Tomato leaf curl Namakely virus


Basic Information

Genus Begomovirus
NCBI Assembly GCF_002987045.1
Isolate Madagascar:Antsiranana, Namakely
Release date 2018/8/26
Submitter Lefeuvre,P., Martin,D.P., Hoareau,M., Naze,F., Becker,N., Delatte,H., Reynaud,B., Lett,J.M.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_038899
ACCGGATGGCCGCGCCCCCGAAAAAGGAATGTGGTCCCCACGCACTAGTCTATGTCAGCCAATCAGAATAGCGCTTGAAAGCTTAGTTATTTGTTTTTGTCTTTATATACTTGGGCCGTAAGTTGTTTAAAGTGCAACATGTGGGATCCATTGTTAAATGAATTTCCGGACTCTGTGCATGGGTTTCGTTGTATGCTTGCCATAAAATATCTGCAGGCCGTTGAGCAAACTTATGAGCCCAATACATTGGGCCACGATTTAATTCGAGATTTAATTTCTGTGATTAGAGCCCGTGACTATGTCGAAGCGACCCGGAGATATAATCATTTCCACGCCCGTCTCGAAGGTGCGTCGAAGGCTGAACTTCGACAGCCCATATACCAGCCGTGCTGCTGCCCCCATTGTCCCAGGCACAAACAGACGTCGATCATGGACTTACAGGCCCATGTATCGAAAGCCCAGGATGTACAGAATGTACAGAAGCCCTGATGTTCCTCGTGGTTGTGAAGGCCCATGTAAGGTCCAGTCGTTTGAGCAGAGGGATGATGTTAAGCATACCGGTATTGTTCGTTGTGTTAGTGATGTTACGCGTGGTTCGGGTATTACCCATAGAGTTGGCAAGAGGTTTTGTGTTAAGTCCATTTACATTTTAGGGAAGATCTGGATGGATGAAAATATCAAGAAGCAGAATCATACTAATCAGGTTATGTTTTTCCTTGTTCGTGATAGAAGGCCCTATGGGCCTTCTCCAATGGATTTTGGACAGGTGTTCAACATGTTTGATAATGAGCCCAGTACAGCTACAGTGAAGAATGATTTGAGAGACAGATATCAAGTTATGCGGAAATTTCATGCAACTGTTGTTGGTGGACCCTCAGGGATGAGAGAGCAGACTTTAGTTAAGAGATTTTTTAGGATTAATAGTCATGTAACGTATAATCATCAGGAGCAGGCTAAGTATGAGAACCATACTGAGAACGCTTTGTTGTTGTATATGGCATGTACTCATGCTTCTAACCCAGTGTATGCTACTCTTAAGATACGGATCTATTTTTATGATTCGGTCAGCAATTAATAAATATTGAATTTTATTTCATAATTCTCCTCAACTTGGAGTGTATTTACAAGTACATCGTACAATACATAATCAACTGCTCTTATTACATTGTTAATTGAAATAATTCCTAATCTATCTAAATACATGAGAACTTGAGTCCTAAATACTCTTAAGAAACGACCAGTCTGAGGGCGTAAGCTCGTCCAGATCTTGAAGTTGAGAAAACATTTGTGAATCCCCAGTTCCTTCCTGATGTTGTGGTTGAACCGTATCTGGATTGATATGATGTCGTGGTTCATGTTGAATGGTCTGATGCTGTGGTCGATTATCTTGAAATATAGGGGATTTTGTATCTCCCAGATAAACACGCCACTCTGTGCTTGAGCTGCAGTGATGAGTTCCCCTGTGCGTAAATCCATGGTTTGTGCAGTTGATGTGTAGATAATAGGAGCAACCGCAGTCTAGGTCAATTCTTCTACGCCTCACTGCTTTCCTCTTGGCTATGCGGTGGTGGACCTTGATTGGTACTTGAGAACAATGGCTCGTGGAGGGTGACGAAGGTCGCATTCTTCAGTGCCCAGGCTTTTAGTGGTGCATTTTTCTCCTCGTCTAGATATTCTTTATAAGAGGATGTTGGTCCTGGATTGCAGAGGAATATAGTGGGAATTCCGCCTTTTATTTGAATTGGCTTCCCGTACTTTGTGTTGCTCTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAATGTTTTAAATAATGCGGGTCCACGTCATCAATGATGTTGAACCATGCATCATTGCTGTAGACTTTAGGACTCAGGTCAAGATGACCACATAAATAGTTGTGGGGTCCTAATGATCTGGCCCACATCGTCTTCCCCGTCCTACTATCACCCTCAATTACAATACTAATCGGTCTCCACGGCCGCGCAGCGGCATCCCTGATGTTCTCCGACACCCAAACTTCAAGTTCTTCGGGAACTTGATTAAAAGAAGAAGAAAGAAATGGAGAAACATAAGGAGCCGGAGGCTCCTTAAAAATCCTATCTAAATTACTATTTAAATTATGAAATTGTAAAACATAATCTTTTGGGACTAATTCCTTAATGACTCTAAGAGCCTCTGACTTACTGCCTGCGTTAAGAGCTGTGGCGTAAGCGTCATTGGCGGATTGTTGTCCCCCTCTTGCAGATCTTCCATCGATCTGAAACTCGCCCCATTCGAGGGTGTCTCCGTCCTTGTCGATGTAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGGCCTTGTTGGGGATACAAGGTCGAAGAATCTCTGATTCGTGCACTGGTACTTTCCTTCGAACTGGATAAGCATGTGCAGATGAGGTTCCCCATTTTCGTGTAATTCTCTGCAAATTTTGATGAATAATTTGTTTACTGGGGTTTGTAAGGCTTGTATTTGGGATAGTGCTTCCTCTTTTGTGAGAGAGCACTTTGGATAAGTGAGGAAAAAATTTTTAGCAAAAATTTTAAAGCGACGTGGGGGAGCCATTTAGTCAATGTACACCGATTGACTATCGAGAGCATTTAGTGCTTGCAATCGGTGTATCGGTGTGCAATATATAGGTGTACACCAAATGGCATTTCCGTAATAAGTCTTATTGTAATTTAAATTTTGAAATTCCAAAAGCGGCCATCCGTATAATATT

