Tomato leaf curl Liwa virus


Basic Information

Genus Begomovirus
NCBI Assembly GCF_000915295.1
Isolate Oman:Liwa
Release date 2015/2/22
Submitter Khan,A.J., Akhtar,S., Singh,A.K., Al-Shehi,A.A., Al-Matrushi,A.M., Ammara,U., Briddon,R.W.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_023312
ACCGGATGGCCGCGATTTTTTTTACCGTGGACCCCGCGATGCACGTGCTGACAAATACATGTGGACCAATTAAAAACGTCCCTCAAAGCTTAATTGTTTCGTGGTCCCCTCTATAAACTTGGGCTCCAAGTAGTGGGCTTTTATCACAATGTGGGATCCTTTACTAAATGAGTTTCCCGAAAGTGTTCATGGGTTTAGGTGTATGTTAGCAGTGAAATATCTGCAATTAGTAGAAAATTCATATTCGCCAGACACATTAGGGTACGATTTAATCAGGGATTTAATCTCAGTTATTAGGGCTAGAAATTATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCCTCGAAGGTACGCCGTCGTCTCAACTTCGACAGCCCATATGCCAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACAAAGGCAAAGGCATGGGCCAACAGGCCCATGAATCGGAAGCCCAGGATGTACAGAATGTACAGAAGCCCTGATGTTCCGAGGGGATGTGAAGGCCCATGTAAAGTCCAGTCTTATGAGCAACGGGATGATATTAAGCATACTGGTATTGTTCGTTGTGTTAGTGATGTTACTCGTGGATCCGGAATTACCCACAGAGTGGGTAAGAGGTTCTGTGTTAAATCCATATATTTTTTAGGTAAAGTTTGGATGGATGAAAATATCAAGAAGCAGAATCACACTAATCAGGTCATGTTCTTCTTGGTCCGTGATAGAAGGCCCTATGGAAGCAGCCCAATGGATTTTGGGCAGGTTTTTAATATGTTCGACAACGAACCTAGCACCGCAACCGTGAAGAATGATCTCCGGGATAGGTTTCAAGTGATGAGGAAATTTCATGCTACAGTTATCGGTGGGCCCTCTGGAATGAAGGAACAGGCATTAGTTAAGAGATTTTTTAGAATTAACAGTCATGTAACTTATAATCATCAGGAGGCAGCCAAGTATGAGAATCATACTGAGAATGCTTTGTTGTTGTATATGGCATGTACTCATGCCTCTAACCCTGTGTATGCTACATTGAAGATACGTATCTATTTCTATGATTCAGTATCGAATTAATAAAGATTATATTTTATTGAATATGATTGGTTTACATATACAACGTGATCTAATACATTCCATAATACATGATCAACTGCTCTATTTACATTGTTAATACTAATTACAGCAAAATTATTAAGCACTTTGAATACTTGGGTTTTAAATACCCTTAAGAAATGACCAGTCTGAGGCTGTAAGGTCGTCCAGATTCGGTAGGTTAGAAAACATTTGTGCATCCCCAACGCTTTCCTCAGGTTGTGATTGAACCGTATCTGCACTGTGATGATGTCTTGGCTTCTCAGGAATGGCCTGTTGTGGTGCTCTGTTATCTTGAAATACAGGGGATTTGTTATCTCCCAGATAAACACGCCATTCTCTGCTTGAGCTGCAGTGATGGGTTCCCCTGTGCGTGAATCCATAGCCATGGCAACGTAATGCGATGAAATATGAACAGCCGCAATCGAGGTCAACGCGACGACGCCTGGTCCCCTTCTTGGCCAACCTGTGCTGCACTTTGATTGGAACCTGAGTAGAGTGGGCCTGTGAGGGTGATGAAGGTCGCATTCTTTAAAGCCCAATGTTTGAGTGCGGAATTCTTTTCTTCATCCAAGAACTCTTTATAGCTGGAATTGGGTCCTGGATTGCAGAGGAAGATAGCGGGAATTCCACCTTTAATTTGAACTGGCTTTCCGTATTTTGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGTTTTAGATAATGCGGGTCGACGTCATCAATGACGTTATACGAGGCATCATTGCTGTACACTTTAGGGCTAAGGTCTAAGTGACCACATAGGTAGTTATGTGGACCCAACGACCTAGCCCACATGGTCTTCCCGGTTCGACTATCACCCTCAATCACAATACTCATGGGCCTCAAAGGCCGCGCAGCGGCACCCACCACGTTCACAGAAGCCCATTCCTCAAGTTCATCAGGAACTTGATTAAAAGATGAAGACAAAAAGGGAGAAACATAAACCTCCACAGGAGGTGTAAAAATCCTATCTAAATTACATTTTAAATTATGATATTGAAAAATAAAATCTTTTGGGAGTTTTTCCCTTATTATTGATAAAGCCTCTTCAGCCGAACCTGCATTTAGGGCCTCTGCTGCTGCATCATTAGCTGTCTGTTGACCTCCTCGAGCAGATCTTCCATCGATCTGAAACTGACCCCAGTCGATGTAATCACCGTCCTTCTCGATGTAGGACTTGACATCGGAGCTGGACTTTGCTCCCTGGAAGTTTGGGTGGAATTGGGAGGAGTTATTAGGGTGAGTGACATCGAAATGTCTGGGGTTTCTGAACTTGGCTTTACCTTTGAACTGGATGAGGGCGTGGATATGCAGAGACCCATCTTGGGTGTTTTTCTTGTGACACTCTGATAAATAATTTATCAGATAGGGCAATTTATTGACTGGAAGAATTTCGAGCATGTGCTCTTTGGGTATGTGGCATTTTGGATAAGTGAGGAAAATATTTTTGGCATTTACACAAAAAGAGTTAATACGAGGCATATTGAATTGGGGACACTCAAAACTCTGAGGAATGGGGGACTCTGGGGACGCATTTATATGAAGTCCCCAAATGGCATTTTCGTAATTACGAAAGAAAATTCAAAATACTAACGCTCCAAAAAGCGGCCATCCGTATAATATT

