Tomato leaf curl New Delhi virus 4


Basic Information

Genus Begomovirus
NCBI Assembly GCF_002824185.1
Isolate India: Gujarat, Junagad
Release date 2018/8/25
Submitter Swarnalatha,P., Manasa,M., Venkataravanappa,V., Jalali,S., KrishnaReddy,M.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_038471
ACCGAATGGCCGTGCTAATTTTTAGATGGGCCCTCATCCAATGAAATTCATGCTCCATGGCCTATTTAGTGCGTGGGGACCAATAAAGAGACCAGCTCACCAAGGTAGGATCCACAAACATGCGGGATCCATTATTGCTCGCCTTTCCAGAAAGAGTCCATGGTGTAAGGAGCATGTTAGTTGAAAAACCTCTCCAAGAGATGGAAGACCATTATTCACCAGACACAGTAGGCTACGATTTTATCCGAGATCTCATTCTTGTTCTTCGAGCAAAAAACTATGAAGAACCGACCAGCAGATATCATCATATCAAAGCCCCCATCGAAGGTATACAGATATGTCAAGTTCGACAGCCCCAAAGGAGCGAGTGCAGTGGTCCCCATTGCCCGCGTCACAGAAGCAAAGGCCTGGACCAACAGGCCTATGAACAGAAAACCCAGAATATACAGAACGCATAGAAGTCCAGACGTGCCAAGGGGCCGTGAAGGCCAGAGGAAATTGCACTCGATTGAATCCAGGCTTGATGTATATCGGACTGGCAAAATCAAGGGTGTTATTCATGTTACCCGAGAAATCGGACTCACACATAGCGTAGGGAAGCGATTTGGGGTGAATTCGGTTTATGTGCTGGAAAAGAGAGGGATCGATGAAACCATCAAGCCAAAAAGCCATACTTACCGGGTAATGTTTTTTTTGGTTCGTGACCGTCGTCCTACAGGAACTCCCCAGGATTTCGGGGACGTGTTTAATATGTTTGACAATGAACCGAGCACAGCAACGGTGAAGAACATGCATCGTGATCGTTATCAAGTCTTACGGAAGTGGCATGCAACTGTGACCGGAGGAACATATGCATCTAAGGAGCAAGCATTAGTTAGCAAGTTTGTTAGGGTTAATAATTATGTAGTTTATAATCAACAAGAGGCCGGCAAGTATGAGAATCATACTGAAAACGCATTAATGTTGTATATGGCCTGCACTCATGCATCAAATCCTGTATATGCTACTTTGAAAATCCGGATCTATTTCTATGATTCGGTCACAAATTAATAAATATCAAGCTTTATATCATATGTAGTCCATACATCAATTGTTCGCTCCATTACATTATCCAAAACATGATAAACTGCTCTTATTACATTATTAATTCCTATTACACCTAACATATCCAGGTACTTAAGGACCTGGGTTTTGAAGACTCTCAAGAAAATCCCAATCTGAGGGCGTAAGCCCGTCCAGATTTTGAAAGTTAGAAAACACTTGTGAAGTCCCAGGGCTTTCCGCAGGTTGTGGTTGAATTGTATTTGAATCTTGATTATGTCGTGCTGTGTTAGGAAGGGCCTGCTGTCGTGTTTCAAAATTTTGAAATACAGGGGATTTCTGATTTCCCAGGTATATACGCCACTCTCTGTACGATCCGCAGTGATGTACTCCCCTGTGCGTGAATCCGTGGTCATGGCAGGTTAATGCTATGAAGTAAGAACAGCCACACGGTAGATCAACTCGTCGACGTCTGGTCCCCTTCTTGGCTAGCTTGTGCTGTACTTTGATTGGTACCTGAGTAGAGTGGGCCTTCGAGGGTGACGAAGGTCGCATTTTTTAAAGCCCAGGTTTTTAGTGCAGAATTCTTTTCCTCATCCAAGTATTCTTTATAGCTGGAGTTGGGTCCTGGATTGCAGAGGAAAGTAGTGGGATTCCCGCCTTTAATTTGAACTGGCTTCCCGTACTTTGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGATTTCTTTAAAGTGCTTTAGATAGTGGGGGTCGACGTCATCAATGACGTTGTACCAGGCTTCATTACTGTACACCTTTGGCCTAAGGTCAAAATGACCACACAAATAATTATGTGGACCTAAGCAACGAGCCCACATTGTTTTGCCAGTTCTACTATCCCCCTCTATGACTATGCTTATGGGCCTAAAAGGCCGCGCAGCGGCACACACAACATTTGACGTAACCCAATCGACGAGGTCTGCCGGAACTCTGTCGAAGGATGAAATTGAAAATGGAGAAACATAAACCTCAGAAGGAGGTTGAAAAATGCGATCTAAATTGGTATTTAAATTGTGAAATTGTAAAACGAAATATGTAGGAGATTTCTCCCTTAATATATTGAGGGCCTGAGATTTGGACCCTGAATTAATTGCCTCGGCATATGGGTCGTTGGCAGATTGGCAACCTCCTCTAGCTGATCGTCCATCGACTTGGAAAACACCCCATTCTAGAACGTCTCCGTCTTTTTCCATGTAGGATTTGACATCGCTTGAGCTCTTAGCTCCCTGAATGTCCGGATGGAAATGTGCTGACCGACTTGGGGAAACCAATTCCAAGCATCTGTTATTCTTGCAGTGGAATTTCCCTTCGAATTGGATGACAACCTGGATATGCCGAAACCCATCTACATGAAGCTCTCTACAGATCGAGAGGAATTTCTTCTGCCCCTGGGTTTCCCTGGTTTGCAATTGACAAAGTGCCTCTCCTTTAGTTAGAGAGCACTTTGGATCTGTGAGGAAATACTTTTTGGCATTTTCCCTAACACGACCTGGCGAAACCATTGCACTCGCCCCTTTGATTCTGCCTCCCTCAACATATCTATATACCTGGTGTCTGGACTCCTATATATTGGTAACACACCATATGGCCTTATTGTAATTTTGAACAGAAAATTACTTTGATTCTCATTCCCTAATCCGGCCATTCGTATAATATT

