Tomato leaf curl Laos virus
Basic Information
| Genus |
Begomovirus
|
| NCBI Assembly |
GCF_000842065.1 |
| Isolate |
Laos |
| Release date |
2015/2/12 |
| Submitter |
Tsai,W.S., Nakhla,M.K., Maxwell,D.P., Green,S.K., Black,L.L. |
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGATTTTTTTAAAAGTGGGCCCCCCCACTAAAATATGTCCCCCACTCAGAACGCGCCCTCAGAGCCTATTTAGTGTGTGGTCCCCTATTTATATCTTGGTGACCAAGTTTCATTTCAAACATGTGGGACCCACTTTTGAACGAGTTCCCTGAGACTGTTCATGGTCTACGGTGTATGCTAGCCAAAAAATACGTACAGGAAGTTCAGAAGACGTATTCTCCGGATACGGTTGGGTACGATTTATTTTGTGATTTAATACATCTCTTAAACACTAAAAATTATGAGCAAGCGTCCAGCAGATATAGTCATTTCTACTCCCGCCTCCAAGGTACGCCGCCGTCTGAACTTCGACACCCCTTATACCAGTCGTGCTGCTGTCCCCACTGTCCTCGTCACAAACAAAAGACGAGCATGGATTCAGAGGCCCATGTATCGGAAACCCAGAATGTACAGAATGTACAGAAGCCCTGATGTGCCCAAGGGTTGTGAAGGCCCGTGTAAGGTCCAGTCATATGAGCAGAGACATGATGTATCCCATGTGGGTAAAGTGTTGTGTGTTAGTGATGTCACTCGTGGAAATGGGCTTACCCATCGTGTGGGTAAGAGATTCTGTGTGAAGTCCGTTTATGTGTTGGGCAAAATTTGGATGGATGAGAATATCAAGACTAAGAACCATACCAACACTGTAATGTTCTTTCTGGTCCGCGATAGAAGGCCCTTCGGTACTGCTATGGATTTTGGTCAGGTTTTTAACATGTATGATAACGAGCCCAGTACTGCCACTGTGAAGAATGATATGAGAGATCGTTACCAGGTGCTAAGGAAGTTTACTGCAACTGTGACTGGTGGCCAGTATGCCTCTAAGGAGCAGGCGTTAGTTAGGAAGTTCATGAAAATTAATAACTATGTTGTGTATAATCATCAGGAGGCTGCTAAGTATGAAAATCATACTGAGAATGCCCTTTTATTGTATATGGCATGTACTCATGCCAGTAACCCAGTGTATGCAACATTGAAGATCAGAATCTATTTCTATGATTCTGTTCAGAATTAATAAATATTGAATTTTATTATATATGAAAATTGAGCATCAATTGTGCCTTCGAATACATTGTACAATACATGATTGATTGCCCTAATTACATTGTTAATGCTAATAACTCCTAATCTATCTAAATACTTCATACATTGGTATTTAAATACTCTTAAGAAATGCCCAGTCCGAGGATGTAAACGAGTCCAGATTTGGCAGATTGGAAAACATTGGTGTATCCCCAACGCTTTCCTCAGGTTGTGGTTGAACTGTATTTGGACTGTTATTATGTCGTGTTCCCGGAAGAATGGTCTCTCGATGTGCTTGGTTATCTTGAAATAGAGGGGATTTGGGACCGTCCAGATATACGCGCCACTCTCTGCTTGAGTTGCAGTGATGGGTTCCCCGGTGCGTGAATCCATGGTTGTGACAGTTGATGCTAATGAAGTATGAGCATCCACAGGGAAGATCAACTCTACGTCTGCGAATTGGCCTCTTCTTGGCTATTCTGTGCTTGACTTTGATGGGTACCTGAGTACAGTGGCTCCGTGAGGGTGATGAATTCTGCATTCTTTACTGCCCAGTCTTTTAATGCTGAATTCTTTTCCTCGTCCAAGTACTCTTTATACGATGATGTTGGGCCTGGATTGCAGAGGAAGATTGTTGGGATCCCACCTTTAATTTGCATGGGCTTCCCGTACTTTGTGTTGCTTTGCCAATCTCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGATAGTGGGGGTCTACGTCATCAATGACGTTGTACCATGCATCATTACTGTACACCTTTGGACTCAAGTCAAGGTGCCCACACAAATAATTATGTGGGCCTAAAGACCTGGCCCACATTGTCTTTCCTGTTCTGCTCTCTCCCTCGATGACTATACTTTTGGGCCTCCAAGGCCGCGCAGCGGCATCCCTTACATTCTCGGACACCCACTCTTCAAGTTCTTCTGGAACTTGATCAAAAGAAGAAGAAAGAAAAGGACAAACAAAAACCTCTAAAGGAGGTGCAAAAATCCTATCTAAATTAGAATTTAAATTATGAAATTGTAAAACATAATCTTTGGGGGCTAATTCTTTAATTACATTAAGAGCCTCTGACTTACTTCCGCTGTTAAGTGCTTTGGCGTAAGCGTCATTGGCTGTCTGTTGTCCTCCCCTTGCAGATCTTCCATCGATCTGAAACTCGCCCCAGTCGAGGGTGTCTCCGTCCTTCTCCAGATAGGACTTAACGTCTGAGCTTGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGACACCAGGTCGAAGAATCTGTTATTCGTGCAGTTGTATTTCCCTTCGAACTGGATAAGCACGTGGAGATGAGGAGACCCATCTTCGTGAAGCTCTCTGCAAATTTTGATATATTTTTTATTTGTTGGGGTTTGTAGGGTTTGTAATTGGGAAAGTGCTTCTTCCTTTGTGAGTGAGCACTGGGGATATGTAAGAAAATAATTTTTGGCTTTAATAGAAAAACGTCCGGCTCTAGGCATTTTGGAATTGGGGGGCACTCTAATTCTCTGCAATCGGGGGAACGGGGGGGCAATTTATATGTGCCCCCCAAATGGCATTCTCGTAATTCCCAAAAGAAATTCAAATTCAAATTCAAATTCCTAAAGCGGCCATCCGTATAATATT
Gene Information
|
NCBI Accession
|
NP_803239.1
|
|
Location
|
133-483 |
|
Gene Name
|
V2 |
|
Protein Name
|
pre-coat protein |
|
Coding Region
|
ATGTGGGACCCACTTTTGAACGAGTTCCCTGAGACTGTTCATGGTCTACGGTGTATGCTAGCCAAAAAATACGTACAGGAAGTTCAGAAGACGTATTCTCCGGATACGGTTGGGTACGATTTATTTTGTGATTTAATACATCTCTTAAACACTAAAAATTATGAGCAAGCGTCCAGCAGATATAGTCATTTCTACTCCCGCCTCCAAGGTACGCCGCCGTCTGAACTTCGACACCCCTTATACCAGTCGTGCTGCTGTCCCCACTGTCCTCGTCACAAACAAAAGACGAGCATGGATTCAGAGGCCCATGTATCGGAAACCCAGAATGTACAGAATGTACAGAAGCCCTGA |
|
Protein Sequence
|
MWDPLLNEFPETVHGLRCMLAKKYVQEVQKTYSPDTVGYDLFCDLIHLLNTKNYEQASSRYSHFYSRLQGTPPSELRHPLYQSCCCPHCPRHKQKTSMDSEAHVSETQNVQNVQKP |
|
NCBI Accession
|
NP_803240.1
|
|
Location
|
293-1066 |
|
Gene Name
|
V1 |
|
Protein Name
|
coat protein |
|
Coding Region
|
ATGAGCAAGCGTCCAGCAGATATAGTCATTTCTACTCCCGCCTCCAAGGTACGCCGCCGTCTGAACTTCGACACCCCTTATACCAGTCGTGCTGCTGTCCCCACTGTCCTCGTCACAAACAAAAGACGAGCATGGATTCAGAGGCCCATGTATCGGAAACCCAGAATGTACAGAATGTACAGAAGCCCTGATGTGCCCAAGGGTTGTGAAGGCCCGTGTAAGGTCCAGTCATATGAGCAGAGACATGATGTATCCCATGTGGGTAAAGTGTTGTGTGTTAGTGATGTCACTCGTGGAAATGGGCTTACCCATCGTGTGGGTAAGAGATTCTGTGTGAAGTCCGTTTATGTGTTGGGCAAAATTTGGATGGATGAGAATATCAAGACTAAGAACCATACCAACACTGTAATGTTCTTTCTGGTCCGCGATAGAAGGCCCTTCGGTACTGCTATGGATTTTGGTCAGGTTTTTAACATGTATGATAACGAGCCCAGTACTGCCACTGTGAAGAATGATATGAGAGATCGTTACCAGGTGCTAAGGAAGTTTACTGCAACTGTGACTGGTGGCCAGTATGCCTCTAAGGAGCAGGCGTTAGTTAGGAAGTTCATGAAAATTAATAACTATGTTGTGTATAATCATCAGGAGGCTGCTAAGTATGAAAATCATACTGAGAATGCCCTTTTATTGTATATGGCATGTACTCATGCCAGTAACCCAGTGTATGCAACATTGAAGATCAGAATCTATTTCTATGATTCTGTTCAGAATTAA |
|
Protein Sequence
|
MSKRPADIVISTPASKVRRRLNFDTPYTSRAAVPTVLVTNKRRAWIQRPMYRKPRMYRMYRSPDVPKGCEGPCKVQSYEQRHDVSHVGKVLCVSDVTRGNGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNTVMFFLVRDRRPFGTAMDFGQVFNMYDNEPSTATVKNDMRDRYQVLRKFTATVTGGQYASKEQALVRKFMKINNYVVYNHQEAAKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSVQN |
|
NCBI Accession
|
NP_803241.1
|
|
Location
|
1063-1467 |
|
Gene Name
|
C3 |
|
Protein Name
|
C3 protein |
|
Coding Region
|
ATGGATTCACGCACCGGGGAACCCATCACTGCAACTCAAGCAGAGAGTGGCGCGTATATCTGGACGGTCCCAAATCCCCTCTATTTCAAGATAACCAAGCACATCGAGAGACCATTCTTCCGGGAACACGACATAATAACAGTCCAAATACAGTTCAACCACAACCTGAGGAAAGCGTTGGGGATACACCAATGTTTTCCAATCTGCCAAATCTGGACTCGTTTACATCCTCGGACTGGGCATTTCTTAAGAGTATTTAAATACCAATGTATGAAGTATTTAGATAGATTAGGAGTTATTAGCATTAACAATGTAATTAGGGCAATCAATCATGTATTGTACAATGTATTCGAAGGCACAATTGATGCTCAATTTTCATATATAATAAAATTCAATATTTATTAA |
|
Protein Sequence
|
MDSRTGEPITATQAESGAYIWTVPNPLYFKITKHIERPFFREHDIITVQIQFNHNLRKALGIHQCFPICQIWTRLHPRTGHFLRVFKYQCMKYLDRLGVISINNVIRAINHVLYNVFEGTIDAQFSYIIKFNIY |
|
NCBI Accession
|
NP_803242.1
|
|
Location
|
1208-1615 |
|
Gene Name
|
C2 |
|
Protein Name
|
C2 protein |
|
Coding Region
|
ATGCAGAATTCATCACCCTCACGGAGCCACTGTACTCAGGTACCCATCAAAGTCAAGCACAGAATAGCCAAGAAGAGGCCAATTCGCAGACGTAGAGTTGATCTTCCCTGTGGATGCTCATACTTCATTAGCATCAACTGTCACAACCATGGATTCACGCACCGGGGAACCCATCACTGCAACTCAAGCAGAGAGTGGCGCGTATATCTGGACGGTCCCAAATCCCCTCTATTTCAAGATAACCAAGCACATCGAGAGACCATTCTTCCGGGAACACGACATAATAACAGTCCAAATACAGTTCAACCACAACCTGAGGAAAGCGTTGGGGATACACCAATGTTTTCCAATCTGCCAAATCTGGACTCGTTTACATCCTCGGACTGGGCATTTCTTAAGAGTATTTAA |
|
Protein Sequence
|
MQNSSPSRSHCTQVPIKVKHRIAKKRPIRRRRVDLPCGCSYFISINCHNHGFTHRGTHHCNSSREWRVYLDGPKSPLFQDNQAHRETILPGTRHNNSPNTVQPQPEESVGDTPMFSNLPNLDSFTSSDWAFLKSI |
|
NCBI Accession
|
NP_803243.1
|
|
Location
|
1521-2603 |
