Tomato leaf curl Mindanao virus


Basic Information

Genus Begomovirus
NCBI Assembly GCF_000872745.1
Isolate Philippines: Mindanao
Release date 2015/2/13
Submitter Tsai,W.S., Shih,S.L., Venkatesan,S.G., Aquino,M.U., Green,S.K., Kenyon,L., Jan,F.J., Aquino,M., Huang,Y.C., Jan,F.-J.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_010440
ACCGGATGGCCGCGATTTTTTTGGTGGTCACTATCACTAACTTTTGTCTGCCAATAGAAACGCTCCCTCAAAGCTTATTTAATATGTGGTCCCCTATTTAAAGATTGCTCACTAAGTTGTTTCCCAAACATGTGGGATCCGTTAGTTAATGAGTTTCCCGATACCGTTCATGGTTTCAGGTGTATGTTAGCCGTAAAATACTTGCAGTTAGTAGAATCTACGTATTCACCAGATACGCTTGGGTACGATCTTATCCGAGATTTAATTTCCGTCGTCCGTGCAAAAAACTATGTCGAAGCGTCCCGCCGATATAGTCATTTCCACTCCCGCATCGAAGGTACGTCGCCGTCTCAATTTCGACAGCCCTTACACGAGCCGTGCTGCTGCCCCCACTGTCCTCGTCACCAACAAAAGGAGAACATGGTCCAACAGGCCCATGTACAGGAAGCCCAGAATGTACAGAATGTACAGAAGCCCTGATGTGCCCAAAGGTTGTGAAGGCCCATGTAAGGTCCAATCGTATGAACAGAGGCACGACATATCCCATGTTGGTAAAGTATTATGTGTTAGTGATGTCACTCGTGGCAGTGGGCTTACCCATCGAGTTGGTAAGAGATTCTGTGTGAAGTCCGTCTATGTATTGGGTAAAATATGGATGGATGAAAATATCAAAACCAAGAACCATACGAACACTGTGATGTTTTATCTTGTTCGTGATAGAAGGCCCTATGGTACTGCTATGGAATTTGGTCAGGTGTTTAACATGTATGATAATGAGCCCAGTACTGCTACTATCAAGAATGATCTTCGAGATCGTTATCAGGTTTTAAGAAAATTCACCTCAACGGTCACAGGCGGTCAATATGCTTCTAAGGAACAGGCGTTGGTTAGGAAATTTATGAAGGTTAATAATTATGTAGTTTATAATCATCAAGAGGCTGCTAAGTATGACAATCATACTGAGAATGCCTTGTTATTGTATATGGCTTGTACTCATGCCAGTAATCCAGTGTATGCTACTTTGAAGATCAGAATCTATTTCTATGATTCTCTTCAGAATTAATAAAGATTGAATTTTATTATACTTGAAAGTTGTACATCGATTGTTCTTTCCAATACATTCCATAATACATGAGAAACTGCCCTAATTACATTGTTAATGCTGATTACACCCAAATTATCTAAATACTTCATACATTGATATTTAAAGACTCTTAAGAAACGCCAAGTCTGAGGTTGTAAGCGAGTCCAAATCTGGAAAATCAGAAAACACTGGTGTATTCCCAACGCTTTCCTCAGGTTGTGGTTGAACTGTATCTGGATCGTTATGATGTCGTGGTTGTTGTTGAATGATCTCTCGTGGTGTTTGGTGATCTTGAAATATAGGGGATTTTTGATTGTCCAGGTATACACGCCACTCTCGCATTGAGTTGCAGTGAGTAATTCCCCTGTGCGAAAATCCATGATTTGCACAATCTATGCCGAAGTAGTATGAGCAACCGCAAGGAAGATCAACTCTCCGTCTGCGAACAGGCCTCTTCTTGGCTATTCTGTGTTGGACTTTGATGGGTACCTGAGTACAATGGGCTTGTGAGGGTGATGAATTCTGCATTCTTTAGTGCCCAATCTTTTAATGCTGAATTTTTATTTTCGTCCAAGTACTCTTTATATGATGATGTTGGTCCCGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAATGGGCTTCCCGTACTTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAATGCTTTAGATAGTGGGGGTSGACGTCATCAATGACGTTGTACCAAGCATCATTACTGTAGACCTTTGGACTTAAGTCCAGATGTCCACATAAGTAATTGTGTGGACCCAGTGACCTAGCCCACATCGTCTTCCCTGTCCTACTATCGCCCTCTATTACAATACTTTTAGGTCTCCAAGGCCGCGCAGCGGCATCCCTTACATTCTCAGAGACCCAATCTTCAAGTTCTTCTGGAACTTGATTAAAAGAAGAAGAAAGAAAAGGACAAACAAAAACCTCTAAAGGAGGTGCGAAAATCCTATCTAAATTATTATTTAAATTATGAAATTGTAAAACAAAATCTTTAGGAGCTAATTCCTTAATTACATTAAGAGCCTCCGACTTACTTCCTGCGTTAAGCGCCTTGGCGTAAGCATCATTGGCTGATTGTTGTCCCCCTCGTGCAGATCGTGCGTCGATCTGGAATTCACCCCATTCGAGAGTGTCTCCGTCCTTGTCGATATAGGACTTGACGTCGGAGCTTGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGAAGGGGATACAAGGTCGAAGAATCGTGAATTTGTGCATCTGTATTTCCCTTCGAACTGTACGAGCACGTGGAGATGAGGGCTCCCATCTTCGTGAAGTTCTCTGCAGATTCTGATATATTTTTTATTTGTTGGGGTTTGTATATTTTGTATTTGGGAAAGTGCTTCCTCTTTGGTTAGAGAGCACTGTGGATATGTGAGGAAATAATTTTTGGCATTTATTTGGAATTTTCTCGGTGGTGCCATTTGACTTAGTCAATGGGTACCCAATGAGAGGATTTCCTAATGCTCTGGGTATCGGTACATTGGTACCCATCTATACTCGGTTACCTAATGGCATTAATGTAATTTCTAGAGAAATTCAAAATTTTAATTTTAAATCCAAAAGCGGCCATCCGTATAATATT