Gene Information

NCBI Accession YP_009508199.1
Location 139-489
Gene Name v2
Protein Name V2 protein
Coding Region ATGTGGGATCCATTGTTAAATGAATTTCCGGACTCTGTGCATGGGTTTCGTTGTATGCTTGCCATAAAATATCTGCAGGCCGTTGAGCAAACTTATGAGCCCAATACATTGGGCCACGATTTAATTCGAGATTTAATTTCTGTGATTAGAGCCCGTGACTATGTCGAAGCGACCCGGAGATATAATCATTTCCACGCCCGTCTCGAAGGTGCGTCGAAGGCTGAACTTCGACAGCCCATATACCAGCCGTGCTGCTGCCCCCATTGTCCCAGGCACAAACAGACGTCGATCATGGACTTACAGGCCCATGTATCGAAAGCCCAGGATGTACAGAATGTACAGAAGCCCTGA
Protein Sequence MWDPLLNEFPDSVHGFRCMLAIKYLQAVEQTYEPNTLGHDLIRDLISVIRARDYVEATRRYNHFHARLEGASKAELRQPIYQPCCCPHCPRHKQTSIMDLQAHVSKAQDVQNVQKP

NCBI Accession YP_009508200.1
Location 299-1075
Gene Name cp
Protein Name coat protein
Coding Region ATGTCGAAGCGACCCGGAGATATAATCATTTCCACGCCCGTCTCGAAGGTGCGTCGAAGGCTGAACTTCGACAGCCCATATACCAGCCGTGCTGCTGCCCCCATTGTCCCAGGCACAAACAGACGTCGATCATGGACTTACAGGCCCATGTATCGAAAGCCCAGGATGTACAGAATGTACAGAAGCCCTGATGTTCCTCGTGGTTGTGAAGGCCCATGTAAGGTCCAGTCGTTTGAGCAGAGGGATGATGTTAAGCATACCGGTATTGTTCGTTGTGTTAGTGATGTTACGCGTGGTTCGGGTATTACCCATAGAGTTGGCAAGAGGTTTTGTGTTAAGTCCATTTACATTTTAGGGAAGATCTGGATGGATGAAAATATCAAGAAGCAGAATCATACTAATCAGGTTATGTTTTTCCTTGTTCGTGATAGAAGGCCCTATGGGCCTTCTCCAATGGATTTTGGACAGGTGTTCAACATGTTTGATAATGAGCCCAGTACAGCTACAGTGAAGAATGATTTGAGAGACAGATATCAAGTTATGCGGAAATTTCATGCAACTGTTGTTGGTGGACCCTCAGGGATGAGAGAGCAGACTTTAGTTAAGAGATTTTTTAGGATTAATAGTCATGTAACGTATAATCATCAGGAGCAGGCTAAGTATGAGAACCATACTGAGAACGCTTTGTTGTTGTATATGGCATGTACTCATGCTTCTAACCCAGTGTATGCTACTCTTAAGATACGGATCTATTTTTATGATTCGGTCAGCAATTAA
Protein Sequence MSKRPGDIIISTPVSKVRRRLNFDSPYTSRAAAPIVPGTNRRRSWTYRPMYRKPRMYRMYRSPDVPRGCEGPCKVQSFEQRDDVKHTGIVRCVSDVTRGSGITHRVGKRFCVKSIYILGKIWMDENIKKQNHTNQVMFFLVRDRRPYGPSPMDFGQVFNMFDNEPSTATVKNDLRDRYQVMRKFHATVVGGPSGMREQTLVKRFFRINSHVTYNHQEQAKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSVSN

NCBI Accession YP_009508201.1
Location 1072-1476
Gene Name c3
Protein Name C3 protein
Coding Region ATGGATTTACGCACAGGGGAACTCATCACTGCAGCTCAAGCACAGAGTGGCGTGTTTATCTGGGAGATACAAAATCCCCTATATTTCAAGATAATCGACCACAGCATCAGACCATTCAACATGAACCACGACATCATATCAATCCAGATACGGTTCAACCACAACATCAGGAAGGAACTGGGGATTCACAAATGTTTTCTCAACTTCAAGATCTGGACGAGCTTACGCCCTCAGACTGGTCGTTTCTTAAGAGTATTTAGGACTCAAGTTCTCATGTATTTAGATAGATTAGGAATTATTTCAATTAACAATGTAATAAGAGCAGTTGATTATGTATTGTACGATGTACTTGTAAATACACTCCAAGTTGAGGAGAATTATGAAATAAAATTCAATATTTATTAA
Protein Sequence MDLRTGELITAAQAQSGVFIWEIQNPLYFKIIDHSIRPFNMNHDIISIQIRFNHNIRKELGIHKCFLNFKIWTSLRPQTGRFLRVFRTQVLMYLDRLGIISINNVIRAVDYVLYDVLVNTLQVEENYEIKFNIY

NCBI Accession YP_009508202.1
Location 1217-1624
Gene Name c2
Protein Name C2 protein
Coding Region ATGCGACCTTCGTCACCCTCCACGAGCCATTGTTCTCAAGTACCAATCAAGGTCCACCACCGCATAGCCAAGAGGAAAGCAGTGAGGCGTAGAAGAATTGACCTAGACTGCGGTTGCTCCTATTATCTACACATCAACTGCACAAACCATGGATTTACGCACAGGGGAACTCATCACTGCAGCTCAAGCACAGAGTGGCGTGTTTATCTGGGAGATACAAAATCCCCTATATTTCAAGATAATCGACCACAGCATCAGACCATTCAACATGAACCACGACATCATATCAATCCAGATACGGTTCAACCACAACATCAGGAAGGAACTGGGGATTCACAAATGTTTTCTCAACTTCAAGATCTGGACGAGCTTACGCCCTCAGACTGGTCGTTTCTTAAGAGTATTTAG
Protein Sequence MRPSSPSTSHCSQVPIKVHHRIAKRKAVRRRRIDLDCGCSYYLHINCTNHGFTHRGTHHCSSSTEWRVYLGDTKSPIFQDNRPQHQTIQHEPRHHINPDTVQPQHQEGTGDSQMFSQLQDLDELTPSDWSFLKSI

