Tomato leaf curl Madagascar virus


Basic Information

Genus Begomovirus
NCBI Assembly GCF_000857385.1
Isolate Madagascar:Morondova,2001
Release date 2015/2/13
Submitter Delatte,H., Martin,D.P., Naze,F., Goldbach,R., Reynaud,B., Peterschmitt,M., Lett,J.M.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_006874
ACCGGATGGCCGCGCCCCCGAAAAAGAAGTGGTCCCCCCCACTATACTATGTCGTCCAATGAAATTGTGTCCTGGAAGGTTATTTATTGGGTTTTGTCCTTATATACTTGGCCGCTAAGTTTGTGGGCCTGTCACAATGTGGGATCCATTGTTAAATGAGTTCCCTGATTCTGTTCATGGTTTTCGTTGTATGCTTGCTGTAAAATATTTGCAGGCCGTTGAGGAAACGTATGAGCCCAACACTTTGGGCCACGATTTAATTCGCGATCTTATCTCTGTTATTAGGGCTCGTGACTATGTCGAAGCGACCCGGCGATATAATCATTTCCACGCCCGTCTCGAAGGTTCGTCGAAGGCTGAACTTCGACAGCCCATATACCAACCGTGTTGCTGTCCCCATTGCCCCCGCCACAAACAGGCGTCGGTCATGGACTTACCGGCCCATGTACCGAAAGCCCAGGATGTACAGAATGTACAGAAGCCCTGATGTTCCTAAGGGCTGTGAAGGCCCATGTAAGGTCCAGTCATTTGAGCAAAGGGATGATGTGAAGCATACGGGTATTGCTCGCTGTGTTAGCGATGTGACGCGTGGTTCGGGTATCACTCATAGGGTTGGTAAGAGATTTTGTATTAAGTCCATTTACATTTTAGGTAAAGTATGGATGGATGAAAATATAAAGAAGCAGAATCACACGAACAACGTGATGTTCTTCTTGGTCCGAGATCGCAGGCCCAGTGGATCAGCGCCCATGGACTTTGGGCAGGTGTTTAACATGTTTGACAATGAGCCCAGTACTGCGACTGTGAAGAATGATTTGCGAGATAGGTTACAGGTTTTGCGCAAGTTTCATGCTACCGTTGTTGGTGGTCCTTCTGGGATGAAGGAACAGGCTTTAGTTAAGAGATTTTATAGGATTAATAATCATGTAGTTTATAATCACCAGGAGGCAGCGAAGTATGAAAATCATACTGAGAATGCGTTGTTGTTGTATATGGCTTGTACTCATTATTCCAATCCCGTGTACGCTACATTGAAAATACGCATCTATTTCTATGATGCAGTGACAAATTAATAAATATTAAATTTTATTTCATGATCCTCCAAAACCTGGAGTGTATTTACAAGTACATCATACAATACATGATCAACTGCCCTAATTACAGTATTAATTGAAATAACACCTAATCTATCTAAATATCTGAGGACCTGAATTCTAAATACCCTTAAGAAACGACCAGTCTGAGGCCGTAAGGTCGTCCAGACCTTGAAGTTGAGAAAACATTTGTGAATCCCCAGTTCCTTCCTGAGGTTGTGGTTGAATCTTATCTGGATGTTGATGATGTCGTGGTTCATGTTGAATGGCCTTATTTCGTGGCTGGTGATCGTGAAATAGAGGGGATTGTTTATCTCCCAGATAAACACGCCATTCTGTGCCTGAGGAGCAGTGATGAGTTCCCCTGTGCGTGAATCCATGGTTGGAGCAGTCGATGTGGAGATAATATGAGCAGCCGCAGTCTAGGTCAACCCGTTTACGCCGTATGGTTCTCTTCTTCGCTATACGGTGTTGGACCTTGATTGGCACTTGTGAACAATGGCTCGTGGAGGGTGACGAAGGTCGCATTCTTAATTGCCCACTGCTTGAGTGCTGCGTTCCTTTCCTCGTCCAGAAATTCTTTATAGGACGACGTTGGGCCTGGATTGCATAGGAAGATTGTGGGAATTCCGCCTTTAATTTGAATTGGCTTCCCGTACTTTGTGTTGCTTTGCCAGTCCCTCTGCGCTCCCATAAATTCCTTAAAGTGCTTTAGATAATGCGGGTCTACGTCATCAATGACGTTGTACCACGCATCATTGCTGTACACCTTTGGGCTGAGATCAAGATGGCCACATAAATAGTTATGTGGTCCCAATGACCTGGCCCACATTGTCTTTCCGGTACGACTATCACCCTCGATTACAATACTATTCGGTCTCCACGGCCGCGCAGCGGCATCCATCACGTTCTCACTCACCCACTCTTCAAGTTCTTCCGGAACTTGATTAAAAGAAGAAGATAAAAAAGGAGAAACATAAGGAGCCGGAGGCTCCTGAAAAATCCTATCTAAATTACTATTTAAATTATGAAATTGTAAAACAAAATCCTTAGGGGCTAATTCCTTAATGACTCTAAGAGCCTCTGACTTACTGCCTGCGTTAAGAGCTGCGGCGTAAGCGTCATTGGCTGATTGTTGCCCTCCCCTTGCAGATCTGCCATCAATTTGAAATTCTCCCCATTCGATGGTGTCTCCGTCCTTGTCGATATAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGATACCAGGTCGAAGAATCTCTGATTCGTGCACTGGTACTTACCTTCGAATTGGATAAGCACATGGAGGTGAGGTTCCCCATTCTCGTGAAGCTCTCTGCAAATTTTGATGAACAGTTTATTTACTGGGGTTTGTAGGGATTGTATTTGGGAAAGTGTTTCCTCTTTGGTGAGAGAGCACTTTGGATAAGTGAGGAAATAATTTTTTGCGCAAATTTTAAATCGACGTAGAGGAGCCATTTAGTCAATGTACTCCGATTGACCACTAATTCATTTGCTGTCTGCAATCGGAGTATTGGTGGCCAATATATAGGTGTACTCCAAATGGCATTATGGTAAATAGCTAAAGTTTTTTAATTTTGAAATTCAAAATTTGAAATTCTAAAAGCGGCCATCCGTATAATATT

