Tomato leaf curl New Delhi virus 5
Basic Information
Genus |
Begomovirus
|
NCBI Assembly |
GCF_004786775.1 |
Isolate |
Bangladesh |
Release date |
2021/6/1 |
Submitter |
Monger,W.A., Mumford,R., Kelly,P. |
Host |
|
Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGAATGGCCGCGAAAATTTTGGTGGGCCCTCAACCAACGAAATGCAAGCTACATGGCTTATTTAGTGCGGGGGGACCATTAAATAGCCTTGCTGACGAAGTTTAGGTCCACAAACATGTGGGATCCATTATTGCACGAATTTCCTGAAAGCGTGCATGGTCTAAGGTGCATGCTAGCTGTAAAATATCTTCAAGAGATAGAGAAGAACTATTCCCCAGACACAGTGGGCTACGATCTTGTCCGAGATCTAATTTTAGTAGTTCGAGCAAAGAACTATGTCGAAGCGACCAGCAGATATCATCATTTCAACTCCCGCATCGAAGGTACGCCGACGTCTCAACTTCGACAGCCCTTATGGAGCTCGTGCAGTTGTCCCCATTGCCCGCGTCACAAAAGCAAAGGCGTGGACAAACAGGCCGATGAACAGAAAGCCCAGAATGTATAGAATGTACAGAAGCCCCGACGTGCCAAGGGGATGTGAAGGTCCTTGTAAGGTGCAGTCTTTTGAATCTAGGCACGATGTGTCTCATATTGGCAAAGTCATGTGTGTCAGTGACGTTACCCGAGGAACCGGACTGACTCATCGCGTGGGGAAGCGTTTCTGTGTGAAATCTGTGTATGTATTGGGGAAGATATGGATGGATGAAAACATAAAGACTAAAAACCACACGAACAGTGTGATGTTTTTCTTGGTTCGTGACCGTCGTCCTACGGGATCGCCACAGGATTTTGGTGAAGTGTTCAACATGTTTGACAATGAACCGAGCACCGCAACGGTGAAGAACATGCATCGTGATCGTTATCAAGTGTTAAGGAAATGGCATGCGACTGTGACTGGAGGGACTTATGCATCGAAGGAGCAAGCATTAGTTAGGAAGTTTGTTAGGGTTAATAATTATGTCGTTTATAATCAACAAGAGGCCGGAAAGTATGAAAATCATACTGAGAACGCATTAATGTTGTATATGGCCTGTACTCATGCATCAAATCCTGTGTATGCTACTTTGAAAATCCGGATCTATTTTTATGATTCGGTAACAAATTAATATATATTAATCCTTACATCACATGATGGCAATACATCAATAGTCTTTTCTAAAACATTATCCAATACATGATAGGCTGCTCTTATTACATTCGAAATTCCTATTACACCAAGCTCATGGAGGTATTTAAGGACCTGTGTCTTAAATACCCTCAAGAAAATCCCAGTCGGAGGGCGTAAGCCCGTCCAGATTTGGAAAATTAGAAAACACTTGTGAAGCCCCAGAGCTTTCCGCAGGTTGTGGTTGAACTGTATTTGGAGGTGGATGATGTCGTGATTCGTGAGGCATGGTCTGCTGTCGTGTTTCAATATTTTGAAATACAGGGGATTTGGAACGTCCCAAATAAACACGCCACTCTCTACTCGATCCGCAGTGATGTACTCCCCTGTGCGTGAATCCGTGATCATGACAGTTGATTGATATGTAGTACGAACAACCACACTGCAGATCAACTCGCCTCCTGCGTATGTTCTTCTTCTTCTTCTGGGGGACTGATGTTTTCGCGACCGGAATAGAGTGGTTCTTGGAGTGTGACGAAGACTGCATTCTTGATAGCCCACTGTTTCAGTGATGCATTTTTTTCTTCGTCGAGATATTCCTTATAGCTGCTGTTTGGTCCTTTATTGCAGAGGAAGATGGTGGGAATACCGCCTTTAATCATGACCGGCTTTCCGTACTTCGTATTGCTTTGCCAGTCACGCTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGATAGTGGGGATCGACGTCATCAATGACGTTGTACCACGCTTCATTATTGTACACTTTCGGGCTGAGATCCAGATGACCACACAAGTAATTGTGGGGTCCTAGTGAACGTGCCCACATTGTCTTTCCCGTTCTACTATCCCCCTCTATTACTACGCTTATTGGTCTAAAAGGCCGCGCAGCGGCAGACAATACATTGGACTGAACCCAATCGACGAGTTCTGGAGGAACTGTGTCGAAGGAAGTAGTTGAGAATGGAGATACATAGACCTCAGAACGTGGTTGAAAAATGCGATCTAAATTCGTCATTAAATTATGGAACTGCAGAACATAATCTTTTGGTGCTAGTTCTTTTAGTACTTTCAATGCATCTTCTTTGTTTCCGGTGTTAATTGCCTGAGCGTATGCATCGTTTGCCGTCTGTTGACCCCCACGAGCAGATCGTCCGTCGATCTGGAAAACACCCCATTCTAGCACGTCTCCGTCTTTGTCGATATATGCCTTGACGTCGGACGCCGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCGAGTTGGGGATACCAAGTCGAAGAATCTGTTATTCTTGCACTGGTATTTCCCTTCGAATTGAATGAGAACATGGATATGCGGAGACCCATCCTCGTGACTCTCTCTACAGATTTTGATGAATTTCTTGCAAGTAGGGGTTTCTAGGTTTATTAATTGGGAAAGTGCCTCTTCCTTTGTAAGAGAGCATTTTGGGTAAGTGAGGAAATAGTTTTTGGCATTAATTCTAAAACGACTTGGCGGAGCCATATAAAATGTCGTTTCGATCCGGTGTCTCTCAACTTTCTCTATGTAATTGGTGTCTGGAGTCCCATATATAGTTAGGACACCATATGGCACTATTGTAATTTCTGAAAGTAAATTACTTTAATTCAAATTGCGTAAAGCGGCCATTCGTATAATATT
Gene Information
NCBI Accession
|
YP_010084316.1
|
Location
|
118-447 |
Gene Name
|
AV2 |
Protein Name
|
pre-coat protein |
Coding Region
|
ATGTGGGATCCATTATTGCACGAATTTCCTGAAAGCGTGCATGGTCTAAGGTGCATGCTAGCTGTAAAATATCTTCAAGAGATAGAGAAGAACTATTCCCCAGACACAGTGGGCTACGATCTTGTCCGAGATCTAATTTTAGTAGTTCGAGCAAAGAACTATGTCGAAGCGACCAGCAGATATCATCATTTCAACTCCCGCATCGAAGGTACGCCGACGTCTCAACTTCGACAGCCCTTATGGAGCTCGTGCAGTTGTCCCCATTGCCCGCGTCACAAAAGCAAAGGCGTGGACAAACAGGCCGATGAACAGAAAGCCCAGAATGTATAG |
Protein Sequence
|
MWDPLLHEFPESVHGLRCMLAVKYLQEIEKNYSPDTVGYDLVRDLILVVRAKNYVEATSRYHHFNSRIEGTPTSQLRQPLWSSCSCPHCPRHKSKGVDKQADEQKAQNV |
NCBI Accession
|
YP_010084317.1
|
Location
|
278-1048 |
Gene Name
|
AV1 |
Protein Name
|
coat protein |
Coding Region
|
ATGTCGAAGCGACCAGCAGATATCATCATTTCAACTCCCGCATCGAAGGTACGCCGACGTCTCAACTTCGACAGCCCTTATGGAGCTCGTGCAGTTGTCCCCATTGCCCGCGTCACAAAAGCAAAGGCGTGGACAAACAGGCCGATGAACAGAAAGCCCAGAATGTATAGAATGTACAGAAGCCCCGACGTGCCAAGGGGATGTGAAGGTCCTTGTAAGGTGCAGTCTTTTGAATCTAGGCACGATGTGTCTCATATTGGCAAAGTCATGTGTGTCAGTGACGTTACCCGAGGAACCGGACTGACTCATCGCGTGGGGAAGCGTTTCTGTGTGAAATCTGTGTATGTATTGGGGAAGATATGGATGGATGAAAACATAAAGACTAAAAACCACACGAACAGTGTGATGTTTTTCTTGGTTCGTGACCGTCGTCCTACGGGATCGCCACAGGATTTTGGTGAAGTGTTCAACATGTTTGACAATGAACCGAGCACCGCAACGGTGAAGAACATGCATCGTGATCGTTATCAAGTGTTAAGGAAATGGCATGCGACTGTGACTGGAGGGACTTATGCATCGAAGGAGCAAGCATTAGTTAGGAAGTTTGTTAGGGTTAATAATTATGTCGTTTATAATCAACAAGAGGCCGGAAAGTATGAAAATCATACTGAGAACGCATTAATGTTGTATATGGCCTGTACTCATGCATCAAATCCTGTGTATGCTACTTTGAAAATCCGGATCTATTTTTATGATTCGGTAACAAATTAA |