Gene Information

NCBI Accession YP_009506532.1
Location 120-458
Protein Name AV2
Coding Region ATGCGGGATCCATTATTGCTCGCCTTTCCAGAAAGAGTCCATGGTGTAAGGAGCATGTTAGTTGAAAAACCTCTCCAAGAGATGGAAGACCATTATTCACCAGACACAGTAGGCTACGATTTTATCCGAGATCTCATTCTTGTTCTTCGAGCAAAAAACTATGAAGAACCGACCAGCAGATATCATCATATCAAAGCCCCCATCGAAGGTATACAGATATGTCAAGTTCGACAGCCCCAAAGGAGCGAGTGCAGTGGTCCCCATTGCCCGCGTCACAGAAGCAAAGGCCTGGACCAACAGGCCTATGAACAGAAAACCCAGAATATACAGAACGCATAG
Protein Sequence MRDPLLLAFPERVHGVRSMLVEKPLQEMEDHYSPDTVGYDFIRDLILVLRAKNYEEPTSRYHHIKAPIEGIQICQVRQPQRSECSGPHCPRHRSKGLDQQAYEQKTQNIQNA

NCBI Accession YP_009506533.1
Location 280-1050
Protein Name AV1
Coding Region ATGAAGAACCGACCAGCAGATATCATCATATCAAAGCCCCCATCGAAGGTATACAGATATGTCAAGTTCGACAGCCCCAAAGGAGCGAGTGCAGTGGTCCCCATTGCCCGCGTCACAGAAGCAAAGGCCTGGACCAACAGGCCTATGAACAGAAAACCCAGAATATACAGAACGCATAGAAGTCCAGACGTGCCAAGGGGCCGTGAAGGCCAGAGGAAATTGCACTCGATTGAATCCAGGCTTGATGTATATCGGACTGGCAAAATCAAGGGTGTTATTCATGTTACCCGAGAAATCGGACTCACACATAGCGTAGGGAAGCGATTTGGGGTGAATTCGGTTTATGTGCTGGAAAAGAGAGGGATCGATGAAACCATCAAGCCAAAAAGCCATACTTACCGGGTAATGTTTTTTTTGGTTCGTGACCGTCGTCCTACAGGAACTCCCCAGGATTTCGGGGACGTGTTTAATATGTTTGACAATGAACCGAGCACAGCAACGGTGAAGAACATGCATCGTGATCGTTATCAAGTCTTACGGAAGTGGCATGCAACTGTGACCGGAGGAACATATGCATCTAAGGAGCAAGCATTAGTTAGCAAGTTTGTTAGGGTTAATAATTATGTAGTTTATAATCAACAAGAGGCCGGCAAGTATGAGAATCATACTGAAAACGCATTAATGTTGTATATGGCCTGCACTCATGCATCAAATCCTGTATATGCTACTTTGAAAATCCGGATCTATTTCTATGATTCGGTCACAAATTAA
Protein Sequence MKNRPADIIISKPPSKVYRYVKFDSPKGASAVVPIARVTEAKAWTNRPMNRKPRIYRTHRSPDVPRGREGQRKLHSIESRLDVYRTGKIKGVIHVTREIGLTHSVGKRFGVNSVYVLEKRGIDETIKPKSHTYRVMFFLVRDRRPTGTPQDFGDVFNMFDNEPSTATVKNMHRDRYQVLRKWHATVTGGTYASKEQALVSKFVRVNNYVVYNQQEAGKYENHTENALMLYMACTHASNPVYATLKIRIYFYDSVTN