Gene Information

NCBI Accession YP_213931.1
Location 137-487
Gene Name AV2
Protein Name putative AV2 protein
Coding Region ATGTGGGATCCATTGTTAAATGAGTTCCCTGATTCTGTTCATGGTTTTCGTTGTATGCTTGCTGTAAAATATTTGCAGGCCGTTGAGGAAACGTATGAGCCCAACACTTTGGGCCACGATTTAATTCGCGATCTTATCTCTGTTATTAGGGCTCGTGACTATGTCGAAGCGACCCGGCGATATAATCATTTCCACGCCCGTCTCGAAGGTTCGTCGAAGGCTGAACTTCGACAGCCCATATACCAACCGTGTTGCTGTCCCCATTGCCCCCGCCACAAACAGGCGTCGGTCATGGACTTACCGGCCCATGTACCGAAAGCCCAGGATGTACAGAATGTACAGAAGCCCTGA
Protein Sequence MWDPLLNEFPDSVHGFRCMLAVKYLQAVEETYEPNTLGHDLIRDLISVIRARDYVEATRRYNHFHARLEGSSKAELRQPIYQPCCCPHCPRHKQASVMDLPAHVPKAQDVQNVQKP

NCBI Accession YP_213932.1
Location 297-1073
Gene Name AV1
Protein Name coat protein
Coding Region ATGTCGAAGCGACCCGGCGATATAATCATTTCCACGCCCGTCTCGAAGGTTCGTCGAAGGCTGAACTTCGACAGCCCATATACCAACCGTGTTGCTGTCCCCATTGCCCCCGCCACAAACAGGCGTCGGTCATGGACTTACCGGCCCATGTACCGAAAGCCCAGGATGTACAGAATGTACAGAAGCCCTGATGTTCCTAAGGGCTGTGAAGGCCCATGTAAGGTCCAGTCATTTGAGCAAAGGGATGATGTGAAGCATACGGGTATTGCTCGCTGTGTTAGCGATGTGACGCGTGGTTCGGGTATCACTCATAGGGTTGGTAAGAGATTTTGTATTAAGTCCATTTACATTTTAGGTAAAGTATGGATGGATGAAAATATAAAGAAGCAGAATCACACGAACAACGTGATGTTCTTCTTGGTCCGAGATCGCAGGCCCAGTGGATCAGCGCCCATGGACTTTGGGCAGGTGTTTAACATGTTTGACAATGAGCCCAGTACTGCGACTGTGAAGAATGATTTGCGAGATAGGTTACAGGTTTTGCGCAAGTTTCATGCTACCGTTGTTGGTGGTCCTTCTGGGATGAAGGAACAGGCTTTAGTTAAGAGATTTTATAGGATTAATAATCATGTAGTTTATAATCACCAGGAGGCAGCGAAGTATGAAAATCATACTGAGAATGCGTTGTTGTTGTATATGGCTTGTACTCATTATTCCAATCCCGTGTACGCTACATTGAAAATACGCATCTATTTCTATGATGCAGTGACAAATTAA