Protein Sequence
|
MSKRPADIIISTPASKVRRRLNFDSPYGARAVVPIARVTKAKAWTNRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVSHIGKVMCVSDVTRGTGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPTGSPQDFGEVFNMFDNEPSTATVKNMHRDRYQVLRKWHATVTGGTYASKEQALVRKFVRVNNYVVYNQQEAGKYENHTENALMLYMACTHASNPVYATLKIRIYFYDSVTN |
NCBI Accession
|
YP_010084318.1
|
Location
|
308-793 |
Gene Name
|
AC5 |
Protein Name
|
AC5 |
Coding Region
|
ATGCATGTTCTTCACCGTTGCGGTGCTCGGTTCATTGTCAAACATGTTGAACACTTCACCAAAATCCTGTGGCGATCCCGTAGGACGACGGTCACGAACCAAGAAAAACATCACACTGTTCGTGTGGTTTTTAGTCTTTATGTTTTCATCCATCCATATCTTCCCCAATACATACACAGATTTCACACAGAAACGCTTCCCCACGCGATGAGTCAGTCCGGTTCCTCGGGTAACGTCACTGACACACATGACTTTGCCAATATGAGACACATCGTGCCTAGATTCAAAAGACTGCACCTTACAAGGACCTTCACATCCCCTTGGCACGTCGGGGCTTCTGTACATTCTATACATTCTGGGCTTTCTGTTCATCGGCCTGTTTGTCCACGCCTTTGCTTTTGTGACGCGGGCAATGGGGACAACTGCACGAGCTCCATAAGGGCTGTCGAAGTTGAGACGTCGGCGTACCTTCGATGCGGGAGTTGA |
Protein Sequence
|
MHVLHRCGARFIVKHVEHFTKILWRSRRTTVTNQEKHHTVRVVFSLYVFIHPYLPQYIHRFHTETLPHAMSQSGSSGNVTDTHDFANMRHIVPRFKRLHLTRTFTSPWHVGASVHSIHSGLSVHRPVCPRLCFCDAGNGDNCTSSIRAVEVETSAYLRCGS |
NCBI Accession
|
YP_010084319.1
|
Location
|
1045-1455 |
Gene Name
|
AC3 |
Protein Name
|
replication enhancer protein |
Coding Region
|
ATGATCACGGATTCACGCACAGGGGAGTACATCACTGCGGATCGAGTAGAGAGTGGCGTGTTTATTTGGGACGTTCCAAATCCCCTGTATTTCAAAATATTGAAACACGACAGCAGACCATGCCTCACGAATCACGACATCATCCACCTCCAAATACAGTTCAACCACAACCTGCGGAAAGCTCTGGGGCTTCACAAGTGTTTTCTAATTTTCCAAATCTGGACGGGCTTACGCCCTCCGACTGGGATTTTCTTGAGGGTATTTAAGACACAGGTCCTTAAATACCTCCATGAGCTTGGTGTAATAGGAATTTCGAATGTAATAAGAGCAGCCTATCATGTATTGGATAATGTTTTAGAAAAGACTATTGATGTATTGCCATCATGTGATGTAAGGATTAATATATATTAA |
Protein Sequence
|
MITDSRTGEYITADRVESGVFIWDVPNPLYFKILKHDSRPCLTNHDIIHLQIQFNHNLRKALGLHKCFLIFQIWTGLRPPTGIFLRVFKTQVLKYLHELGVIGISNVIRAAYHVLDNVLEKTIDVLPSCDVRINIY |
NCBI Accession
|
YP_010084320.1
|
Location
|
1190-1594 |
Gene Name
|
AC2 |
Protein Name
|
transcriptional activator protein |
Coding Region
|
ATGCAGTCTTCGTCACACTCCAAGAACCACTCTATTCCGGTCGCGAAAACATCAGTCCCCCAGAAGAAGAAGAAGAACATACGCAGGAGGCGAGTTGATCTGCAGTGTGGTTGTTCGTACTACATATCAATCAACTGTCATGATCACGGATTCACGCACAGGGGAGTACATCACTGCGGATCGAGTAGAGAGTGGCGTGTTTATTTGGGACGTTCCAAATCCCCTGTATTTCAAAATATTGAAACACGACAGCAGACCATGCCTCACGAATCACGACATCATCCACCTCCAAATACAGTTCAACCACAACCTGCGGAAAGCTCTGGGGCTTCACAAGTGTTTTCTAATTTTCCAAATCTGGACGGGCTTACGCCCTCCGACTGGGATTTTCTTGAGGGTATTTAA |