Gene Information

NCBI Accession YP_001718624.1
Location 130-480
Gene Name V2
Protein Name pre-coat protein
Coding Region ATGTGGGATCCGTTAGTTAATGAGTTTCCCGATACCGTTCATGGTTTCAGGTGTATGTTAGCCGTAAAATACTTGCAGTTAGTAGAATCTACGTATTCACCAGATACGCTTGGGTACGATCTTATCCGAGATTTAATTTCCGTCGTCCGTGCAAAAAACTATGTCGAAGCGTCCCGCCGATATAGTCATTTCCACTCCCGCATCGAAGGTACGTCGCCGTCTCAATTTCGACAGCCCTTACACGAGCCGTGCTGCTGCCCCCACTGTCCTCGTCACCAACAAAAGGAGAACATGGTCCAACAGGCCCATGTACAGGAAGCCCAGAATGTACAGAATGTACAGAAGCCCTGA
Protein Sequence MWDPLVNEFPDTVHGFRCMLAVKYLQLVESTYSPDTLGYDLIRDLISVVRAKNYVEASRRYSHFHSRIEGTSPSQFRQPLHEPCCCPHCPRHQQKENMVQQAHVQEAQNVQNVQKP

NCBI Accession YP_001718625.1
Location 290-1063
Gene Name V1
Protein Name coat protein
Coding Region ATGTCGAAGCGTCCCGCCGATATAGTCATTTCCACTCCCGCATCGAAGGTACGTCGCCGTCTCAATTTCGACAGCCCTTACACGAGCCGTGCTGCTGCCCCCACTGTCCTCGTCACCAACAAAAGGAGAACATGGTCCAACAGGCCCATGTACAGGAAGCCCAGAATGTACAGAATGTACAGAAGCCCTGATGTGCCCAAAGGTTGTGAAGGCCCATGTAAGGTCCAATCGTATGAACAGAGGCACGACATATCCCATGTTGGTAAAGTATTATGTGTTAGTGATGTCACTCGTGGCAGTGGGCTTACCCATCGAGTTGGTAAGAGATTCTGTGTGAAGTCCGTCTATGTATTGGGTAAAATATGGATGGATGAAAATATCAAAACCAAGAACCATACGAACACTGTGATGTTTTATCTTGTTCGTGATAGAAGGCCCTATGGTACTGCTATGGAATTTGGTCAGGTGTTTAACATGTATGATAATGAGCCCAGTACTGCTACTATCAAGAATGATCTTCGAGATCGTTATCAGGTTTTAAGAAAATTCACCTCAACGGTCACAGGCGGTCAATATGCTTCTAAGGAACAGGCGTTGGTTAGGAAATTTATGAAGGTTAATAATTATGTAGTTTATAATCATCAAGAGGCTGCTAAGTATGACAATCATACTGAGAATGCCTTGTTATTGTATATGGCTTGTACTCATGCCAGTAATCCAGTGTATGCTACTTTGAAGATCAGAATCTATTTCTATGATTCTCTTCAGAATTAA