Protein Sequence MSKRPGDIIISTPVSKVRRRLNFDSPYTNRVAVPIAPATNRRRSWTYRPMYRKPRMYRMYRSPDVPKGCEGPCKVQSFEQRDDVKHTGIARCVSDVTRGSGITHRVGKRFCIKSIYILGKVWMDENIKKQNHTNNVMFFLVRDRRPSGSAPMDFGQVFNMFDNEPSTATVKNDLRDRLQVLRKFHATVVGGPSGMKEQALVKRFYRINNHVVYNHQEAAKYENHTENALLLYMACTHYSNPVYATLKIRIYFYDAVTN

NCBI Accession YP_213933.1
Location 1070-1474
Gene Name AC3
Protein Name replication enhancer protein
Coding Region ATGGATTCACGCACAGGGGAACTCATCACTGCTCCTCAGGCACAGAATGGCGTGTTTATCTGGGAGATAAACAATCCCCTCTATTTCACGATCACCAGCCACGAAATAAGGCCATTCAACATGAACCACGACATCATCAACATCCAGATAAGATTCAACCACAACCTCAGGAAGGAACTGGGGATTCACAAATGTTTTCTCAACTTCAAGGTCTGGACGACCTTACGGCCTCAGACTGGTCGTTTCTTAAGGGTATTTAGAATTCAGGTCCTCAGATATTTAGATAGATTAGGTGTTATTTCAATTAATACTGTAATTAGGGCAGTTGATCATGTATTGTATGATGTACTTGTAAATACACTCCAGGTTTTGGAGGATCATGAAATAAAATTTAATATTTATTAA
Protein Sequence MDSRTGELITAPQAQNGVFIWEINNPLYFTITSHEIRPFNMNHDIINIQIRFNHNLRKELGIHKCFLNFKVWTTLRPQTGRFLRVFRIQVLRYLDRLGVISINTVIRAVDHVLYDVLVNTLQVLEDHEIKFNIY

NCBI Accession YP_213934.1
Location 1215-1622
Gene Name transcriptional transactivator protein
Protein Name AC2
Coding Region ATGCGACCTTCGTCACCCTCCACGAGCCATTGTTCACAAGTGCCAATCAAGGTCCAACACCGTATAGCGAAGAAGAGAACCATACGGCGTAAACGGGTTGACCTAGACTGCGGCTGCTCATATTATCTCCACATCGACTGCTCCAACCATGGATTCACGCACAGGGGAACTCATCACTGCTCCTCAGGCACAGAATGGCGTGTTTATCTGGGAGATAAACAATCCCCTCTATTTCACGATCACCAGCCACGAAATAAGGCCATTCAACATGAACCACGACATCATCAACATCCAGATAAGATTCAACCACAACCTCAGGAAGGAACTGGGGATTCACAAATGTTTTCTCAACTTCAAGGTCTGGACGACCTTACGGCCTCAGACTGGTCGTTTCTTAAGGGTATTTAG
Protein Sequence MRPSSPSTSHCSQVPIKVQHRIAKKRTIRRKRVDLDCGCSYYLHIDCSNHGFTHRGTHHCSSGTEWRVYLGDKQSPLFHDHQPRNKAIQHEPRHHQHPDKIQPQPQEGTGDSQMFSQLQGLDDLTASDWSFLKGI

