Tomato leaf curl Madagascar virus
Basic Information
Genus |
Begomovirus
|
NCBI Assembly |
GCF_000857385.1 |
Isolate |
Madagascar:Morondova,2001 |
Release date |
2015/2/13 |
Submitter |
Delatte,H., Martin,D.P., Naze,F., Goldbach,R., Reynaud,B., Peterschmitt,M., Lett,J.M. |
Host |
|
Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGCCCCCGAAAAAGAAGTGGTCCCCCCCACTATACTATGTCGTCCAATGAAATTGTGTCCTGGAAGGTTATTTATTGGGTTTTGTCCTTATATACTTGGCCGCTAAGTTTGTGGGCCTGTCACAATGTGGGATCCATTGTTAAATGAGTTCCCTGATTCTGTTCATGGTTTTCGTTGTATGCTTGCTGTAAAATATTTGCAGGCCGTTGAGGAAACGTATGAGCCCAACACTTTGGGCCACGATTTAATTCGCGATCTTATCTCTGTTATTAGGGCTCGTGACTATGTCGAAGCGACCCGGCGATATAATCATTTCCACGCCCGTCTCGAAGGTTCGTCGAAGGCTGAACTTCGACAGCCCATATACCAACCGTGTTGCTGTCCCCATTGCCCCCGCCACAAACAGGCGTCGGTCATGGACTTACCGGCCCATGTACCGAAAGCCCAGGATGTACAGAATGTACAGAAGCCCTGATGTTCCTAAGGGCTGTGAAGGCCCATGTAAGGTCCAGTCATTTGAGCAAAGGGATGATGTGAAGCATACGGGTATTGCTCGCTGTGTTAGCGATGTGACGCGTGGTTCGGGTATCACTCATAGGGTTGGTAAGAGATTTTGTATTAAGTCCATTTACATTTTAGGTAAAGTATGGATGGATGAAAATATAAAGAAGCAGAATCACACGAACAACGTGATGTTCTTCTTGGTCCGAGATCGCAGGCCCAGTGGATCAGCGCCCATGGACTTTGGGCAGGTGTTTAACATGTTTGACAATGAGCCCAGTACTGCGACTGTGAAGAATGATTTGCGAGATAGGTTACAGGTTTTGCGCAAGTTTCATGCTACCGTTGTTGGTGGTCCTTCTGGGATGAAGGAACAGGCTTTAGTTAAGAGATTTTATAGGATTAATAATCATGTAGTTTATAATCACCAGGAGGCAGCGAAGTATGAAAATCATACTGAGAATGCGTTGTTGTTGTATATGGCTTGTACTCATTATTCCAATCCCGTGTACGCTACATTGAAAATACGCATCTATTTCTATGATGCAGTGACAAATTAATAAATATTAAATTTTATTTCATGATCCTCCAAAACCTGGAGTGTATTTACAAGTACATCATACAATACATGATCAACTGCCCTAATTACAGTATTAATTGAAATAACACCTAATCTATCTAAATATCTGAGGACCTGAATTCTAAATACCCTTAAGAAACGACCAGTCTGAGGCCGTAAGGTCGTCCAGACCTTGAAGTTGAGAAAACATTTGTGAATCCCCAGTTCCTTCCTGAGGTTGTGGTTGAATCTTATCTGGATGTTGATGATGTCGTGGTTCATGTTGAATGGCCTTATTTCGTGGCTGGTGATCGTGAAATAGAGGGGATTGTTTATCTCCCAGATAAACACGCCATTCTGTGCCTGAGGAGCAGTGATGAGTTCCCCTGTGCGTGAATCCATGGTTGGAGCAGTCGATGTGGAGATAATATGAGCAGCCGCAGTCTAGGTCAACCCGTTTACGCCGTATGGTTCTCTTCTTCGCTATACGGTGTTGGACCTTGATTGGCACTTGTGAACAATGGCTCGTGGAGGGTGACGAAGGTCGCATTCTTAATTGCCCACTGCTTGAGTGCTGCGTTCCTTTCCTCGTCCAGAAATTCTTTATAGGACGACGTTGGGCCTGGATTGCATAGGAAGATTGTGGGAATTCCGCCTTTAATTTGAATTGGCTTCCCGTACTTTGTGTTGCTTTGCCAGTCCCTCTGCGCTCCCATAAATTCCTTAAAGTGCTTTAGATAATGCGGGTCTACGTCATCAATGACGTTGTACCACGCATCATTGCTGTACACCTTTGGGCTGAGATCAAGATGGCCACATAAATAGTTATGTGGTCCCAATGACCTGGCCCACATTGTCTTTCCGGTACGACTATCACCCTCGATTACAATACTATTCGGTCTCCACGGCCGCGCAGCGGCATCCATCACGTTCTCACTCACCCACTCTTCAAGTTCTTCCGGAACTTGATTAAAAGAAGAAGATAAAAAAGGAGAAACATAAGGAGCCGGAGGCTCCTGAAAAATCCTATCTAAATTACTATTTAAATTATGAAATTGTAAAACAAAATCCTTAGGGGCTAATTCCTTAATGACTCTAAGAGCCTCTGACTTACTGCCTGCGTTAAGAGCTGCGGCGTAAGCGTCATTGGCTGATTGTTGCCCTCCCCTTGCAGATCTGCCATCAATTTGAAATTCTCCCCATTCGATGGTGTCTCCGTCCTTGTCGATATAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGATACCAGGTCGAAGAATCTCTGATTCGTGCACTGGTACTTACCTTCGAATTGGATAAGCACATGGAGGTGAGGTTCCCCATTCTCGTGAAGCTCTCTGCAAATTTTGATGAACAGTTTATTTACTGGGGTTTGTAGGGATTGTATTTGGGAAAGTGTTTCCTCTTTGGTGAGAGAGCACTTTGGATAAGTGAGGAAATAATTTTTTGCGCAAATTTTAAATCGACGTAGAGGAGCCATTTAGTCAATGTACTCCGATTGACCACTAATTCATTTGCTGTCTGCAATCGGAGTATTGGTGGCCAATATATAGGTGTACTCCAAATGGCATTATGGTAAATAGCTAAAGTTTTTTAATTTTGAAATTCAAAATTTGAAATTCTAAAAGCGGCCATCCGTATAATATT
Gene Information
NCBI Accession
|
YP_213931.1
|
Location
|
137-487 |
Gene Name
|
AV2 |
Protein Name
|
putative AV2 protein |
Coding Region
|
ATGTGGGATCCATTGTTAAATGAGTTCCCTGATTCTGTTCATGGTTTTCGTTGTATGCTTGCTGTAAAATATTTGCAGGCCGTTGAGGAAACGTATGAGCCCAACACTTTGGGCCACGATTTAATTCGCGATCTTATCTCTGTTATTAGGGCTCGTGACTATGTCGAAGCGACCCGGCGATATAATCATTTCCACGCCCGTCTCGAAGGTTCGTCGAAGGCTGAACTTCGACAGCCCATATACCAACCGTGTTGCTGTCCCCATTGCCCCCGCCACAAACAGGCGTCGGTCATGGACTTACCGGCCCATGTACCGAAAGCCCAGGATGTACAGAATGTACAGAAGCCCTGA |
Protein Sequence
|
MWDPLLNEFPDSVHGFRCMLAVKYLQAVEETYEPNTLGHDLIRDLISVIRARDYVEATRRYNHFHARLEGSSKAELRQPIYQPCCCPHCPRHKQASVMDLPAHVPKAQDVQNVQKP |
NCBI Accession
|
YP_213932.1
|
Location
|
297-1073 |
Gene Name
|
AV1 |
Protein Name
|
coat protein |
Coding Region
|
ATGTCGAAGCGACCCGGCGATATAATCATTTCCACGCCCGTCTCGAAGGTTCGTCGAAGGCTGAACTTCGACAGCCCATATACCAACCGTGTTGCTGTCCCCATTGCCCCCGCCACAAACAGGCGTCGGTCATGGACTTACCGGCCCATGTACCGAAAGCCCAGGATGTACAGAATGTACAGAAGCCCTGATGTTCCTAAGGGCTGTGAAGGCCCATGTAAGGTCCAGTCATTTGAGCAAAGGGATGATGTGAAGCATACGGGTATTGCTCGCTGTGTTAGCGATGTGACGCGTGGTTCGGGTATCACTCATAGGGTTGGTAAGAGATTTTGTATTAAGTCCATTTACATTTTAGGTAAAGTATGGATGGATGAAAATATAAAGAAGCAGAATCACACGAACAACGTGATGTTCTTCTTGGTCCGAGATCGCAGGCCCAGTGGATCAGCGCCCATGGACTTTGGGCAGGTGTTTAACATGTTTGACAATGAGCCCAGTACTGCGACTGTGAAGAATGATTTGCGAGATAGGTTACAGGTTTTGCGCAAGTTTCATGCTACCGTTGTTGGTGGTCCTTCTGGGATGAAGGAACAGGCTTTAGTTAAGAGATTTTATAGGATTAATAATCATGTAGTTTATAATCACCAGGAGGCAGCGAAGTATGAAAATCATACTGAGAATGCGTTGTTGTTGTATATGGCTTGTACTCATTATTCCAATCCCGTGTACGCTACATTGAAAATACGCATCTATTTCTATGATGCAGTGACAAATTAA |
Protein Sequence
|
MSKRPGDIIISTPVSKVRRRLNFDSPYTNRVAVPIAPATNRRRSWTYRPMYRKPRMYRMYRSPDVPKGCEGPCKVQSFEQRDDVKHTGIARCVSDVTRGSGITHRVGKRFCIKSIYILGKVWMDENIKKQNHTNNVMFFLVRDRRPSGSAPMDFGQVFNMFDNEPSTATVKNDLRDRLQVLRKFHATVVGGPSGMKEQALVKRFYRINNHVVYNHQEAAKYENHTENALLLYMACTHYSNPVYATLKIRIYFYDAVTN |
NCBI Accession
|
YP_213933.1
|
Location
|
1070-1474 |
Gene Name
|
AC3 |
Protein Name
|
replication enhancer protein |
Coding Region
|
ATGGATTCACGCACAGGGGAACTCATCACTGCTCCTCAGGCACAGAATGGCGTGTTTATCTGGGAGATAAACAATCCCCTCTATTTCACGATCACCAGCCACGAAATAAGGCCATTCAACATGAACCACGACATCATCAACATCCAGATAAGATTCAACCACAACCTCAGGAAGGAACTGGGGATTCACAAATGTTTTCTCAACTTCAAGGTCTGGACGACCTTACGGCCTCAGACTGGTCGTTTCTTAAGGGTATTTAGAATTCAGGTCCTCAGATATTTAGATAGATTAGGTGTTATTTCAATTAATACTGTAATTAGGGCAGTTGATCATGTATTGTATGATGTACTTGTAAATACACTCCAGGTTTTGGAGGATCATGAAATAAAATTTAATATTTATTAA |
Protein Sequence
|
MDSRTGELITAPQAQNGVFIWEINNPLYFTITSHEIRPFNMNHDIINIQIRFNHNLRKELGIHKCFLNFKVWTTLRPQTGRFLRVFRIQVLRYLDRLGVISINTVIRAVDHVLYDVLVNTLQVLEDHEIKFNIY |
NCBI Accession
|
YP_213934.1
|
Location
|
1215-1622 |
Gene Name
|
transcriptional transactivator protein |
Protein Name
|
AC2 |
Coding Region
|
ATGCGACCTTCGTCACCCTCCACGAGCCATTGTTCACAAGTGCCAATCAAGGTCCAACACCGTATAGCGAAGAAGAGAACCATACGGCGTAAACGGGTTGACCTAGACTGCGGCTGCTCATATTATCTCCACATCGACTGCTCCAACCATGGATTCACGCACAGGGGAACTCATCACTGCTCCTCAGGCACAGAATGGCGTGTTTATCTGGGAGATAAACAATCCCCTCTATTTCACGATCACCAGCCACGAAATAAGGCCATTCAACATGAACCACGACATCATCAACATCCAGATAAGATTCAACCACAACCTCAGGAAGGAACTGGGGATTCACAAATGTTTTCTCAACTTCAAGGTCTGGACGACCTTACGGCCTCAGACTGGTCGTTTCTTAAGGGTATTTAG |
Protein Sequence
|
MRPSSPSTSHCSQVPIKVQHRIAKKRTIRRKRVDLDCGCSYYLHIDCSNHGFTHRGTHHCSSGTEWRVYLGDKQSPLFHDHQPRNKAIQHEPRHHQHPDKIQPQPQEGTGDSQMFSQLQGLDDLTASDWSFLKGI |
