Tomato leaf curl Namakely virus
Basic Information
Genus |
Begomovirus
|
NCBI Assembly |
GCF_002987045.1 |
Isolate |
Madagascar:Antsiranana, Namakely |
Release date |
2018/8/26 |
Submitter |
Lefeuvre,P., Martin,D.P., Hoareau,M., Naze,F., Becker,N., Delatte,H., Reynaud,B., Lett,J.M. |
Host |
|
Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGCCCCCGAAAAAGGAATGTGGTCCCCACGCACTAGTCTATGTCAGCCAATCAGAATAGCGCTTGAAAGCTTAGTTATTTGTTTTTGTCTTTATATACTTGGGCCGTAAGTTGTTTAAAGTGCAACATGTGGGATCCATTGTTAAATGAATTTCCGGACTCTGTGCATGGGTTTCGTTGTATGCTTGCCATAAAATATCTGCAGGCCGTTGAGCAAACTTATGAGCCCAATACATTGGGCCACGATTTAATTCGAGATTTAATTTCTGTGATTAGAGCCCGTGACTATGTCGAAGCGACCCGGAGATATAATCATTTCCACGCCCGTCTCGAAGGTGCGTCGAAGGCTGAACTTCGACAGCCCATATACCAGCCGTGCTGCTGCCCCCATTGTCCCAGGCACAAACAGACGTCGATCATGGACTTACAGGCCCATGTATCGAAAGCCCAGGATGTACAGAATGTACAGAAGCCCTGATGTTCCTCGTGGTTGTGAAGGCCCATGTAAGGTCCAGTCGTTTGAGCAGAGGGATGATGTTAAGCATACCGGTATTGTTCGTTGTGTTAGTGATGTTACGCGTGGTTCGGGTATTACCCATAGAGTTGGCAAGAGGTTTTGTGTTAAGTCCATTTACATTTTAGGGAAGATCTGGATGGATGAAAATATCAAGAAGCAGAATCATACTAATCAGGTTATGTTTTTCCTTGTTCGTGATAGAAGGCCCTATGGGCCTTCTCCAATGGATTTTGGACAGGTGTTCAACATGTTTGATAATGAGCCCAGTACAGCTACAGTGAAGAATGATTTGAGAGACAGATATCAAGTTATGCGGAAATTTCATGCAACTGTTGTTGGTGGACCCTCAGGGATGAGAGAGCAGACTTTAGTTAAGAGATTTTTTAGGATTAATAGTCATGTAACGTATAATCATCAGGAGCAGGCTAAGTATGAGAACCATACTGAGAACGCTTTGTTGTTGTATATGGCATGTACTCATGCTTCTAACCCAGTGTATGCTACTCTTAAGATACGGATCTATTTTTATGATTCGGTCAGCAATTAATAAATATTGAATTTTATTTCATAATTCTCCTCAACTTGGAGTGTATTTACAAGTACATCGTACAATACATAATCAACTGCTCTTATTACATTGTTAATTGAAATAATTCCTAATCTATCTAAATACATGAGAACTTGAGTCCTAAATACTCTTAAGAAACGACCAGTCTGAGGGCGTAAGCTCGTCCAGATCTTGAAGTTGAGAAAACATTTGTGAATCCCCAGTTCCTTCCTGATGTTGTGGTTGAACCGTATCTGGATTGATATGATGTCGTGGTTCATGTTGAATGGTCTGATGCTGTGGTCGATTATCTTGAAATATAGGGGATTTTGTATCTCCCAGATAAACACGCCACTCTGTGCTTGAGCTGCAGTGATGAGTTCCCCTGTGCGTAAATCCATGGTTTGTGCAGTTGATGTGTAGATAATAGGAGCAACCGCAGTCTAGGTCAATTCTTCTACGCCTCACTGCTTTCCTCTTGGCTATGCGGTGGTGGACCTTGATTGGTACTTGAGAACAATGGCTCGTGGAGGGTGACGAAGGTCGCATTCTTCAGTGCCCAGGCTTTTAGTGGTGCATTTTTCTCCTCGTCTAGATATTCTTTATAAGAGGATGTTGGTCCTGGATTGCAGAGGAATATAGTGGGAATTCCGCCTTTTATTTGAATTGGCTTCCCGTACTTTGTGTTGCTCTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAATGTTTTAAATAATGCGGGTCCACGTCATCAATGATGTTGAACCATGCATCATTGCTGTAGACTTTAGGACTCAGGTCAAGATGACCACATAAATAGTTGTGGGGTCCTAATGATCTGGCCCACATCGTCTTCCCCGTCCTACTATCACCCTCAATTACAATACTAATCGGTCTCCACGGCCGCGCAGCGGCATCCCTGATGTTCTCCGACACCCAAACTTCAAGTTCTTCGGGAACTTGATTAAAAGAAGAAGAAAGAAATGGAGAAACATAAGGAGCCGGAGGCTCCTTAAAAATCCTATCTAAATTACTATTTAAATTATGAAATTGTAAAACATAATCTTTTGGGACTAATTCCTTAATGACTCTAAGAGCCTCTGACTTACTGCCTGCGTTAAGAGCTGTGGCGTAAGCGTCATTGGCGGATTGTTGTCCCCCTCTTGCAGATCTTCCATCGATCTGAAACTCGCCCCATTCGAGGGTGTCTCCGTCCTTGTCGATGTAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGGCCTTGTTGGGGATACAAGGTCGAAGAATCTCTGATTCGTGCACTGGTACTTTCCTTCGAACTGGATAAGCATGTGCAGATGAGGTTCCCCATTTTCGTGTAATTCTCTGCAAATTTTGATGAATAATTTGTTTACTGGGGTTTGTAAGGCTTGTATTTGGGATAGTGCTTCCTCTTTTGTGAGAGAGCACTTTGGATAAGTGAGGAAAAAATTTTTAGCAAAAATTTTAAAGCGACGTGGGGGAGCCATTTAGTCAATGTACACCGATTGACTATCGAGAGCATTTAGTGCTTGCAATCGGTGTATCGGTGTGCAATATATAGGTGTACACCAAATGGCATTTCCGTAATAAGTCTTATTGTAATTTAAATTTTGAAATTCCAAAAGCGGCCATCCGTATAATATT
Gene Information
NCBI Accession
|
YP_009508199.1
|
Location
|
139-489 |
Gene Name
|
v2 |
Protein Name
|
V2 protein |
Coding Region
|
ATGTGGGATCCATTGTTAAATGAATTTCCGGACTCTGTGCATGGGTTTCGTTGTATGCTTGCCATAAAATATCTGCAGGCCGTTGAGCAAACTTATGAGCCCAATACATTGGGCCACGATTTAATTCGAGATTTAATTTCTGTGATTAGAGCCCGTGACTATGTCGAAGCGACCCGGAGATATAATCATTTCCACGCCCGTCTCGAAGGTGCGTCGAAGGCTGAACTTCGACAGCCCATATACCAGCCGTGCTGCTGCCCCCATTGTCCCAGGCACAAACAGACGTCGATCATGGACTTACAGGCCCATGTATCGAAAGCCCAGGATGTACAGAATGTACAGAAGCCCTGA |
Protein Sequence
|
MWDPLLNEFPDSVHGFRCMLAIKYLQAVEQTYEPNTLGHDLIRDLISVIRARDYVEATRRYNHFHARLEGASKAELRQPIYQPCCCPHCPRHKQTSIMDLQAHVSKAQDVQNVQKP |
NCBI Accession
|
YP_009508200.1
|
Location
|
299-1075 |
Gene Name
|
cp |
Protein Name
|
coat protein |
Coding Region
|
ATGTCGAAGCGACCCGGAGATATAATCATTTCCACGCCCGTCTCGAAGGTGCGTCGAAGGCTGAACTTCGACAGCCCATATACCAGCCGTGCTGCTGCCCCCATTGTCCCAGGCACAAACAGACGTCGATCATGGACTTACAGGCCCATGTATCGAAAGCCCAGGATGTACAGAATGTACAGAAGCCCTGATGTTCCTCGTGGTTGTGAAGGCCCATGTAAGGTCCAGTCGTTTGAGCAGAGGGATGATGTTAAGCATACCGGTATTGTTCGTTGTGTTAGTGATGTTACGCGTGGTTCGGGTATTACCCATAGAGTTGGCAAGAGGTTTTGTGTTAAGTCCATTTACATTTTAGGGAAGATCTGGATGGATGAAAATATCAAGAAGCAGAATCATACTAATCAGGTTATGTTTTTCCTTGTTCGTGATAGAAGGCCCTATGGGCCTTCTCCAATGGATTTTGGACAGGTGTTCAACATGTTTGATAATGAGCCCAGTACAGCTACAGTGAAGAATGATTTGAGAGACAGATATCAAGTTATGCGGAAATTTCATGCAACTGTTGTTGGTGGACCCTCAGGGATGAGAGAGCAGACTTTAGTTAAGAGATTTTTTAGGATTAATAGTCATGTAACGTATAATCATCAGGAGCAGGCTAAGTATGAGAACCATACTGAGAACGCTTTGTTGTTGTATATGGCATGTACTCATGCTTCTAACCCAGTGTATGCTACTCTTAAGATACGGATCTATTTTTATGATTCGGTCAGCAATTAA |
Protein Sequence
|
MSKRPGDIIISTPVSKVRRRLNFDSPYTSRAAAPIVPGTNRRRSWTYRPMYRKPRMYRMYRSPDVPRGCEGPCKVQSFEQRDDVKHTGIVRCVSDVTRGSGITHRVGKRFCVKSIYILGKIWMDENIKKQNHTNQVMFFLVRDRRPYGPSPMDFGQVFNMFDNEPSTATVKNDLRDRYQVMRKFHATVVGGPSGMREQTLVKRFFRINSHVTYNHQEQAKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSVSN |
NCBI Accession
|
YP_009508201.1
|
Location
|
1072-1476 |
Gene Name
|
c3 |
Protein Name
|
C3 protein |
Coding Region
|
ATGGATTTACGCACAGGGGAACTCATCACTGCAGCTCAAGCACAGAGTGGCGTGTTTATCTGGGAGATACAAAATCCCCTATATTTCAAGATAATCGACCACAGCATCAGACCATTCAACATGAACCACGACATCATATCAATCCAGATACGGTTCAACCACAACATCAGGAAGGAACTGGGGATTCACAAATGTTTTCTCAACTTCAAGATCTGGACGAGCTTACGCCCTCAGACTGGTCGTTTCTTAAGAGTATTTAGGACTCAAGTTCTCATGTATTTAGATAGATTAGGAATTATTTCAATTAACAATGTAATAAGAGCAGTTGATTATGTATTGTACGATGTACTTGTAAATACACTCCAAGTTGAGGAGAATTATGAAATAAAATTCAATATTTATTAA |
Protein Sequence
|
MDLRTGELITAAQAQSGVFIWEIQNPLYFKIIDHSIRPFNMNHDIISIQIRFNHNIRKELGIHKCFLNFKIWTSLRPQTGRFLRVFRTQVLMYLDRLGIISINNVIRAVDYVLYDVLVNTLQVEENYEIKFNIY |
NCBI Accession
|
YP_009508202.1
|
Location
|
1217-1624 |
Gene Name
|
c2 |
Protein Name
|
C2 protein |
Coding Region
|
ATGCGACCTTCGTCACCCTCCACGAGCCATTGTTCTCAAGTACCAATCAAGGTCCACCACCGCATAGCCAAGAGGAAAGCAGTGAGGCGTAGAAGAATTGACCTAGACTGCGGTTGCTCCTATTATCTACACATCAACTGCACAAACCATGGATTTACGCACAGGGGAACTCATCACTGCAGCTCAAGCACAGAGTGGCGTGTTTATCTGGGAGATACAAAATCCCCTATATTTCAAGATAATCGACCACAGCATCAGACCATTCAACATGAACCACGACATCATATCAATCCAGATACGGTTCAACCACAACATCAGGAAGGAACTGGGGATTCACAAATGTTTTCTCAACTTCAAGATCTGGACGAGCTTACGCCCTCAGACTGGTCGTTTCTTAAGAGTATTTAG |
Protein Sequence
|
MRPSSPSTSHCSQVPIKVHHRIAKRKAVRRRRIDLDCGCSYYLHINCTNHGFTHRGTHHCSSSTEWRVYLGDTKSPIFQDNRPQHQTIQHEPRHHINPDTVQPQHQEGTGDSQMFSQLQDLDELTPSDWSFLKSI |
NCBI Accession
|
YP_009508203.1
|
Location