Gene Information

NCBI Accession YP_008997810.1
Location 149-496
Gene Name V2
Protein Name Pre-coat protein
Coding Region ATGTGGGATCCTTTACTAAATGAGTTTCCCGAAAGTGTTCATGGGTTTAGGTGTATGTTAGCAGTGAAATATCTGCAATTAGTAGAAAATTCATATTCGCCAGACACATTAGGGTACGATTTAATCAGGGATTTAATCTCAGTTATTAGGGCTAGAAATTATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCCTCGAAGGTACGCCGTCGTCTCAACTTCGACAGCCCATATGCCAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACAAAGGCAAAGGCATGGGCCAACAGGCCCATGAATCGGAAGCCCAGGATGTACAGAATGTACAGAAGCCCTGA
Protein Sequence MWDPLLNEFPESVHGFRCMLAVKYLQLVENSYSPDTLGYDLIRDLISVIRARNYVEATSRYNHFHARLEGTPSSQLRQPICQPCCCPHCPRHKGKGMGQQAHESEAQDVQNVQKP

NCBI Accession YP_008997811.1
Location 309-1082
Gene Name V1
Protein Name Coat protein (CP)
Coding Region ATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCCTCGAAGGTACGCCGTCGTCTCAACTTCGACAGCCCATATGCCAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACAAAGGCAAAGGCATGGGCCAACAGGCCCATGAATCGGAAGCCCAGGATGTACAGAATGTACAGAAGCCCTGATGTTCCGAGGGGATGTGAAGGCCCATGTAAAGTCCAGTCTTATGAGCAACGGGATGATATTAAGCATACTGGTATTGTTCGTTGTGTTAGTGATGTTACTCGTGGATCCGGAATTACCCACAGAGTGGGTAAGAGGTTCTGTGTTAAATCCATATATTTTTTAGGTAAAGTTTGGATGGATGAAAATATCAAGAAGCAGAATCACACTAATCAGGTCATGTTCTTCTTGGTCCGTGATAGAAGGCCCTATGGAAGCAGCCCAATGGATTTTGGGCAGGTTTTTAATATGTTCGACAACGAACCTAGCACCGCAACCGTGAAGAATGATCTCCGGGATAGGTTTCAAGTGATGAGGAAATTTCATGCTACAGTTATCGGTGGGCCCTCTGGAATGAAGGAACAGGCATTAGTTAAGAGATTTTTTAGAATTAACAGTCATGTAACTTATAATCATCAGGAGGCAGCCAAGTATGAGAATCATACTGAGAATGCTTTGTTGTTGTATATGGCATGTACTCATGCCTCTAACCCTGTGTATGCTACATTGAAGATACGTATCTATTTCTATGATTCAGTATCGAATTAA
Protein Sequence MSKRPADIIISTPASKVRRRLNFDSPYASRAAAPIVRVTKAKAWANRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSYEQRDDIKHTGIVRCVSDVTRGSGITHRVGKRFCVKSIYFLGKVWMDENIKKQNHTNQVMFFLVRDRRPYGSSPMDFGQVFNMFDNEPSTATVKNDLRDRFQVMRKFHATVIGGPSGMKEQALVKRFFRINSHVTYNHQEAAKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSVSN

NCBI Accession YP_008997812.1
Location 1079-1489
Gene Name C3
Protein Name replication enhancer protein (REn)
Coding Region ATGGCTATGGATTCACGCACAGGGGAACCCATCACTGCAGCTCAAGCAGAGAATGGCGTGTTTATCTGGGAGATAACAAATCCCCTGTATTTCAAGATAACAGAGCACCACAACAGGCCATTCCTGAGAAGCCAAGACATCATCACAGTGCAGATACGGTTCAATCACAACCTGAGGAAAGCGTTGGGGATGCACAAATGTTTTCTAACCTACCGAATCTGGACGACCTTACAGCCTCAGACTGGTCATTTCTTAAGGGTATTTAAAACCCAAGTATTCAAAGTGCTTAATAATTTTGCTGTAATTAGTATTAACAATGTAAATAGAGCAGTTGATCATGTATTATGGAATGTATTAGATCACGTTGTATATGTAAACCAATCATATTCAATAAAATATAATCTTTATTAA
Protein Sequence MAMDSRTGEPITAAQAENGVFIWEITNPLYFKITEHHNRPFLRSQDIITVQIRFNHNLRKALGMHKCFLTYRIWTTLQPQTGHFLRVFKTQVFKVLNNFAVISINNVNRAVDHVLWNVLDHVVYVNQSYSIKYNLY

NCBI Accession YP_008997813.1
Location 1224-1628
Gene Name C2
Protein Name transcription activation protein (TrAP)
Coding Region ATGCGACCTTCATCACCCTCACAGGCCCACTCTACTCAGGTTCCAATCAAAGTGCAGCACAGGTTGGCCAAGAAGGGGACCAGGCGTCGTCGCGTTGACCTCGATTGCGGCTGTTCATATTTCATCGCATTACGTTGCCATGGCTATGGATTCACGCACAGGGGAACCCATCACTGCAGCTCAAGCAGAGAATGGCGTGTTTATCTGGGAGATAACAAATCCCCTGTATTTCAAGATAACAGAGCACCACAACAGGCCATTCCTGAGAAGCCAAGACATCATCACAGTGCAGATACGGTTCAATCACAACCTGAGGAAAGCGTTGGGGATGCACAAATGTTTTCTAACCTACCGAATCTGGACGACCTTACAGCCTCAGACTGGTCATTTCTTAAGGGTATTTAA
Protein Sequence MRPSSPSQAHSTQVPIKVQHRLAKKGTRRRRVDLDCGCSYFIALRCHGYGFTHRGTHHCSSSREWRVYLGDNKSPVFQDNRAPQQAIPEKPRHHHSADTVQSQPEESVGDAQMFSNLPNLDDLTASDWSFLKGI

