Tomato leaf curl Kerala virus


Basic Information

Genus Begomovirus
NCBI Assembly GCF_000881415.1
Isolate India
Release date 2015/2/22
Submitter Mukhopadhyay,S., Pandey,P., Nazeem,P.A., Mukherjee,S.K.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_011135
ACCGGATGGCCGCGAATTTTTTTGTGGGCCCCACAACGCACTAACTGACAACGACTAGTGGACCAATCACATGACGCGCTCAAAGCTTAATTGTTTTGTGGTCCCCTATTTATACTTCGGCACTAAGTATTGTACATTGCAAAATGTGGGATCCATTGTTAAACGAATTTCCCGACACTGTTCACGGTTTTAGATGTATGTTAGCAATTAAATATCTACAGTTAGTAGAAAACACTTATTCTCCTGATACATTAGGTTACGATTTAATTAGGGATTTAATTTCAGTTATTAGGGCTAGAAATTATGTCGAAGCGACCAGCAGATATAATCATTTCCACACCCGCTTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCCATATGTCAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACAAAGTCAAGAGCATGGGCGAACAGGCCCATGAACAGAAAGCCCAGGATGTACAGGATGTACAGAAGCCCAGATGTCCCTAGAGGATGTGAAGGCCCATGTAAGGTACAATCATTTGAGCAAAGGCATGATATTTCTCATATTGGGAAGGTCATGTGTATTAGTGACGTTACTCGTGGGATTGGGCTAACTCATAGGGTTGGTAAGCGTTTCTGTGTTAAATCCGTTTACGTTTTGGGTAAGATATGGATGGATGAGAATATCAAGACCAAGAATCACACGAATAGTGTTATGTTTTTTCTTGTTCGTGATCGTCGTCCTGTTGACAAGCCACAAGACTTTGGAGAGGTGTTCAATATGTTTGACAATGAGCCTAGCACTGCTACTGTGAAGAATGTGCATCGAGATCGTTATCATGTTTTGAGGAAGTGGCATGCAACTGTCACTGGTGGTCAGTACGCTTCAAAGGAACAGGCATTAGTGAAGAAGTTTGTTAACGTAATAATTTATGTTGTTTATAACCAGCAAGAGGCTGGGAAATATGAGAATCATTCTGAGAATGCTTTGATGTTGTATATGGCATGTACTCATGCCTCTAATTCTGTGTACGCTACGCTGAAGATACGTATCTACTTCTATGATTCTGTAACAAACTGAATTAATAAAGATTGTATTTTATTGAATATGATTGGTCTACATATACAATGTGGTGTAATACATTCCATAATACATGATCAACAGCTCTAATTACATTGTTAATACTGATGACTCCTAAATTATTTAAATATTTATACACTTGGGTCTTAAAGACTCTTAAGAAACGACCAGTCTGAGGCTGTGAGGTCATCCAGATTCGGAAGACTAGGAAACATTTGTGTATCCCCAACACTTTCCTCAGGTTGTGATTGAACTGTACTTGGACGGTGATGATGTCTTGGTTCATCAGGAATGGCCGGTTGTGGTGTTCTGTTATCTTGAAAAATAGGGGATTTTGAATCTCCCAGATAAACACGCCATTCTCTGCTTGAGCTGCAGTGATGGGTTCCCCTGTGCGTGAATCCATGGTTGTGGCAGGCTAATGCAATGAAGTATGAACAGCCGCACGGTAGATCAACACGTCGACGCCTGGTCCCCTTCTTGGCTAGCCTGTGCTGCACTTTGATTGGTACCTGAGTACAGTGGGCCTTCGAGGGTGACGAAGATCGCATTCTTTAATGCCCAGTTTTTTAGTGCAGAATTCTTATCTTCATCCAAGAACTCTTTATAGCTGGAATTTGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTCCCGTACTTTGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGATAGTGGGGGTCTACGTCATCAATGACGTTATACCAGGCATCATTACTGTAGACCTTTGGACTAAGGTCTAAATGACCACACAGATAATTATGTGGTCCCAGTGATCTGGCCCACATAGTCTTTCCCGTACTACTATCACCCCTCATGACTATACTTACAGGTCTCAAAGGCCGCGCAGCGGCACTGACGACGTTCTCAGCAGCCCACTCTTCAAGTTCTTCTGGAACTTGATCAAGGAAGAAAGAAAAAAAGGGGGAAACATAACCTTCTTTAGGAAGTGTAAAATCCCTATCTAAATTAAGATCTAATAATGGAAATTGGAAAACAAAACCTTGGGGTGCTAATTCTTTAATTACTCTAAGAGCCTCTGACTTACTGCCTGCGTTAAGCGCTGCGGCGTAAGCATCATACGCTGACTGTGACCCCCCCTCTGCAGATCTCCATTCGATCTGAAACTCTCCCCAGTCGAGGGTGTCTCCGTCCTTCTCCAGATAGGACTTGACGTCTGAGCTTGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGATACCAGGTCGAAGAATCTGTTATTTTGGCACTTGTATTTTCCTTCGAACTGGATGAGCACGTGAAGATGAGGTTCCCCATTTTCATGAAGCTCTCTGCAGATTTTTATGTATTTTTTGTTGGTTGGTGTTGCTAGGTTTTGTAATTGGGAAAGTGCTTCTTCTTTGGTGAGAGAGCATTTGGGATATGTTAGGAAATAATTTTTGGAGTTAATAAGGAAACGCTTTGGAGGCATGTTGACTAAGATAGAGGACCCGATTGACTGCTCTTGCAACTCTCCCCTGTATATCAGGTCTCAATATATAGTGAGACCCAAATGGCATAATGGTAATTAAAAAAACATTAATTTGAAATTCAAAACAAAAGGCTAAAGCGGCCATCCGTATAATATT