Protein Sequence MSKRPADIVISTPASKVRRRLNFDSPYTSRAAAPTVLVTNKRRTWSNRPMYRKPRMYRMYRSPDVPKGCEGPCKVQSYEQRHDISHVGKVLCVSDVTRGSGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNTVMFYLVRDRRPYGTAMEFGQVFNMYDNEPSTATIKNDLRDRYQVLRKFTSTVTGGQYASKEQALVRKFMKVNNYVVYNHQEAAKYDNHTENALLLYMACTHASNPVYATLKIRIYFYDSLQN

NCBI Accession YP_001718626.1
Location 1060-1464
Gene Name C3
Protein Name C3 protein
Coding Region ATGGATTTTCGCACAGGGGAATTACTCACTGCAACTCAATGCGAGAGTGGCGTGTATACCTGGACAATCAAAAATCCCCTATATTTCAAGATCACCAAACACCACGAGAGATCATTCAACAACAACCACGACATCATAACGATCCAGATACAGTTCAACCACAACCTGAGGAAAGCGTTGGGAATACACCAGTGTTTTCTGATTTTCCAGATTTGGACTCGCTTACAACCTCAGACTTGGCGTTTCTTAAGAGTCTTTAAATATCAATGTATGAAGTATTTAGATAATTTGGGTGTAATCAGCATTAACAATGTAATTAGGGCAGTTTCTCATGTATTATGGAATGTATTGGAAAGAACAATCGATGTACAACTTTCAAGTATAATAAAATTCAATCTTTATTAA
Protein Sequence MDFRTGELLTATQCESGVYTWTIKNPLYFKITKHHERSFNNNHDIITIQIQFNHNLRKALGIHQCFLIFQIWTRLQPQTWRFLRVFKYQCMKYLDNLGVISINNVIRAVSHVLWNVLERTIDVQLSSIIKFNLY

NCBI Accession YP_001718627.1
Location 1205-1612
Gene Name C2
Protein Name C2 protein
Coding Region ATGCAGAATTCATCACCCTCACAAGCCCATTGTACTCAGGTACCCATCAAAGTCCAACACAGAATAGCCAAGAAGAGGCCTGTTCGCAGACGGAGAGTTGATCTTCCTTGCGGTTGCTCATACTACTTCGGCATAGATTGTGCAAATCATGGATTTTCGCACAGGGGAATTACTCACTGCAACTCAATGCGAGAGTGGCGTGTATACCTGGACAATCAAAAATCCCCTATATTTCAAGATCACCAAACACCACGAGAGATCATTCAACAACAACCACGACATCATAACGATCCAGATACAGTTCAACCACAACCTGAGGAAAGCGTTGGGAATACACCAGTGTTTTCTGATTTTCCAGATTTGGACTCGCTTACAACCTCAGACTTGGCGTTTCTTAAGAGTCTTTAA
Protein Sequence MQNSSPSQAHCTQVPIKVQHRIAKKRPVRRRRVDLPCGCSYYFGIDCANHGFSHRGITHCNSMREWRVYLDNQKSPIFQDHQTPREIIQQQPRHHNDPDTVQPQPEESVGNTPVFSDFPDLDSLTTSDLAFLKSL

NCBI Accession YP_001718628.1
Location 1512-2600
Gene Name C1
Protein Name replication-associated protein
Coding Region ATGGCACCACCGAGAAAATTCCAAATAAATGCCAAAAATTATTTCCTCACATATCCACAGTGCTCTCTAACCAAAGAGGAAGCACTTTCCCAAATACAAAATATACAAACCCCAACAAATAAAAAATATATCAGAATCTGCAGAGAACTTCACGAAGATGGGAGCCCTCATCTCCACGTGCTCGTACAGTTCGAAGGGAAATACAGATGCACAAATTCACGATTCTTCGACCTTGTATCCCCTTCCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCAAGCTCCGACGTCAAGTCCTATATCGACAAGGACGGAGACACTCTCGAATGGGGTGAATTCCAGATCGACGCACGATCTGCACGAGGGGGACAACAATCAGCCAATGATGCTTACGCCAAGGCGCTTAACGCAGGAAGTAAGTCGGAGGCTCTTAATGTAATTAAGGAATTAGCTCCTAAAGATTTTGTTTTACAATTTCATAATTTAAATAATAATTTAGATAGGATTTTCGCACCTCCTTTAGAGGTTTTTGTTTGTCCTTTTCTTTCTTCTTCTTTTAATCAAGTTCCAGAAGAACTTGAAGATTGGGTCTCTGAGAATGTAAGGGATGCCGCTGCGCGGCCTTGGAGACCTAAAAGTATTGTAATAGAGGGCGATAGTAGGACAGGGAAGACGATGTGGGCTAGGTCACTGGGTCCACACAATTACTTATGTGGACATCTGGACTTAAGTCCAAAGGTCTACAGTAATGATGCTTGGTACAACGTCATTGATGACGTCSACCCCCACTATCTAAAGCATTTTAAAGAATTCATGGGGGCCCAAAGGGACTGGCAAAGCAACACCAAGTACGGGAAGCCCATTCAAATTAAAGGTGGAATTCCCACTATCTTCCTCTGCAATCCGGGACCAACATCATCATATAAAGAGTACTTGGACGAAAATAAAAATTCAGCATTAAAAGATTGGGCACTAAAGAATGCAGAATTCATCACCCTCACAAGCCCATTGTACTCAGGTACCCATCAAAGTCCAACACAGAATAGCCAAGAAGAGGCCTGTTCGCAGACGGAGAGTTGA
Protein Sequence MAPPRKFQINAKNYFLTYPQCSLTKEEALSQIQNIQTPTNKKYIRICRELHEDGSPHLHVLVQFEGKYRCTNSRFFDLVSPSRSAHFHPNIQGAKSSSDVKSYIDKDGDTLEWGEFQIDARSARGGQQSANDAYAKALNAGSKSEALNVIKELAPKDFVLQFHNLNNNLDRIFAPPLEVFVCPFLSSSFNQVPEELEDWVSENVRDAAARPWRPKSIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVXPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLDENKNSALKDWALKNAEFITLTSPLYSGTHQSPTQNSQEEACSQTES

NCBI Accession YP_001718629.1
Location 2153-2443
Gene Name C4
Protein Name C4 protein
Coding Region ATGGGAGCCCTCATCTCCACGTGCTCGTACAGTTCGAAGGGAAATACAGATGCACAAATTCACGATTCTTCGACCTTGTATCCCCTTCCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCAAGCTCCGACGTCAAGTCCTATATCGACAAGGACGGAGACACTCTCGAATGGGGTGAATTCCAGATCGACGCACGATCTGCACGAGGGGGACAACAATCAGCCAATGATGCTTACGCCAAGGCGCTTAACGCAGGAAGTAAGTCGGAGGCTCTTAATGTAA
Protein Sequence MGALISTCSYSSKGNTDAQIHDSSTLYPLPGQHISIRTFRELNQAPTSSPISTRTETLSNGVNSRSTHDLHEGDNNQPMMLTPRRLTQEVSRRLLM