Tomato leaf curl Mahe virus
Basic Information
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGCCCCCAAAAAAAGAAGTGGGCCCCGTGCACTAAGAGGGCCCCGCGCACTACCTCTATCGGCCAATCAGATAGGCGAGTCATAGCTTAGTTATTTGAATGGTTGTCTTTATATACTTGCTGGCGAAGTAGTTGGCTTTGTCAGTATGTGGGACCCACTTTTAAACGAGTTCCCAGACTCTGTTCACGGGTTCCGTTGTATGCTTGCTATTAAATATTTGCAGGCCGTGGAAGAAACTTACGAGCCCAACACACTGGGTTACGATCTAATCCGTGATCTTTTCGGTGTTATTAGGGCCCGTGATTATGTCCAAGCGACCCGGAGATATAATCATTTCCACACCCGTCTCGAAGGTTCGTCGAAGGCTGAACTTCGACAGCCCTTACACGAACCGTGCTGCTGCCCCCACTGTCCGCGTCACCAGAAGCAGAATATGGGCCAACAGGCCCATTTATCGGAAGCCCAGGATGTACAGAATGTATCGAAGCCCAGATGTCCCTAAGGGCTGTGAAGGCCCATGTAAGGTCCAATCGTATGAGCAGAGGGATGATGTCAAGCATACCGGTATTGTTCGTTGTGTTAGTGATGTTACCCGTGGGTCGGGTATTACTCATAGAGTTGGCAAGAGGTTTTGTGTTAAGTCTATATACATTTTAGGTAAGATCTGGATGGATGATAATATCAAAAAGCAGAATCATACTAATCAGGTTATGTTTTTCCTTGTTCGTGATAGAAGGCCCTATGGCTTGTCCCCAATGGATTTTGGACAGGTGTTCAACATGTTTGATAATGAGCCCAGTACAGCTACCGTGAAGAATGATTTGAGAGACAGATATCAGGTCATGAGGAAATTTCATGCAACTGTTGTTGGTGGGCCCTCAGGGATGAAGGAACAGGCATTAGTTAAGAGATTTTTTAGGATTAATAGCCACGTAACATATAATCATCAGGAGGCAGCTAAATACGAGAATCATACTGAGAATGCTTTGTTGTTGTATATGGCATGTACTCATGCTTCTAATCCAGTGTATGCTACTCTTAAGATACGGATCTATTTCTATGATTCGATCGGTAATTAATAAATATTAAATTTTATTTCATGGTTCTCCGTAACTTGGAGTGTATTTACAAATACATCGTGTAATACATAATCAACTGCTCTAATTATTGCATTAATTGAAATGACACCTAAAGAATCTAAATACTTGAGAACTTGGGTCCTAAATACGCTTAAGAAACGACCAGTCTGAGGGCGTAAGCTCGTCCAGACCTTGAAGTTCAGAAAACACTTGTGAATCTCCAACACCTTCCTTAGGTTGTGGTTGAACCGTATCTGGATTGATATGATGTCGTGGTTCGTGTTGAATGCCCGGCTGTCGTGATTGATTATCTTGAAATAGAGGGGATTTTGTATCTCCCAGATAAACACGCCACTCTGTGCTTGAGCTGCAGTAATGAGTTCCCCGGTGCGTAAATCCATAGTTCGCACAGTTAACGTGAATATAGTATGAGCAGCCGCAGCCTAGGTCTATGCGCTTACGTCGGATGGCTCTAGTCTTCGCTATGCGGTGTTGGACCTTGATTGGTATTTGTGAACAATGGCTTGTGGAGGGAGACGAAGGTTGCATTCTTGATGGCCCAGTCTTTTAGTTGTGTATGTTTCTCCTCGTCTAGATATTCTTTATACGAGGATGTTGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAATGGGCTTCCCGTACTTGGTGTTGCTTTGCCAGTCCCTCTGGGCCCCCATGAATTCTTTAAAATGCTTTAGATAATGCGGGTCTACGTCATCAATGACGTTGTACCACGCATCATTGCTGTACACCTTTGGACTCAGGTCAAGATGACCACACAAATAGTTGTGGGGTCCTAATGACCTGGCCCACATCGTCTTGCCGGTTCGACTATCACCCTCAATAACAATACTAATCGGTCTCCACGGCCGCGCAGCGGCATCCATGACATTCTCAGCCACCCATACTTCAAGTTCGTCCGGAACCTGATTAAAAGAAGAAGAAAGAAAAGGAGAAACATAAGGAGCCGGAGGCTCCTGAAAAATCCTATTTGCGTTAGCAGATATATTATGGAACTGTAAAAAAAAGGACTTGGGATCTTTTTCTTTAATTATTTGAAGAGCTTCTGATTTAGAAGAAGCGTTCAATGCGTCTGCATATACTTCGGCTAAATGCTGGCCCTCCCCCCTTGCACTTCTGGCATCGACCTGGAAAATTCCATCGTCAAGAAATTCCCCTCCCTTTTCAATGTAGGCTTTGACATCGGACGATGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGTTGATCTGGAAGGGGAAATGAGATCGAAGAATCTCTGGTTTGTACATTGGAACTTGCCTTCGAATTGGATGAGAACATGGAGATGAGGCACCCCATCCTGATGTAGTTCTCTGCAAACCCTAATGAATTTGATATTCGTCGGGTAAGAAAGCGTTTTCAATTGGGAAAGGGCCTCTTCCTTTGTTAATGAGCATTTGGGATAGGTGATGAAATAATTTTTGGCATGTATTTGAAAACGACCTGCTCTTGGCATATTTTCTGTCGTTTTGGATTGGTGGACACTCAAAACTCCATGATAACGGTGGAATGGTGGGCAATATATATGATGTCCACCAATGGCATATGTGTAAATAGGTAGACTTCCATTTGAAATTTGTAATTTCAAAATTCCCAAAGCGGCCATCCGTATAATATT
Gene Information
NCBI Accession
|
YP_010086863.1
|
Location
|
158-514 |
Protein Name
|
movement protein |
Coding Region
|
ATGTGGGACCCACTTTTAAACGAGTTCCCAGACTCTGTTCACGGGTTCCGTTGTATGCTTGCTATTAAATATTTGCAGGCCGTGGAAGAAACTTACGAGCCCAACACACTGGGTTACGATCTAATCCGTGATCTTTTCGGTGTTATTAGGGCCCGTGATTATGTCCAAGCGACCCGGAGATATAATCATTTCCACACCCGTCTCGAAGGTTCGTCGAAGGCTGAACTTCGACAGCCCTTACACGAACCGTGCTGCTGCCCCCACTGTCCGCGTCACCAGAAGCAGAATATGGGCCAACAGGCCCATTTATCGGAAGCCCAGGATGTACAGAATGTATCGAAGCCCAGATGTCCCTAA |
Protein Sequence
|
MWDPLLNEFPDSVHGFRCMLAIKYLQAVEETYEPNTLGYDLIRDLFGVIRARDYVQATRRYNHFHTRLEGSSKAELRQPLHEPCCCPHCPRHQKQNMGQQAHLSEAQDVQNVSKPRCP |
NCBI Accession
|
YP_010086864.1
|
Location
|
318-1091 |
Protein Name
|
capsid protein |
Coding Region
|
ATGTCCAAGCGACCCGGAGATATAATCATTTCCACACCCGTCTCGAAGGTTCGTCGAAGGCTGAACTTCGACAGCCCTTACACGAACCGTGCTGCTGCCCCCACTGTCCGCGTCACCAGAAGCAGAATATGGGCCAACAGGCCCATTTATCGGAAGCCCAGGATGTACAGAATGTATCGAAGCCCAGATGTCCCTAAGGGCTGTGAAGGCCCATGTAAGGTCCAATCGTATGAGCAGAGGGATGATGTCAAGCATACCGGTATTGTTCGTTGTGTTAGTGATGTTACCCGTGGGTCGGGTATTACTCATAGAGTTGGCAAGAGGTTTTGTGTTAAGTCTATATACATTTTAGGTAAGATCTGGATGGATGATAATATCAAAAAGCAGAATCATACTAATCAGGTTATGTTTTTCCTTGTTCGTGATAGAAGGCCCTATGGCTTGTCCCCAATGGATTTTGGACAGGTGTTCAACATGTTTGATAATGAGCCCAGTACAGCTACCGTGAAGAATGATTTGAGAGACAGATATCAGGTCATGAGGAAATTTCATGCAACTGTTGTTGGTGGGCCCTCAGGGATGAAGGAACAGGCATTAGTTAAGAGATTTTTTAGGATTAATAGCCACGTAACATATAATCATCAGGAGGCAGCTAAATACGAGAATCATACTGAGAATGCTTTGTTGTTGTATATGGCATGTACTCATGCTTCTAATCCAGTGTATGCTACTCTTAAGATACGGATCTATTTCTATGATTCGATCGGTAATTAA |
Protein Sequence
|
MSKRPGDIIISTPVSKVRRRLNFDSPYTNRAAAPTVRVTRSRIWANRPIYRKPRMYRMYRSPDVPKGCEGPCKVQSYEQRDDVKHTGIVRCVSDVTRGSGITHRVGKRFCVKSIYILGKIWMDDNIKKQNHTNQVMFFLVRDRRPYGLSPMDFGQVFNMFDNEPSTATVKNDLRDRYQVMRKFHATVVGGPSGMKEQALVKRFFRINSHVTYNHQEAAKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSIGN |
NCBI Accession
|
YP_010086865.1
|
Location
|
1088-1492 |
Protein Name
|
replication enhancer protein |
Coding Region
|
ATGGATTTACGCACCGGGGAACTCATTACTGCAGCTCAAGCACAGAGTGGCGTGTTTATCTGGGAGATACAAAATCCCCTCTATTTCAAGATAATCAATCACGACAGCCGGGCATTCAACACGAACCACGACATCATATCAATCCAGATACGGTTCAACCACAACCTAAGGAAGGTGTTGGAGATTCACAAGTGTTTTCTGAACTTCAAGGTCTGGACGAGCTTACGCCCTCAGACTGGTCGTTTCTTAAGCGTATTTAGGACCCAAGTTCTCAAGTATTTAGATTCTTTAGGTGTCATTTCAATTAATGCAATAATTAGAGCAGTTGATTATGTATTACACGATGTATTTGTAAATACACTCCAAGTTACGGAGAACCATGAAATAAAATTTAATATTTATTAA |
Protein Sequence
|
MDLRTGELITAAQAQSGVFIWEIQNPLYFKIINHDSRAFNTNHDIISIQIRFNHNLRKVLEIHKCFLNFKVWTSLRPQTGRFLSVFRTQVLKYLDSLGVISINAIIRAVDYVLHDVFVNTLQVTENHEIKFNIY |
NCBI Accession
|
YP_010086866.1
|
Location
|
1233-1640 |
Protein Name
|
transcriptional activator protein |
Coding Region
|
ATGCAACCTTCGTCTCCCTCCACAAGCCATTGTTCACAAATACCAATCAAGGTCCAACACCGCATAGCGAAGACTAGAGCCATCCGACGTAAGCGCATAGACCTAGGCTGCGGCTGCTCATACTATATTCACGTTAACTGTGCGAACTATGGATTTACGCACCGGGGAACTCATTACTGCAGCTCAAGCACAGAGTGGCGTGTTTATCTGGGAGATACAAAATCCCCTCTATTTCAAGATAATCAATCACGACAGCCGGGCATTCAACACGAACCACGACATCATATCAATCCAGATACGGTTCAACCACAACCTAAGGAAGGTGTTGGAGATTCACAAGTGTTTTCTGAACTTCAAGGTCTGGACGAGCTTACGCCCTCAGACTGGTCGTTTCTTAAGCGTATTTAG |
Protein Sequence
|
MQPSSPSTSHCSQIPIKVQHRIAKTRAIRRKRIDLGCGCSYYIHVNCANYGFTHRGTHYCSSSTEWRVYLGDTKSPLFQDNQSRQPGIQHEPRHHINPDTVQPQPKEGVGDSQVFSELQGLDELTPSDWSFLKRI |