|
1533-2612 |
Gene Name
|
rep |
Protein Name
|
replication associated protein |
Coding Region
|
ATGGCTCCCCCACGTCGCTTTAAAATTTTTGCTAAAAATTTTTTCCTCACTTATCCAAAGTGCTCTCTCACAAAAGAGGAAGCACTATCCCAAATACAAGCCTTACAAACCCCAGTAAACAAATTATTCATCAAAATTTGCAGAGAATTACACGAAAATGGGGAACCTCATCTGCACATGCTTATCCAGTTCGAAGGAAAGTACCAGTGCACGAATCAGAGATTCTTCGACCTTGTATCCCCAACAAGGCCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTACATCGACAAGGACGGAGACACCCTCGAATGGGGCGAGTTTCAGATCGATGGAAGATCTGCAAGAGGGGGACAACAATCCGCCAATGACGCTTACGCCACAGCTCTTAACGCAGGCAGTAAGTCAGAGGCTCTTAGAGTCATTAAGGAATTAGTCCCAAAAGATTATGTTTTACAATTTCATAATTTAAATAGTAATTTAGATAGGATTTTTAAGGAGCCTCCGGCTCCTTATGTTTCTCCATTTCTTTCTTCTTCTTTTAATCAAGTTCCCGAAGAACTTGAAGTTTGGGTGTCGGAGAACATCAGGGATGCCGCTGCGCGGCCGTGGAGACCGATTAGTATTGTAATTGAGGGTGATAGTAGGACGGGGAAGACGATGTGGGCCAGATCATTAGGACCCCACAACTATTTATGTGGTCATCTTGACCTGAGTCCTAAAGTCTACAGCAATGATGCATGGTTCAACATCATTGATGACGTGGACCCGCATTATTTAAAACATTTTAAAGAATTCATGGGGGCCCAAAGGGACTGGCAGAGCAACACAAAGTACGGGAAGCCAATTCAAATAAAAGGCGGAATTCCCACTATATTCCTCTGCAATCCAGGACCAACATCCTCTTATAAAGAATATCTAGACGAGGAGAAAAATGCACCACTAAAAGCCTGGGCACTGAAGAATGCGACCTTCGTCACCCTCCACGAGCCATTGTTCTCAAGTACCAATCAAGGTCCACCACCGCATAGCCAAGAGGAAAGCAGTGAGGCGTAG |
Protein Sequence
|
MAPPRRFKIFAKNFFLTYPKCSLTKEEALSQIQALQTPVNKLFIKICRELHENGEPHLHMLIQFEGKYQCTNQRFFDLVSPTRPAHFHPNIQGAKSSSDVKSYIDKDGDTLEWGEFQIDGRSARGGQQSANDAYATALNAGSKSEALRVIKELVPKDYVLQFHNLNSNLDRIFKEPPAPYVSPFLSSSFNQVPEELEVWVSENIRDAAARPWRPISIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWFNIIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLDEEKNAPLKAWALKNATFVTLHEPLFSSTNQGPPPHSQEESSEA |
NCBI Accession
|
YP_009508204.1
|
Location
|
2153-2455 |
Gene Name
|
c4 |
Protein Name
|
C4 protein |
Coding Region
|
ATGGGGAACCTCATCTGCACATGCTTATCCAGTTCGAAGGAAAGTACCAGTGCACGAATCAGAGATTCTTCGACCTTGTATCCCCAACAAGGCCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTACATCGACAAGGACGGAGACACCCTCGAATGGGGCGAGTTTCAGATCGATGGAAGATCTGCAAGAGGGGGACAACAATCCGCCAATGACGCTTACGCCACAGCTCTTAACGCAGGCAGTAAGTCAGAGGCTCTTAGAGTCATTAAGGAATTAG |
Protein Sequence
|
MGNLICTCLSSSKESTSARIRDSSTLYPQQGQHISIRTFRELNPAPTSSPTSTRTETPSNGASFRSMEDLQEGDNNPPMTLTPQLLTQAVSQRLLESLRN |