|
Gene Name
|
C1 |
|
Protein Name
|
replication-associated protein |
|
Coding Region
|
ATGCCTAGAGCCGGACGTTTTTCTATTAAAGCCAAAAATTATTTTCTTACATATCCCCAGTGCTCACTCACAAAGGAAGAAGCACTTTCCCAATTACAAACCCTACAAACCCCAACAAATAAAAAATATATCAAAATTTGCAGAGAGCTTCACGAAGATGGGTCTCCTCATCTCCACGTGCTTATCCAGTTCGAAGGGAAATACAACTGCACGAATAACAGATTCTTCGACCTGGTGTCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCAAGCTCAGACGTTAAGTCCTATCTGGAGAAGGACGGAGACACCCTCGACTGGGGCGAGTTTCAGATCGATGGAAGATCTGCAAGGGGAGGACAACAGACAGCCAATGACGCTTACGCCAAAGCACTTAACAGCGGAAGTAAGTCAGAGGCTCTTAATGTAATTAAAGAATTAGCCCCCAAAGATTATGTTTTACAATTTCATAATTTAAATTCTAATTTAGATAGGATTTTTGCACCTCCTTTAGAGGTTTTTGTTTGTCCTTTTCTTTCTTCTTCTTTTGATCAAGTTCCAGAAGAACTTGAAGAGTGGGTGTCCGAGAATGTAAGGGATGCCGCTGCGCGGCCTTGGAGGCCCAAAAGTATAGTCATCGAGGGAGAGAGCAGAACAGGAAAGACAATGTGGGCCAGGTCTTTAGGCCCACATAATTATTTGTGTGGGCACCTTGACTTGAGTCCAAAGGTGTACAGTAATGATGCATGGTACAACGTCATTGATGACGTAGACCCCCACTATCTAAAGCACTTTAAAGAATTCATGGGGGCCCAAAGAGATTGGCAAAGCAACACAAAGTACGGGAAGCCCATGCAAATTAAAGGTGGGATCCCAACAATCTTCCTCTGCAATCCAGGCCCAACATCATCGTATAAAGAGTACTTGGACGAGGAAAAGAATTCAGCATTAAAAGACTGGGCAGTAAAGAATGCAGAATTCATCACCCTCACGGAGCCACTGTACTCAGGTACCCATCAAAGTCAAGCACAGAATAGCCAAGAAGAGGCCAATTCGCAGACGTAG |
|
Protein Sequence
|
MPRAGRFSIKAKNYFLTYPQCSLTKEEALSQLQTLQTPTNKKYIKICRELHEDGSPHLHVLIQFEGKYNCTNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYLEKDGDTLDWGEFQIDGRSARGGQQTANDAYAKALNSGSKSEALNVIKELAPKDYVLQFHNLNSNLDRIFAPPLEVFVCPFLSSSFDQVPEELEEWVSENVRDAAARPWRPKSIVIEGESRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPMQIKGGIPTIFLCNPGPTSSYKEYLDEEKNSALKDWAVKNAEFITLTEPLYSGTHQSQAQNSQEEANSQT |
|
NCBI Accession
|
NP_803244.1
|
|
Location
|
2156-2446 |
|
Gene Name
|
C4 |
|
Protein Name
|
C4 protein |
|
Coding Region
|
ATGGGTCTCCTCATCTCCACGTGCTTATCCAGTTCGAAGGGAAATACAACTGCACGAATAACAGATTCTTCGACCTGGTGTCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCAAGCTCAGACGTTAAGTCCTATCTGGAGAAGGACGGAGACACCCTCGACTGGGGCGAGTTTCAGATCGATGGAAGATCTGCAAGGGGAGGACAACAGACAGCCAATGACGCTTACGCCAAAGCACTTAACAGCGGAAGTAAGTCAGAGGCTCTTAATGTAA |
|
Protein Sequence
|
MGLLISTCLSSSKGNTTARITDSSTWCPQPGQHISIRTFRELNQAQTLSPIWRRTETPSTGASFRSMEDLQGEDNRQPMTLTPKHLTAEVSQRLLM |