Gene Information

NCBI Accession YP_002124294.1
Location 144-500
Gene Name AV2
Protein Name pre-coat protein
Coding Region ATGTGGGATCCATTGTTAAACGAATTTCCCGACACTGTTCACGGTTTTAGATGTATGTTAGCAATTAAATATCTACAGTTAGTAGAAAACACTTATTCTCCTGATACATTAGGTTACGATTTAATTAGGGATTTAATTTCAGTTATTAGGGCTAGAAATTATGTCGAAGCGACCAGCAGATATAATCATTTCCACACCCGCTTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCCATATGTCAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACAAAGTCAAGAGCATGGGCGAACAGGCCCATGAACAGAAAGCCCAGGATGTACAGGATGTACAGAAGCCCAGATGTCCCTAG
Protein Sequence MWDPLLNEFPDTVHGFRCMLAIKYLQLVENTYSPDTLGYDLIRDLISVIRARNYVEATSRYNHFHTRFEGTPPSQLRQPICQPCCCPHCPRHKVKSMGEQAHEQKAQDVQDVQKPRCP

NCBI Accession YP_002124295.1
Location 304-1074
Gene Name AV1
Protein Name coat protein
Coding Region ATGTCGAAGCGACCAGCAGATATAATCATTTCCACACCCGCTTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCCATATGTCAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACAAAGTCAAGAGCATGGGCGAACAGGCCCATGAACAGAAAGCCCAGGATGTACAGGATGTACAGAAGCCCAGATGTCCCTAGAGGATGTGAAGGCCCATGTAAGGTACAATCATTTGAGCAAAGGCATGATATTTCTCATATTGGGAAGGTCATGTGTATTAGTGACGTTACTCGTGGGATTGGGCTAACTCATAGGGTTGGTAAGCGTTTCTGTGTTAAATCCGTTTACGTTTTGGGTAAGATATGGATGGATGAGAATATCAAGACCAAGAATCACACGAATAGTGTTATGTTTTTTCTTGTTCGTGATCGTCGTCCTGTTGACAAGCCACAAGACTTTGGAGAGGTGTTCAATATGTTTGACAATGAGCCTAGCACTGCTACTGTGAAGAATGTGCATCGAGATCGTTATCATGTTTTGAGGAAGTGGCATGCAACTGTCACTGGTGGTCAGTACGCTTCAAAGGAACAGGCATTAGTGAAGAAGTTTGTTAACGTAATAATTTATGTTGTTTATAACCAGCAAGAGGCTGGGAAATATGAGAATCATTCTGAGAATGCTTTGATGTTGTATATGGCATGTACTCATGCCTCTAATTCTGTGTACGCTACGCTGAAGATACGTATCTACTTCTATGATTCTGTAACAAACTGA
Protein Sequence MSKRPADIIISTPASKVRRRLNFDSPYVSRAAAPIVRVTKSRAWANRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFEQRHDISHIGKVMCISDVTRGIGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEPSTATVKNVHRDRYHVLRKWHATVTGGQYASKEQALVKKFVNVIIYVVYNQQEAGKYENHSENALMLYMACTHASNSVYATLKIRIYFYDSVTN

NCBI Accession YP_002124296.1
Location 1076-1480
Gene Name AC3
Protein Name AC3
Coding Region ATGGATTCACGCACAGGGGAACCCATCACTGCAGCTCAAGCAGAGAATGGCGTGTTTATCTGGGAGATTCAAAATCCCCTATTTTTCAAGATAACAGAACACCACAACCGGCCATTCCTGATGAACCAAGACATCATCACCGTCCAAGTACAGTTCAATCACAACCTGAGGAAAGTGTTGGGGATACACAAATGTTTCCTAGTCTTCCGAATCTGGATGACCTCACAGCCTCAGACTGGTCGTTTCTTAAGAGTCTTTAAGACCCAAGTGTATAAATATTTAAATAATTTAGGAGTCATCAGTATTAACAATGTAATTAGAGCTGTTGATCATGTATTATGGAATGTATTACACCACATTGTATATGTAGACCAATCATATTCAATAAAATACAATCTTTATTAA
Protein Sequence MDSRTGEPITAAQAENGVFIWEIQNPLFFKITEHHNRPFLMNQDIITVQVQFNHNLRKVLGIHKCFLVFRIWMTSQPQTGRFLRVFKTQVYKYLNNLGVISINNVIRAVDHVLWNVLHHIVYVDQSYSIKYNLY

NCBI Accession YP_002124297.1
Location 1221-1625
Gene Name AC2
Protein Name AC2
Coding Region ATGCGATCTTCGTCACCCTCGAAGGCCCACTGTACTCAGGTACCAATCAAAGTGCAGCACAGGCTAGCCAAGAAGGGGACCAGGCGTCGACGTGTTGATCTACCGTGCGGCTGTTCATACTTCATTGCATTAGCCTGCCACAACCATGGATTCACGCACAGGGGAACCCATCACTGCAGCTCAAGCAGAGAATGGCGTGTTTATCTGGGAGATTCAAAATCCCCTATTTTTCAAGATAACAGAACACCACAACCGGCCATTCCTGATGAACCAAGACATCATCACCGTCCAAGTACAGTTCAATCACAACCTGAGGAAAGTGTTGGGGATACACAAATGTTTCCTAGTCTTCCGAATCTGGATGACCTCACAGCCTCAGACTGGTCGTTTCTTAAGAGTCTTTAA
Protein Sequence MRSSSPSKAHCTQVPIKVQHRLAKKGTRRRRVDLPCGCSYFIALACHNHGFTHRGTHHCSSSREWRVYLGDSKSPIFQDNRTPQPAIPDEPRHHHRPSTVQSQPEESVGDTQMFPSLPNLDDLTASDWSFLKSL

