAACCTGCGGAAGGCGTTGGGGATTCACAAGTGTTTTCTGAACTTCAAAGTCTGGACGAGCTTACGCCCTCAGACTGGTCGTTTCTTAAGGGTATTTAG
Protein Sequence MRPSSPSTSHSTQVPIKVQHRIAKKKVVRRKRVDLECGCSYFIHINCSNHGFTHRGTHHCASSSEWRFYLGDTKSPVFQDNQPRRETVQLPTRHNHSTNQVQPQPAEGVGDSQVFSELQSLDELTPSDWSFLKGI

NCBI Accession YP_002643049.1
Location 1567-2646
Gene Name C1
Protein Name replication-associated protein
Coding Region ATGGCTCCTCCAAAGAAATTTAGAATAAATTCCAAAAACTACTTCCTCACTTTCCCAAAATGCTCTATTTCTAAAGAAGAAGCCCTAGAGCAACTTCTAAAACTAGAAACCCCAACGAATAAAAAATATATCAAGATCTGCAGAGAACTTCACGAGGATGGCCAGCCTCATCTTCACGTGCTTCTGCAGTTCGAAGGCAAATACAACTGCCAAAATCAGAGATTCTTCGACCTGGTGTCCCCAACCAGGTCAGCACATTTCCATCCAAACATACAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTACATCGACAAGGATGGAGATACACTCGAATGGGGAGAGTTCCAGATCGATGGGAGATCTGCAAGAGGAGGGCAACAGACAGCCAATGACGCTTACGCCGCAGCGCTTAACGCAGGAAGTAAGGCAGAGGCTCTTAGGGTTATACGGGAATTAGCTCCCAAAGATTTTGTATTACAATTTCATAATTTAAATAATAATTTAGATAGAATTTTTCAGGAGCCTCCGGCTCCTTATGTTTCTCCTTTTTTATGTTCTTCTTTTAATCAAGTTCCGGAAGAACTTGAAGAGTGGGTCTCTGAGAATGTGAGCGATGCCGCTGCGCGGCCATGGAGACCGAATAGTATTGTTATTGAGGGTGATAGTCGTACCGGCAAGACGATGTGGGCTAGGTCATTAGGTCCACACAATTACTTGTGTGGGCATCTTGATCTTAGCCCAAAGGTGTATTCAAATGATGCTTGGTATAACGTCATTGATGACGTCGATCCCCATTACCTCAAACACTTCAAAGAATTTATGGGGGCCCAAAGAGACTGGCAAAGCAACACCAAGTACGGGAAGCCCATTCAAATTAAAGGTGGAATTCCCACTATCTTCCTCTGCAATCCAGGTCCAACATCATCATATAAAGAGTATCTAGACGAGGAAAAGAATGCATCACTAAAAGCCTGGGCTATAAAAAATGCGACCTTCGTCACCCTCAACGAGCCACTCTACTCAAGTGCCCATCAAAGTCCAGCACCGCATCGCGAAGAAGAAAGTAGTGAGGCGTAA
Protein Sequence MAPPKKFRINSKNYFLTFPKCSISKEEALEQLLKLETPTNKKYIKICRELHEDGQPHLHVLLQFEGKYNCQNQRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYIDKDGDTLEWGEFQIDGRSARGGQQTANDAYAAALNAGSKAEALRVIRELAPKDFVLQFHNLNNNLDRIFQEPPAPYVSPFLCSSFNQVPEELEEWVSENVSDAAARPWRPNSIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLDEEKNASLKAWAIKNATFVTLNEPLYSSAHQSPAPHREEESSEA

NCBI Accession YP_002643050.1
Location 2187-2489
Gene Name C4
Protein Name C4 protein
Coding Region ATGGCCAGCCTCATCTTCACGTGCTTCTGCAGTTCGAAGGCAAATACAACTGCCAAAATCAGAGATTCTTCGACCTGGTGTCCCCAACCAGGTCAGCACATTTCCATCCAAACATACAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTACATCGACAAGGATGGAGATACACTCGAATGGGGAGAGTTCCAGATCGATGGGAGATCTGCAAGAGGAGGGCAACAGACAGCCAATGACGCTTACGCCGCAGCGCTTAACGCAGGAAGTAAGGCAGAGGCTCTTAGGGTTATACGGGAATTAG
Protein Sequence MASLIFTCFCSSKANTTAKIRDSSTWCPQPGQHISIQTYRELNPAPTSSPTSTRMEIHSNGESSRSMGDLQEEGNRQPMTLTPQRLTQEVRQRLLGLYGN