NCBI Accession YP_008997814.1
Location 1531-2619
Gene Name C1
Protein Name replication initiation protein (Rep)
Coding Region ATGCCTCGTATTAACTCTTTTTGTGTAAATGCCAAAAATATTTTCCTCACTTATCCAAAATGCCACATACCCAAAGAGCACATGCTCGAAATTCTTCCAGTCAATAAATTGCCCTATCTGATAAATTATTTATCAGAGTGTCACAAGAAAAACACCCAAGATGGGTCTCTGCATATCCACGCCCTCATCCAGTTCAAAGGTAAAGCCAAGTTCAGAAACCCCAGACATTTCGATGTCACTCACCCTAATAACTCCTCCCAATTCCACCCAAACTTCCAGGGAGCAAAGTCCAGCTCCGATGTCAAGTCCTACATCGAGAAGGACGGTGATTACATCGACTGGGGTCAGTTTCAGATCGATGGAAGATCTGCTCGAGGAGGTCAACAGACAGCTAATGATGCAGCAGCAGAGGCCCTAAATGCAGGTTCGGCTGAAGAGGCTTTATCAATAATAAGGGAAAAACTCCCAAAAGATTTTATTTTTCAATATCATAATTTAAAATGTAATTTAGATAGGATTTTTACACCTCCTGTGGAGGTTTATGTTTCTCCCTTTTTGTCTTCATCTTTTAATCAAGTTCCTGATGAACTTGAGGAATGGGCTTCTGTGAACGTGGTGGGTGCCGCTGCGCGGCCTTTGAGGCCCATGAGTATTGTGATTGAGGGTGATAGTCGAACCGGGAAGACCATGTGGGCTAGGTCGTTGGGTCCACATAACTACCTATGTGGTCACTTAGACCTTAGCCCTAAAGTGTACAGCAATGATGCCTCGTATAACGTCATTGATGACGTCGACCCGCATTATCTAAAACACTTTAAAGAATTCATGGGGGCCCAAAGGGACTGGCAATCAAATACAAAATACGGAAAGCCAGTTCAAATTAAAGGTGGAATTCCCGCTATCTTCCTCTGCAATCCAGGACCCAATTCCAGCTATAAAGAGTTCTTGGATGAAGAAAAGAATTCCGCACTCAAACATTGGGCTTTAAAGAATGCGACCTTCATCACCCTCACAGGCCCACTCTACTCAGGTTCCAATCAAAGTGCAGCACAGGTTGGCCAAGAAGGGGACCAGGCGTCGTCGCGTTGA
Protein Sequence MPRINSFCVNAKNIFLTYPKCHIPKEHMLEILPVNKLPYLINYLSECHKKNTQDGSLHIHALIQFKGKAKFRNPRHFDVTHPNNSSQFHPNFQGAKSSSDVKSYIEKDGDYIDWGQFQIDGRSARGGQQTANDAAAEALNAGSAEEALSIIREKLPKDFIFQYHNLKCNLDRIFTPPVEVYVSPFLSSSFNQVPDELEEWASVNVVGAAARPLRPMSIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDASYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPAIFLCNPGPNSSYKEFLDEEKNSALKHWALKNATFITLTGPLYSGSNQSAAQVGQEGDQASSR

NCBI Accession YP_008997815.1
Location 2202-2459
Gene Name C4
Protein Name C4 protein
Coding Region ATGGGTCTCTGCATATCCACGCCCTCATCCAGTTCAAAGGTAAAGCCAAGTTCAGAAACCCCAGACATTTCGATGTCACTCACCCTAATAACTCCTCCCAATTCCACCCAAACTTCCAGGGAGCAAAGTCCAGCTCCGATGTCAAGTCCTACATCGAGAAGGACGGTGATTACATCGACTGGGGTCAGTTTCAGATCGATGGAAGATCTGCTCGAGGAGGTCAACAGACAGCTAATGATGCAGCAGCAGAGGCCCTAA
Protein Sequence MGLCISTPSSSSKVKPSSETPDISMSLTLITPPNSTQTSREQSPAPMSSPTSRRTVITSTGVSFRSMEDLLEEVNRQLMMQQQRP