Tomato leaf curl Mindanao virus
Basic Information
Genus |
Begomovirus
|
NCBI Assembly |
GCF_000872745.1 |
Isolate |
Philippines: Mindanao |
Release date |
2015/2/13 |
Submitter |
Tsai,W.S., Shih,S.L., Venkatesan,S.G., Aquino,M.U., Green,S.K., Kenyon,L., Jan,F.J., Aquino,M., Huang,Y.C., Jan,F.-J. |
Host |
|
Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGATTTTTTTGGTGGTCACTATCACTAACTTTTGTCTGCCAATAGAAACGCTCCCTCAAAGCTTATTTAATATGTGGTCCCCTATTTAAAGATTGCTCACTAAGTTGTTTCCCAAACATGTGGGATCCGTTAGTTAATGAGTTTCCCGATACCGTTCATGGTTTCAGGTGTATGTTAGCCGTAAAATACTTGCAGTTAGTAGAATCTACGTATTCACCAGATACGCTTGGGTACGATCTTATCCGAGATTTAATTTCCGTCGTCCGTGCAAAAAACTATGTCGAAGCGTCCCGCCGATATAGTCATTTCCACTCCCGCATCGAAGGTACGTCGCCGTCTCAATTTCGACAGCCCTTACACGAGCCGTGCTGCTGCCCCCACTGTCCTCGTCACCAACAAAAGGAGAACATGGTCCAACAGGCCCATGTACAGGAAGCCCAGAATGTACAGAATGTACAGAAGCCCTGATGTGCCCAAAGGTTGTGAAGGCCCATGTAAGGTCCAATCGTATGAACAGAGGCACGACATATCCCATGTTGGTAAAGTATTATGTGTTAGTGATGTCACTCGTGGCAGTGGGCTTACCCATCGAGTTGGTAAGAGATTCTGTGTGAAGTCCGTCTATGTATTGGGTAAAATATGGATGGATGAAAATATCAAAACCAAGAACCATACGAACACTGTGATGTTTTATCTTGTTCGTGATAGAAGGCCCTATGGTACTGCTATGGAATTTGGTCAGGTGTTTAACATGTATGATAATGAGCCCAGTACTGCTACTATCAAGAATGATCTTCGAGATCGTTATCAGGTTTTAAGAAAATTCACCTCAACGGTCACAGGCGGTCAATATGCTTCTAAGGAACAGGCGTTGGTTAGGAAATTTATGAAGGTTAATAATTATGTAGTTTATAATCATCAAGAGGCTGCTAAGTATGACAATCATACTGAGAATGCCTTGTTATTGTATATGGCTTGTACTCATGCCAGTAATCCAGTGTATGCTACTTTGAAGATCAGAATCTATTTCTATGATTCTCTTCAGAATTAATAAAGATTGAATTTTATTATACTTGAAAGTTGTACATCGATTGTTCTTTCCAATACATTCCATAATACATGAGAAACTGCCCTAATTACATTGTTAATGCTGATTACACCCAAATTATCTAAATACTTCATACATTGATATTTAAAGACTCTTAAGAAACGCCAAGTCTGAGGTTGTAAGCGAGTCCAAATCTGGAAAATCAGAAAACACTGGTGTATTCCCAACGCTTTCCTCAGGTTGTGGTTGAACTGTATCTGGATCGTTATGATGTCGTGGTTGTTGTTGAATGATCTCTCGTGGTGTTTGGTGATCTTGAAATATAGGGGATTTTTGATTGTCCAGGTATACACGCCACTCTCGCATTGAGTTGCAGTGAGTAATTCCCCTGTGCGAAAATCCATGATTTGCACAATCTATGCCGAAGTAGTATGAGCAACCGCAAGGAAGATCAACTCTCCGTCTGCGAACAGGCCTCTTCTTGGCTATTCTGTGTTGGACTTTGATGGGTACCTGAGTACAATGGGCTTGTGAGGGTGATGAATTCTGCATTCTTTAGTGCCCAATCTTTTAATGCTGAATTTTTATTTTCGTCCAAGTACTCTTTATATGATGATGTTGGTCCCGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAATGGGCTTCCCGTACTTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAATGCTTTAGATAGTGGGGGTSGACGTCATCAATGACGTTGTACCAAGCATCATTACTGTAGACCTTTGGACTTAAGTCCAGATGTCCACATAAGTAATTGTGTGGACCCAGTGACCTAGCCCACATCGTCTTCCCTGTCCTACTATCGCCCTCTATTACAATACTTTTAGGTCTCCAAGGCCGCGCAGCGGCATCCCTTACATTCTCAGAGACCCAATCTTCAAGTTCTTCTGGAACTTGATTAAAAGAAGAAGAAAGAAAAGGACAAACAAAAACCTCTAAAGGAGGTGCGAAAATCCTATCTAAATTATTATTTAAATTATGAAATTGTAAAACAAAATCTTTAGGAGCTAATTCCTTAATTACATTAAGAGCCTCCGACTTACTTCCTGCGTTAAGCGCCTTGGCGTAAGCATCATTGGCTGATTGTTGTCCCCCTCGTGCAGATCGTGCGTCGATCTGGAATTCACCCCATTCGAGAGTGTCTCCGTCCTTGTCGATATAGGACTTGACGTCGGAGCTTGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGAAGGGGATACAAGGTCGAAGAATCGTGAATTTGTGCATCTGTATTTCCCTTCGAACTGTACGAGCACGTGGAGATGAGGGCTCCCATCTTCGTGAAGTTCTCTGCAGATTCTGATATATTTTTTATTTGTTGGGGTTTGTATATTTTGTATTTGGGAAAGTGCTTCCTCTTTGGTTAGAGAGCACTGTGGATATGTGAGGAAATAATTTTTGGCATTTATTTGGAATTTTCTCGGTGGTGCCATTTGACTTAGTCAATGGGTACCCAATGAGAGGATTTCCTAATGCTCTGGGTATCGGTACATTGGTACCCATCTATACTCGGTTACCTAATGGCATTAATGTAATTTCTAGAGAAATTCAAAATTTTAATTTTAAATCCAAAAGCGGCCATCCGTATAATATT
Gene Information
NCBI Accession
|
YP_001718624.1
|
Location
|
130-480 |
Gene Name
|
V2 |
Protein Name
|
pre-coat protein |
Coding Region
|
ATGTGGGATCCGTTAGTTAATGAGTTTCCCGATACCGTTCATGGTTTCAGGTGTATGTTAGCCGTAAAATACTTGCAGTTAGTAGAATCTACGTATTCACCAGATACGCTTGGGTACGATCTTATCCGAGATTTAATTTCCGTCGTCCGTGCAAAAAACTATGTCGAAGCGTCCCGCCGATATAGTCATTTCCACTCCCGCATCGAAGGTACGTCGCCGTCTCAATTTCGACAGCCCTTACACGAGCCGTGCTGCTGCCCCCACTGTCCTCGTCACCAACAAAAGGAGAACATGGTCCAACAGGCCCATGTACAGGAAGCCCAGAATGTACAGAATGTACAGAAGCCCTGA |
Protein Sequence
|
MWDPLVNEFPDTVHGFRCMLAVKYLQLVESTYSPDTLGYDLIRDLISVVRAKNYVEASRRYSHFHSRIEGTSPSQFRQPLHEPCCCPHCPRHQQKENMVQQAHVQEAQNVQNVQKP |
NCBI Accession
|
YP_001718625.1
|
Location
|
290-1063 |
Gene Name
|
V1 |
Protein Name
|
coat protein |
Coding Region
|
ATGTCGAAGCGTCCCGCCGATATAGTCATTTCCACTCCCGCATCGAAGGTACGTCGCCGTCTCAATTTCGACAGCCCTTACACGAGCCGTGCTGCTGCCCCCACTGTCCTCGTCACCAACAAAAGGAGAACATGGTCCAACAGGCCCATGTACAGGAAGCCCAGAATGTACAGAATGTACAGAAGCCCTGATGTGCCCAAAGGTTGTGAAGGCCCATGTAAGGTCCAATCGTATGAACAGAGGCACGACATATCCCATGTTGGTAAAGTATTATGTGTTAGTGATGTCACTCGTGGCAGTGGGCTTACCCATCGAGTTGGTAAGAGATTCTGTGTGAAGTCCGTCTATGTATTGGGTAAAATATGGATGGATGAAAATATCAAAACCAAGAACCATACGAACACTGTGATGTTTTATCTTGTTCGTGATAGAAGGCCCTATGGTACTGCTATGGAATTTGGTCAGGTGTTTAACATGTATGATAATGAGCCCAGTACTGCTACTATCAAGAATGATCTTCGAGATCGTTATCAGGTTTTAAGAAAATTCACCTCAACGGTCACAGGCGGTCAATATGCTTCTAAGGAACAGGCGTTGGTTAGGAAATTTATGAAGGTTAATAATTATGTAGTTTATAATCATCAAGAGGCTGCTAAGTATGACAATCATACTGAGAATGCCTTGTTATTGTATATGGCTTGTACTCATGCCAGTAATCCAGTGTATGCTACTTTGAAGATCAGAATCTATTTCTATGATTCTCTTCAGAATTAA |
Protein Sequence
|
MSKRPADIVISTPASKVRRRLNFDSPYTSRAAAPTVLVTNKRRTWSNRPMYRKPRMYRMYRSPDVPKGCEGPCKVQSYEQRHDISHVGKVLCVSDVTRGSGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNTVMFYLVRDRRPYGTAMEFGQVFNMYDNEPSTATIKNDLRDRYQVLRKFTSTVTGGQYASKEQALVRKFMKVNNYVVYNHQEAAKYDNHTENALLLYMACTHASNPVYATLKIRIYFYDSLQN |
NCBI Accession
|
YP_001718626.1
|
Location
|
1060-1464 |
Gene Name
|
C3 |
Protein Name
|
C3 protein |
Coding Region
|
ATGGATTTTCGCACAGGGGAATTACTCACTGCAACTCAATGCGAGAGTGGCGTGTATACCTGGACAATCAAAAATCCCCTATATTTCAAGATCACCAAACACCACGAGAGATCATTCAACAACAACCACGACATCATAACGATCCAGATACAGTTCAACCACAACCTGAGGAAAGCGTTGGGAATACACCAGTGTTTTCTGATTTTCCAGATTTGGACTCGCTTACAACCTCAGACTTGGCGTTTCTTAAGAGTCTTTAAATATCAATGTATGAAGTATTTAGATAATTTGGGTGTAATCAGCATTAACAATGTAATTAGGGCAGTTTCTCATGTATTATGGAATGTATTGGAAAGAACAATCGATGTACAACTTTCAAGTATAATAAAATTCAATCTTTATTAA |
Protein Sequence
|
MDFRTGELLTATQCESGVYTWTIKNPLYFKITKHHERSFNNNHDIITIQIQFNHNLRKALGIHQCFLIFQIWTRLQPQTWRFLRVFKYQCMKYLDNLGVISINNVIRAVSHVLWNVLERTIDVQLSSIIKFNLY |
NCBI Accession
|
YP_001718627.1
|
Location
|
1205-1612 |
Gene Name
|
C2 |
Protein Name
|
C2 protein |
Coding Region
|
ATGCAGAATTCATCACCCTCACAAGCCCATTGTACTCAGGTACCCATCAAAGTCCAACACAGAATAGCCAAGAAGAGGCCTGTTCGCAGACGGAGAGTTGATCTTCCTTGCGGTTGCTCATACTACTTCGGCATAGATTGTGCAAATCATGGATTTTCGCACAGGGGAATTACTCACTGCAACTCAATGCGAGAGTGGCGTGTATACCTGGACAATCAAAAATCCCCTATATTTCAAGATCACCAAACACCACGAGAGATCATTCAACAACAACCACGACATCATAACGATCCAGATACAGTTCAACCACAACCTGAGGAAAGCGTTGGGAATACACCAGTGTTTTCTGATTTTCCAGATTTGGACTCGCTTACAACCTCAGACTTGGCGTTTCTTAAGAGTCTTTAA |
Protein Sequence
|
MQNSSPSQAHCTQVPIKVQHRIAKKRPVRRRRVDLPCGCSYYFGIDCANHGFSHRGITHCNSMREWRVYLDNQKSPIFQDHQTPREIIQQQPRHHNDPDTVQPQPEESVGNTPVFSDFPDLDSLTTSDLAFLKSL |
NCBI Accession
|
YP_001718628.1
|
Location
|