NCBI Accession YP_213935.1
Location 1531-2610
Gene Name AC1
Protein Name replication-associated protein
Coding Region ATGGCTCCTCTACGTCGATTTAAAATTTGCGCAAAAAATTATTTCCTCACTTATCCAAAGTGCTCTCTCACCAAAGAGGAAACACTTTCCCAAATACAATCCCTACAAACCCCAGTAAATAAACTGTTCATCAAAATTTGCAGAGAGCTTCACGAGAATGGGGAACCTCACCTCCATGTGCTTATCCAATTCGAAGGTAAGTACCAGTGCACGAATCAGAGATTCTTCGACCTGGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTATATCGACAAGGACGGAGACACCATCGAATGGGGAGAATTTCAAATTGATGGCAGATCTGCAAGGGGAGGGCAACAATCAGCCAATGACGCTTACGCCGCAGCTCTTAACGCAGGCAGTAAGTCAGAGGCTCTTAGAGTCATTAAGGAATTAGCCCCTAAGGATTTTGTTTTACAATTTCATAATTTAAATAGTAATTTAGATAGGATTTTTCAGGAGCCTCCGGCTCCTTATGTTTCTCCTTTTTTATCTTCTTCTTTTAATCAAGTTCCGGAAGAACTTGAAGAGTGGGTGAGTGAGAACGTGATGGATGCCGCTGCGCGGCCGTGGAGACCGAATAGTATTGTAATCGAGGGTGATAGTCGTACCGGAAAGACAATGTGGGCCAGGTCATTGGGACCACATAACTATTTATGTGGCCATCTTGATCTCAGCCCAAAGGTGTACAGCAATGATGCGTGGTACAACGTCATTGATGACGTAGACCCGCATTATCTAAAGCACTTTAAGGAATTTATGGGAGCGCAGAGGGACTGGCAAAGCAACACAAAGTACGGGAAGCCAATTCAAATTAAAGGCGGAATTCCCACAATCTTCCTATGCAATCCAGGCCCAACGTCGTCCTATAAAGAATTTCTGGACGAGGAAAGGAACGCAGCACTCAAGCAGTGGGCAATTAAGAATGCGACCTTCGTCACCCTCCACGAGCCATTGTTCACAAGTGCCAATCAAGGTCCAACACCGTATAGCGAAGAAGAGAACCATACGGCGTAA
Protein Sequence MAPLRRFKICAKNYFLTYPKCSLTKEETLSQIQSLQTPVNKLFIKICRELHENGEPHLHVLIQFEGKYQCTNQRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYIDKDGDTIEWGEFQIDGRSARGGQQSANDAYAAALNAGSKSEALRVIKELAPKDFVLQFHNLNSNLDRIFQEPPAPYVSPFLSSSFNQVPEELEEWVSENVMDAAARPWRPNSIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEFLDEERNAALKQWAIKNATFVTLHEPLFTSANQGPTPYSEEENHTA

NCBI Accession YP_213936.1
Location 2151-2453
Gene Name AC4
Protein Name putative AC4 protein
Coding Region ATGGGGAACCTCACCTCCATGTGCTTATCCAATTCGAAGGTAAGTACCAGTGCACGAATCAGAGATTCTTCGACCTGGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTATATCGACAAGGACGGAGACACCATCGAATGGGGAGAATTTCAAATTGATGGCAGATCTGCAAGGGGAGGGCAACAATCAGCCAATGACGCTTACGCCGCAGCTCTTAACGCAGGCAGTAAGTCAGAGGCTCTTAGAGTCATTAAGGAATTAG
Protein Sequence MGNLTSMCLSNSKVSTSARIRDSSTWYPQPGQHISIRTFRELNPAPTSSPISTRTETPSNGENFKLMADLQGEGNNQPMTLTPQLLTQAVSQRLLESLRN