NCBI Accession YP_009506534.1
Location 310-795
Protein Name AC5
Coding Region ATGCATGTTCTTCACCGTTGCTGTGCTCGGTTCATTGTCAAACATATTAAACACGTCCCCGAAATCCTGGGGAGTTCCTGTAGGACGACGGTCACGAACCAAAAAAAACATTACCCGGTAAGTATGGCTTTTTGGCTTGATGGTTTCATCGATCCCTCTCTTTTCCAGCACATAAACCGAATTCACCCCAAATCGCTTCCCTACGCTATGTGTGAGTCCGATTTCTCGGGTAACATGAATAACACCCTTGATTTTGCCAGTCCGATATACATCAAGCCTGGATTCAATCGAGTGCAATTTCCTCTGGCCTTCACGGCCCCTTGGCACGTCTGGACTTCTATGCGTTCTGTATATTCTGGGTTTTCTGTTCATAGGCCTGTTGGTCCAGGCCTTTGCTTCTGTGACGCGGGCAATGGGGACCACTGCACTCGCTCCTTTGGGGCTGTCGAACTTGACATATCTGTATACCTTCGATGGGGGCTTTGA
Protein Sequence MHVLHRCCARFIVKHIKHVPEILGSSCRTTVTNQKKHYPVSMAFWLDGFIDPSLFQHINRIHPKSLPYAMCESDFSGNMNNTLDFASPIYIKPGFNRVQFPLAFTAPWHVWTSMRSVYSGFSVHRPVGPGLCFCDAGNGDHCTRSFGAVELDISVYLRWGL

NCBI Accession YP_009506535.1
Location 1047-1457
Protein Name AC3
Coding Region ATGACCACGGATTCACGCACAGGGGAGTACATCACTGCGGATCGTACAGAGAGTGGCGTATATACCTGGGAAATCAGAAATCCCCTGTATTTCAAAATTTTGAAACACGACAGCAGGCCCTTCCTAACACAGCACGACATAATCAAGATTCAAATACAATTCAACCACAACCTGCGGAAAGCCCTGGGACTTCACAAGTGTTTTCTAACTTTCAAAATCTGGACGGGCTTACGCCCTCAGATTGGGATTTTCTTGAGAGTCTTCAAAACCCAGGTCCTTAAGTACCTGGATATGTTAGGTGTAATAGGAATTAATAATGTAATAAGAGCAGTTTATCATGTTTTGGATAATGTAATGGAGCGAACAATTGATGTATGGACTACATATGATATAAAGCTTGATATTTATTAA
Protein Sequence MTTDSRTGEYITADRTESGVYTWEIRNPLYFKILKHDSRPFLTQHDIIKIQIQFNHNLRKALGLHKCFLTFKIWTGLRPQIGIFLRVFKTQVLKYLDMLGVIGINNVIRAVYHVLDNVMERTIDVWTTYDIKLDIY

NCBI Accession YP_009506536.1
Location 1177-1596
Protein Name AC2
Coding Region ATGCGACCTTCGTCACCCTCGAAGGCCCACTCTACTCAGGTACCAATCAAAGTACAGCACAAGCTAGCCAAGAAGGGGACCAGACGTCGACGAGTTGATCTACCGTGTGGCTGTTCTTACTTCATAGCATTAACCTGCCATGACCACGGATTCACGCACAGGGGAGTACATCACTGCGGATCGTACAGAGAGTGGCGTATATACCTGGGAAATCAGAAATCCCCTGTATTTCAAAATTTTGAAACACGACAGCAGGCCCTTCCTAACACAGCACGACATAATCAAGATTCAAATACAATTCAACCACAACCTGCGGAAAGCCCTGGGACTTCACAAGTGTTTTCTAACTTTCAAAATCTGGACGGGCTTACGCCCTCAGATTGGGATTTTCTTGAGAGTCTTCAAAACCCAGGTCCTTAA
Protein Sequence MRPSSPSKAHSTQVPIKVQHKLAKKGTRRRRVDLPCGCSYFIALTCHDHGFTHRGVHHCGSYREWRIYLGNQKSPVFQNFETRQQALPNTARHNQDSNTIQPQPAESPGTSQVFSNFQNLDGLTPSDWDFLESLQNPGP