NCBI Accession YP_002124298.1
Location 1528-2610
Gene Name AC1
Protein Name AC1
Coding Region ATGCCTCCAAAGCGTTTCCTTATTAACTCCAAAAATTATTTCCTAACATATCCCAAATGCTCTCTCACCAAAGAAGAAGCACTTTCCCAATTACAAAACCTAGCAACACCAACCAACAAAAAATACATAAAAATCTGCAGAGAGCTTCATGAAAATGGGGAACCTCATCTTCACGTGCTCATCCAGTTCGAAGGAAAATACAAGTGCCAAAATAACAGATTCTTCGACCTGGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCAAGCTCAGACGTCAAGTCCTATCTGGAGAAGGACGGAGACACCCTCGACTGGGGAGAGTTTCAGATCGAATGGAGATCTGCAGAGGGGGGGTCACAGTCAGCGTATGATGCTTACGCCGCAGCGCTTAACGCAGGCAGTAAGTCAGAGGCTCTTAGAGTAATTAAAGAATTAGCACCCCAAGGTTTTGTTTTCCAATTTCCATTATTAGATCTTAATTTAGATAGGGATTTTACACTTCCTAAAGAAGGTTATGTTTCCCCCTTTTTTTCTTTCTTCCTTGATCAAGTTCCAGAAGAACTTGAAGAGTGGGCTGCTGAGAACGTCGTCAGTGCCGCTGCGCGGCCTTTGAGACCTGTAAGTATAGTCATGAGGGGTGATAGTAGTACGGGAAAGACTATGTGGGCCAGATCACTGGGACCACATAATTATCTGTGTGGTCATTTAGACCTTAGTCCAAAGGTCTACAGTAATGATGCCTGGTATAACGTCATTGATGACGTAGACCCCCACTATCTAAAGCACTTTAAAGAATTCATGGGGGCCCAAAGGGACTGGCAATCAAATACAAAGTACGGGAAGCCAGTTCAAATTAAAGGCGGAATTCCCACTATCTTCCTCTGCAATCCAGGACCAAATTCCAGCTATAAAGAGTTCTTGGATGAAGATAAGAATTCTGCACTAAAAAACTGGGCATTAAAGAATGCGATCTTCGTCACCCTCGAAGGCCCACTGTACTCAGGTACCAATCAAAGTGCAGCACAGGCTAGCCAAGAAGGGGACCAGGCGTCGACGTGTTGA
Protein Sequence MPPKRFLINSKNYFLTYPKCSLTKEEALSQLQNLATPTNKKYIKICRELHENGEPHLHVLIQFEGKYKCQNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYLEKDGDTLDWGEFQIEWRSAEGGSQSAYDAYAAALNAGSKSEALRVIKELAPQGFVFQFPLLDLNLDRDFTLPKEGYVSPFFSFFLDQVPEELEEWAAENVVSAAARPLRPVSIVMRGDSSTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEDKNSALKNWALKNAIFVTLEGPLYSGTNQSAAQASQEGDQASTC

NCBI Accession YP_002124299.1
Location 2166-2462
Gene Name AC4
Protein Name AC4
Coding Region ATGAAAATGGGGAACCTCATCTTCACGTGCTCATCCAGTTCGAAGGAAAATACAAGTGCCAAAATAACAGATTCTTCGACCTGGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCAAGCTCAGACGTCAAGTCCTATCTGGAGAAGGACGGAGACACCCTCGACTGGGGAGAGTTTCAGATCGAATGGAGATCTGCAGAGGGGGGGTCACAGTCAGCGTATGATGCTTACGCCGCAGCGCTTAACGCAGGCAGTAAGTCAGAGGCTCTTAGAGTAA
Protein Sequence MKMGNLIFTCSSSSKENTSAKITDSSTWYPQPGQHISIRTFRELNQAQTSSPIWRRTETPSTGESFRSNGDLQRGGHSQRMMLTPQRLTQAVSQRLLE