1512-2600 |
Gene Name
|
C1 |
Protein Name
|
replication-associated protein |
Coding Region
|
ATGGCACCACCGAGAAAATTCCAAATAAATGCCAAAAATTATTTCCTCACATATCCACAGTGCTCTCTAACCAAAGAGGAAGCACTTTCCCAAATACAAAATATACAAACCCCAACAAATAAAAAATATATCAGAATCTGCAGAGAACTTCACGAAGATGGGAGCCCTCATCTCCACGTGCTCGTACAGTTCGAAGGGAAATACAGATGCACAAATTCACGATTCTTCGACCTTGTATCCCCTTCCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCAAGCTCCGACGTCAAGTCCTATATCGACAAGGACGGAGACACTCTCGAATGGGGTGAATTCCAGATCGACGCACGATCTGCACGAGGGGGACAACAATCAGCCAATGATGCTTACGCCAAGGCGCTTAACGCAGGAAGTAAGTCGGAGGCTCTTAATGTAATTAAGGAATTAGCTCCTAAAGATTTTGTTTTACAATTTCATAATTTAAATAATAATTTAGATAGGATTTTCGCACCTCCTTTAGAGGTTTTTGTTTGTCCTTTTCTTTCTTCTTCTTTTAATCAAGTTCCAGAAGAACTTGAAGATTGGGTCTCTGAGAATGTAAGGGATGCCGCTGCGCGGCCTTGGAGACCTAAAAGTATTGTAATAGAGGGCGATAGTAGGACAGGGAAGACGATGTGGGCTAGGTCACTGGGTCCACACAATTACTTATGTGGACATCTGGACTTAAGTCCAAAGGTCTACAGTAATGATGCTTGGTACAACGTCATTGATGACGTCSACCCCCACTATCTAAAGCATTTTAAAGAATTCATGGGGGCCCAAAGGGACTGGCAAAGCAACACCAAGTACGGGAAGCCCATTCAAATTAAAGGTGGAATTCCCACTATCTTCCTCTGCAATCCGGGACCAACATCATCATATAAAGAGTACTTGGACGAAAATAAAAATTCAGCATTAAAAGATTGGGCACTAAAGAATGCAGAATTCATCACCCTCACAAGCCCATTGTACTCAGGTACCCATCAAAGTCCAACACAGAATAGCCAAGAAGAGGCCTGTTCGCAGACGGAGAGTTGA |
Protein Sequence
|
MAPPRKFQINAKNYFLTYPQCSLTKEEALSQIQNIQTPTNKKYIRICRELHEDGSPHLHVLVQFEGKYRCTNSRFFDLVSPSRSAHFHPNIQGAKSSSDVKSYIDKDGDTLEWGEFQIDARSARGGQQSANDAYAKALNAGSKSEALNVIKELAPKDFVLQFHNLNNNLDRIFAPPLEVFVCPFLSSSFNQVPEELEDWVSENVRDAAARPWRPKSIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVXPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLDENKNSALKDWALKNAEFITLTSPLYSGTHQSPTQNSQEEACSQTES |
NCBI Accession
|
YP_001718629.1
|
Location
|
2153-2443 |
Gene Name
|
C4 |
Protein Name
|
C4 protein |
Coding Region
|
ATGGGAGCCCTCATCTCCACGTGCTCGTACAGTTCGAAGGGAAATACAGATGCACAAATTCACGATTCTTCGACCTTGTATCCCCTTCCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCAAGCTCCGACGTCAAGTCCTATATCGACAAGGACGGAGACACTCTCGAATGGGGTGAATTCCAGATCGACGCACGATCTGCACGAGGGGGACAACAATCAGCCAATGATGCTTACGCCAAGGCGCTTAACGCAGGAAGTAAGTCGGAGGCTCTTAATGTAA |
Protein Sequence
|
MGALISTCSYSSKGNTDAQIHDSSTLYPLPGQHISIRTFRELNQAPTSSPISTRTETLSNGVNSRSTHDLHEGDNNQPMMLTPRRLTQEVSRRLLM |