NCBI Accession YP_009506537.1
Location 1499-2584
Protein Name AC1
Coding Region ATGGTTTCGCCAGGTCGTGTTAGGGAAAATGCCAAAAAGTATTTCCTCACAGATCCAAAGTGCTCTCTAACTAAAGGAGAGGCACTTTGTCAATTGCAAACCAGGGAAACCCAGGGGCAGAAGAAATTCCTCTCGATCTGTAGAGAGCTTCATGTAGATGGGTTTCGGCATATCCAGGTTGTCATCCAATTCGAAGGGAAATTCCACTGCAAGAATAACAGATGCTTGGAATTGGTTTCCCCAAGTCGGTCAGCACATTTCCATCCGGACATTCAGGGAGCTAAGAGCTCAAGCGATGTCAAATCCTACATGGAAAAAGACGGAGACGTTCTAGAATGGGGTGTTTTCCAAGTCGATGGACGATCAGCTAGAGGAGGTTGCCAATCTGCCAACGACCCATATGCCGAGGCAATTAATTCAGGGTCCAAATCTCAGGCCCTCAATATATTAAGGGAGAAATCTCCTACATATTTCGTTTTACAATTTCACAATTTAAATACCAATTTAGATCGCATTTTTCAACCTCCTTCTGAGGTTTATGTTTCTCCATTTTCAATTTCATCCTTCGACAGAGTTCCGGCAGACCTCGTCGATTGGGTTACGTCAAATGTTGTGTGTGCCGCTGCGCGGCCTTTTAGGCCCATAAGCATAGTCATAGAGGGGGATAGTAGAACTGGCAAAACAATGTGGGCTCGTTGCTTAGGTCCACATAATTATTTGTGTGGTCATTTTGACCTTAGGCCAAAGGTGTACAGTAATGAAGCCTGGTACAACGTCATTGATGACGTCGACCCCCACTATCTAAAGCACTTTAAAGAAATCATGGGGGCCCAAAGGGACTGGCAATCAAATACAAAGTACGGGAAGCCAGTTCAAATTAAAGGCGGGAATCCCACTACTTTCCTCTGCAATCCAGGACCCAACTCCAGCTATAAAGAATACTTGGATGAGGAAAAGAATTCTGCACTAAAAACCTGGGCTTTAAAAAATGCGACCTTCGTCACCCTCGAAGGCCCACTCTACTCAGGTACCAATCAAAGTACAGCACAAGCTAGCCAAGAAGGGGACCAGACGTCGACGAGTTGA
Protein Sequence MVSPGRVRENAKKYFLTDPKCSLTKGEALCQLQTRETQGQKKFLSICRELHVDGFRHIQVVIQFEGKFHCKNNRCLELVSPSRSAHFHPDIQGAKSSSDVKSYMEKDGDVLEWGVFQVDGRSARGGCQSANDPYAEAINSGSKSQALNILREKSPTYFVLQFHNLNTNLDRIFQPPSEVYVSPFSISSFDRVPADLVDWVTSNVVCAAARPFRPISIVIEGDSRTGKTMWARCLGPHNYLCGHFDLRPKVYSNEAWYNVIDDVDPHYLKHFKEIMGAQRDWQSNTKYGKPVQIKGGNPTTFLCNPGPNSSYKEYLDEEKNSALKTWALKNATFVTLEGPLYSGTNQSTAQASQEGDQTSTS

NCBI Accession YP_009506538.1
Location 2251-2427
Protein Name AC4
Coding Region ATGGGTTTCGGCATATCCAGGTTGTCATCCAATTCGAAGGGAAATTCCACTGCAAGAATAACAGATGCTTGGAATTGGTTTCCCCAAGTCGGTCAGCACATTTCCATCCGGACATTCAGGGAGCTAAGAGCTCAAGCGATGTCAAATCCTACATGGAAAAAGACGGAGACGTTCTAG
Protein Sequence MGFGISRLSSNSKGNSTARITDAWNWFPQVGQHISIRTFRELRAQAMSNPTWKKTETF