NCBI Accession YP_009508203.1
Location 1533-2612
Gene Name rep
Protein Name replication associated protein
Coding Region ATGGCTCCCCCACGTCGCTTTAAAATTTTTGCTAAAAATTTTTTCCTCACTTATCCAAAGTGCTCTCTCACAAAAGAGGAAGCACTATCCCAAATACAAGCCTTACAAACCCCAGTAAACAAATTATTCATCAAAATTTGCAGAGAATTACACGAAAATGGGGAACCTCATCTGCACATGCTTATCCAGTTCGAAGGAAAGTACCAGTGCACGAATCAGAGATTCTTCGACCTTGTATCCCCAACAAGGCCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTACATCGACAAGGACGGAGACACCCTCGAATGGGGCGAGTTTCAGATCGATGGAAGATCTGCAAGAGGGGGACAACAATCCGCCAATGACGCTTACGCCACAGCTCTTAACGCAGGCAGTAAGTCAGAGGCTCTTAGAGTCATTAAGGAATTAGTCCCAAAAGATTATGTTTTACAATTTCATAATTTAAATAGTAATTTAGATAGGATTTTTAAGGAGCCTCCGGCTCCTTATGTTTCTCCATTTCTTTCTTCTTCTTTTAATCAAGTTCCCGAAGAACTTGAAGTTTGGGTGTCGGAGAACATCAGGGATGCCGCTGCGCGGCCGTGGAGACCGATTAGTATTGTAATTGAGGGTGATAGTAGGACGGGGAAGACGATGTGGGCCAGATCATTAGGACCCCACAACTATTTATGTGGTCATCTTGACCTGAGTCCTAAAGTCTACAGCAATGATGCATGGTTCAACATCATTGATGACGTGGACCCGCATTATTTAAAACATTTTAAAGAATTCATGGGGGCCCAAAGGGACTGGCAGAGCAACACAAAGTACGGGAAGCCAATTCAAATAAAAGGCGGAATTCCCACTATATTCCTCTGCAATCCAGGACCAACATCCTCTTATAAAGAATATCTAGACGAGGAGAAAAATGCACCACTAAAAGCCTGGGCACTGAAGAATGCGACCTTCGTCACCCTCCACGAGCCATTGTTCTCAAGTACCAATCAAGGTCCACCACCGCATAGCCAAGAGGAAAGCAGTGAGGCGTAG
Protein Sequence MAPPRRFKIFAKNFFLTYPKCSLTKEEALSQIQALQTPVNKLFIKICRELHENGEPHLHMLIQFEGKYQCTNQRFFDLVSPTRPAHFHPNIQGAKSSSDVKSYIDKDGDTLEWGEFQIDGRSARGGQQSANDAYATALNAGSKSEALRVIKELVPKDYVLQFHNLNSNLDRIFKEPPAPYVSPFLSSSFNQVPEELEVWVSENIRDAAARPWRPISIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWFNIIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLDEEKNAPLKAWALKNATFVTLHEPLFSSTNQGPPPHSQEESSEA

NCBI Accession YP_009508204.1
Location 2153-2455
Gene Name c4
Protein Name C4 protein
Coding Region ATGGGGAACCTCATCTGCACATGCTTATCCAGTTCGAAGGAAAGTACCAGTGCACGAATCAGAGATTCTTCGACCTTGTATCCCCAACAAGGCCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTACATCGACAAGGACGGAGACACCCTCGAATGGGGCGAGTTTCAGATCGATGGAAGATCTGCAAGAGGGGGACAACAATCCGCCAATGACGCTTACGCCACAGCTCTTAACGCAGGCAGTAAGTCAGAGGCTCTTAGAGTCATTAAGGAATTAG
Protein Sequence MGNLICTCLSSSKESTSARIRDSSTLYPQQGQHISIRTFRELNPAPTSSPTSTRTETPSNGASFRSMEDLQEGDNNPPMTLTPQLLTQAVSQRLLESLRN