NCBI Accession
|
YP_213935.1
|
Location
|
1531-2610 |
Gene Name
|
AC1 |
Protein Name
|
replication-associated protein |
Coding Region
|
ATGGCTCCTCTACGTCGATTTAAAATTTGCGCAAAAAATTATTTCCTCACTTATCCAAAGTGCTCTCTCACCAAAGAGGAAACACTTTCCCAAATACAATCCCTACAAACCCCAGTAAATAAACTGTTCATCAAAATTTGCAGAGAGCTTCACGAGAATGGGGAACCTCACCTCCATGTGCTTATCCAATTCGAAGGTAAGTACCAGTGCACGAATCAGAGATTCTTCGACCTGGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTATATCGACAAGGACGGAGACACCATCGAATGGGGAGAATTTCAAATTGATGGCAGATCTGCAAGGGGAGGGCAACAATCAGCCAATGACGCTTACGCCGCAGCTCTTAACGCAGGCAGTAAGTCAGAGGCTCTTAGAGTCATTAAGGAATTAGCCCCTAAGGATTTTGTTTTACAATTTCATAATTTAAATAGTAATTTAGATAGGATTTTTCAGGAGCCTCCGGCTCCTTATGTTTCTCCTTTTTTATCTTCTTCTTTTAATCAAGTTCCGGAAGAACTTGAAGAGTGGGTGAGTGAGAACGTGATGGATGCCGCTGCGCGGCCGTGGAGACCGAATAGTATTGTAATCGAGGGTGATAGTCGTACCGGAAAGACAATGTGGGCCAGGTCATTGGGACCACATAACTATTTATGTGGCCATCTTGATCTCAGCCCAAAGGTGTACAGCAATGATGCGTGGTACAACGTCATTGATGACGTAGACCCGCATTATCTAAAGCACTTTAAGGAATTTATGGGAGCGCAGAGGGACTGGCAAAGCAACACAAAGTACGGGAAGCCAATTCAAATTAAAGGCGGAATTCCCACAATCTTCCTATGCAATCCAGGCCCAACGTCGTCCTATAAAGAATTTCTGGACGAGGAAAGGAACGCAGCACTCAAGCAGTGGGCAATTAAGAATGCGACCTTCGTCACCCTCCACGAGCCATTGTTCACAAGTGCCAATCAAGGTCCAACACCGTATAGCGAAGAAGAGAACCATACGGCGTAA |
Protein Sequence
|
MAPLRRFKICAKNYFLTYPKCSLTKEETLSQIQSLQTPVNKLFIKICRELHENGEPHLHVLIQFEGKYQCTNQRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYIDKDGDTIEWGEFQIDGRSARGGQQSANDAYAAALNAGSKSEALRVIKELAPKDFVLQFHNLNSNLDRIFQEPPAPYVSPFLSSSFNQVPEELEEWVSENVMDAAARPWRPNSIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEFLDEERNAALKQWAIKNATFVTLHEPLFTSANQGPTPYSEEENHTA |
NCBI Accession
|
YP_213936.1
|
Location
|
2151-2453 |
Gene Name
|
AC4 |
Protein Name
|
putative AC4 protein |
Coding Region
|
ATGGGGAACCTCACCTCCATGTGCTTATCCAATTCGAAGGTAAGTACCAGTGCACGAATCAGAGATTCTTCGACCTGGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTATATCGACAAGGACGGAGACACCATCGAATGGGGAGAATTTCAAATTGATGGCAGATCTGCAAGGGGAGGGCAACAATCAGCCAATGACGCTTACGCCGCAGCTCTTAACGCAGGCAGTAAGTCAGAGGCTCTTAGAGTCATTAAGGAATTAG |
Protein Sequence
|
MGNLTSMCLSNSKVSTSARIRDSSTWYPQPGQHISIRTFRELNPAPTSSPISTRTETPSNGENFKLMADLQGEGNNQPMTLTPQLLTQAVSQRLLESLRN |