Protein Sequence
|
MQSSSHSKNHSIPVAKTSVPQKKKKNIRRRRVDLQCGCSYYISINCHDHGFTHRGVHHCGSSREWRVYLGRSKSPVFQNIETRQQTMPHESRHHPPPNTVQPQPAESSGASQVFSNFPNLDGLTPSDWDFLEGI |
NCBI Accession
|
YP_010084321.1
|
Location
|
1497-2582 |
Gene Name
|
AC1 |
Protein Name
|
replication initiator protein |
Coding Region
|
ATGGCTCCGCCAAGTCGTTTTAGAATTAATGCCAAAAACTATTTCCTCACTTACCCAAAATGCTCTCTTACAAAGGAAGAGGCACTTTCCCAATTAATAAACCTAGAAACCCCTACTTGCAAGAAATTCATCAAAATCTGTAGAGAGAGTCACGAGGATGGGTCTCCGCATATCCATGTTCTCATTCAATTCGAAGGGAAATACCAGTGCAAGAATAACAGATTCTTCGACTTGGTATCCCCAACTCGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCGGCGTCCGACGTCAAGGCATATATCGACAAAGACGGAGACGTGCTAGAATGGGGTGTTTTCCAGATCGACGGACGATCTGCTCGTGGGGGTCAACAGACGGCAAACGATGCATACGCTCAGGCAATTAACACCGGAAACAAAGAAGATGCATTGAAAGTACTAAAAGAACTAGCACCAAAAGATTATGTTCTGCAGTTCCATAATTTAATGACGAATTTAGATCGCATTTTTCAACCACGTTCTGAGGTCTATGTATCTCCATTCTCAACTACTTCCTTCGACACAGTTCCTCCAGAACTCGTCGATTGGGTTCAGTCCAATGTATTGTCTGCCGCTGCGCGGCCTTTTAGACCAATAAGCGTAGTAATAGAGGGGGATAGTAGAACGGGAAAGACAATGTGGGCACGTTCACTAGGACCCCACAATTACTTGTGTGGTCATCTGGATCTCAGCCCGAAAGTGTACAATAATGAAGCGTGGTACAACGTCATTGATGACGTCGATCCCCACTATCTAAAGCACTTTAAAGAATTCATGGGGGCCCAGCGTGACTGGCAAAGCAATACGAAGTACGGAAAGCCGGTCATGATTAAAGGCGGTATTCCCACCATCTTCCTCTGCAATAAAGGACCAAACAGCAGCTATAAGGAATATCTCGACGAAGAAAAAAATGCATCACTGAAACAGTGGGCTATCAAGAATGCAGTCTTCGTCACACTCCAAGAACCACTCTATTCCGGTCGCGAAAACATCAGTCCCCCAGAAGAAGAAGAAGAACATACGCAGGAGGCGAGTTGA |
Protein Sequence
|
MAPPSRFRINAKNYFLTYPKCSLTKEEALSQLINLETPTCKKFIKICRESHEDGSPHIHVLIQFEGKYQCKNNRFFDLVSPTRSAHFHPNIQGAKSASDVKAYIDKDGDVLEWGVFQIDGRSARGGQQTANDAYAQAINTGNKEDALKVLKELAPKDYVLQFHNLMTNLDRIFQPRSEVYVSPFSTTSFDTVPPELVDWVQSNVLSAAARPFRPISVVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYNNEAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVMIKGGIPTIFLCNKGPNSSYKEYLDEEKNASLKQWAIKNAVFVTLQEPLYSGRENISPPEEEEEHTQEAS |
NCBI Accession
|
YP_010084322.1
|
Location
|
2249-2425 |
Gene Name
|
AC4 |
Protein Name
|
AC4 |
Coding Region
|
ATGGGTCTCCGCATATCCATGTTCTCATTCAATTCGAAGGGAAATACCAGTGCAAGAATAACAGATTCTTCGACTTGGTATCCCCAACTCGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCGGCGTCCGACGTCAAGGCATATATCGACAAAGACGGAGACGTGCTAG |
Protein Sequence
|
MGLRISMFSFNSKGNTSARITDSSTWYPQLGQHISIRTFRELNRRPTSRHISTKTETC |