NCBI Accession
|
YP_010086867.1
|
Location
|
1564-2628 |
Protein Name
|
replication associated protein |
Coding Region
|
ATGCCAAGAGCAGGTCGTTTTCAAATACATGCCAAAAATTATTTCATCACCTATCCCAAATGCTCATTAACAAAGGAAGAGGCCCTTTCCCAATTGAAAACGCTTTCTTACCCGACGAATATCAAATTCATTAGGGTTTGCAGAGAACTACATCAGGATGGGGTGCCTCATCTCCATGTTCTCATCCAATTCGAAGGCAAGTTCCAATGTACAAACCAGAGATTCTTCGATCTCATTTCCCCTTCCAGATCAACACATTTCCATCCGAACATTCAGGGAGCTAAATCATCGTCCGATGTCAAAGCCTACATTGAAAAGGGAGGGGAATTTCTTGACGATGGAATTTTCCAGGTCGATGCCAGAAGTGCAAGGGGGGAGGGCCAGCATTTAGCCGAAGTATATGCAGACGCATTGAACGCTTCTTCTAAATCAGAAGCTCTTCAAATAATTAAAGAAAAAGATCCCAAGTCCTTTTTTTTACAGTTCCATAATATATCTGCTAACGCAAATAGGATTTTTCAGGAGCCTCCGGCTCCTTATGTTTCTCCTTTTCTTTCTTCTTCTTTTAATCAGGTTCCGGACGAACTTGAAGTATGGGTGGCTGAGAATGTCATGGATGCCGCTGCGCGGCCGTGGAGACCGATTAGTATTGTTATTGAGGGTGATAGTCGAACCGGCAAGACGATGTGGGCCAGGTCATTAGGACCCCACAACTATTTGTGTGGTCATCTTGACCTGAGTCCAAAGGTGTACAGCAATGATGCGTGGTACAACGTCATTGATGACGTAGACCCGCATTATCTAAAGCATTTTAAAGAATTCATGGGGGCCCAGAGGGACTGGCAAAGCAACACCAAGTACGGGAAGCCCATTCAAATTAAAGGCGGAATTCCCACTATCTTCCTCTGCAATCCAGGACCAACATCCTCGTATAAAGAATATCTAGACGAGGAGAAACATACACAACTAAAAGACTGGGCCATCAAGAATGCAACCTTCGTCTCCCTCCACAAGCCATTGTTCACAAATACCAATCAAGGTCCAACACCGCATAGCGAAGACTAG |
Protein Sequence
|
MPRAGRFQIHAKNYFITYPKCSLTKEEALSQLKTLSYPTNIKFIRVCRELHQDGVPHLHVLIQFEGKFQCTNQRFFDLISPSRSTHFHPNIQGAKSSSDVKAYIEKGGEFLDDGIFQVDARSARGEGQHLAEVYADALNASSKSEALQIIKEKDPKSFFLQFHNISANANRIFQEPPAPYVSPFLSSSFNQVPDELEVWVAENVMDAAARPWRPISIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLDEEKHTQLKDWAIKNATFVSLHKPLFTNTNQGPTPHSED |
NCBI Accession
|
YP_010086868.1
|
Location
|
2238-2471 |
Protein Name
|
C4 protein |
Coding Region
|
ATGGGGTGCCTCATCTCCATGTTCTCATCCAATTCGAAGGCAAGTTCCAATGTACAAACCAGAGATTCTTCGATCTCATTTCCCCTTCCAGATCAACACATTTCCATCCGAACATTCAGGGAGCTAAATCATCGTCCGATGTCAAAGCCTACATTGAAAAGGGAGGGGAATTTCTTGACGATGGAATTTTCCAGGTCGATGCCAGAAGTGCAAGGGGGGAGGGCCAGCATTTAG |
Protein Sequence
|
MGCLISMFSSNSKASSNVQTRDSSISFPLPDQHISIRTFRELNHRPMSKPTLKREGNFLTMEFSRSMPEVQGGRASI |