Tomato leaf curl Karnataka virus 3


Basic Information

Genus Begomovirus
NCBI Assembly GCF_004787135.1
Isolate India: Rauke, Punjab
Release date 2021/6/1
Submitter Swarnalatha,P., Venkataravanappa,V., Jalali,S., KrishnaReddy,M.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_055134
ACCGGATGGCCGCGATTTTTTTGTGGGCCCCTTAACGCATTAACTGACAAGGACATGCGAACCAATCATATGACACGCTCAAAGCCTAATTGTTTTTTGGTACCTTATTTAAACTTCGTCCCCAAGTAGTTCTTTTGCACCTATGTGGGATCCATTGTTGAACGAGTTTCCCGAAACCGTTCACGGTTTTAGATGTATGTTAGCAGTTAAATATCTGCAGTTAGTAGAAAAGACTTATTCTCCTGACACATTAGGTTACGATTTAATTAGGGATTTAATTTCAGTTATTAGGGCTAGAAATTATGTCGAAGCGACCAGCAGATATCATCATTTCAACGCCCGCATCGAAGGTACGCCGACGTCTCAACTTCGACAGCCCCTATGGAGCTCGTGCAGTTGTCCCCATTGCCCGCGTCACAAAAGCAAAGGCCTGGACCAACAGGCCGATGAACAGAAAACCCAGAATGTACAGAATGTACAGGAGTCCCGACGTTCCTAGGGGCTGTGAAGGCCCTTGTAAGGTGCAGTCTTTTGAATCTAGGCACGATGTCTCTCATATTGGCAAAGTCATGTGCGTTAGTGATGTTACTCGAGGAACTGGACTCACACATCGCGTGGGGAAGCGATTTTGTGTGAAATCTGTCTATGTGCTGGGGAAGATATGGATGGATGAAAACATCAAGACAAAAAACCATACTAACAGTGTCATGTTTTTTTTAGTTCGTGACCGTCGTCCTACAGGATCCCCCCAAGATTTTGGTGAAGTTTTTAACATGTTTGACAATGAACCGAGTACAGCAACGGTGAAGAACATGCATCGTGATCGTTATCAAGTGTTACGGAAGTGGCATGCGACTGTGACGGGAGGAACTTATGCATCTAAGGAGCAAGCATTAGTTAGGAAGTTTGTTAGGGTTAATAATTATGTTGTTTATAATCAACAAGAGGCAGGCAAGTATGAGAATCATACTGAAAATGCATTAATGTTGTATATGGCCTGTACTCACGCATCAAATCCTGTATACGCTACTTTGAAAATCCGGATCTATTTCTATGATTCGGTCACAAATTAATAAATATCGAGTTTTATATCATATGAAGTCCATACATCAATCGTCTGTTCCAATACATTATCCAACACATGATACACTGCTCGTATTACATTATATATTCCTATGACACCTAACATATCCAGGTACTTAAGGACCTGGGTTTTAAAGACTCTCAAGAAAATCCCAATCTGAGGGCGTAAGCCCGTCCAGATTTTGAAAGTTAGAAAACACTTGTGAAGTCCCAGGGCTTTCCGCAGGTTGTGGTTGAACTGTATTTGAATCTTGATGATGTCGTGCTGTGTTAGGAAGGGCCTGCTGTCGTGTTTCAAAATTTTGAAATACAGGGGATTTCGAATTTCCCAGGTATATACGCCACTCTCTGTACGATCCGCAGTGATGTACTCCCCTGTGCGTGAATCCATGATCGTGGCAGTTGATCGATATGTAATACGAACACCCACACGGCAGATCAACTCGCCTCCTGCGAATGCTCTTCTTCTTCTTCTGCGGGAGCGATGTTTTCGCGACCGGAATAGAGTGGTTCTTCGAGTGTGATGAAGACTGCATTCTTGATTGCCCACTGCTTCAGTGCTGCATTTTTTTCTTCGTCCAGATATTCCTTATAGCTGCTGTTTGGACCTTTATTGCACAGGAAGATAGTGGGAATTCCACCTTTAATCATGACTGGCTTTCCGTACTTGGTGTTGCTTTGCCAGTCACGCTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGATAGTGGGGATCAACGTCATCAATGACGTTGTACCATGCATCATTGCTGTAGATCTTTGGGCTAAGGTCCAGATGACCACACAGATAATTATGTGAACCCAATGACCTGGCCCACATTGTTTTACCAGTACTACTATCACCCTCAATAACAATACTTATGGGTCTAATTGGCCGCGCAGCGGCATCGACAATGTTTTCGCAAGCCCACTCTTCAAGTTCTTCGGGAACTTGGTCGAAAGAAGAAGATGAAAAAGGAGAAATATACAGAGCTGGTGGATCCTGAAAATATCTATCTAAATTTGAATTTAAATTATGAAATTGAAGTACAAAGTCTCTGGGAGCTTTCTCCTTCAGTATATTGAGGGCCTGAGCTTTGGACCCTGAATTGATTGCCTCGGCATATGCGTCGTTGGCAGATTGGCAACCTCCTCTAGCTGATCTTCCATCGACTTGGAAAACTCCATGATCAATGACGTCTCCGTCTTTTTCCATGTAGGATTTGACATCGCTTGAGCTCTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGATGTGAGGTCGAAGAATCTATTGTTTTTGCACTGGAACTTTCCTTCGAACTGGATGAGCACATGCAAGTGAGGAGTCCCATCTTCGTGAAGCTCTCTGCAAATTCTAATAAATTTTTTTGAAGTGGGTGTATGTATATTTAATAATTGGGAAAGTGCTTCTTCTTTAGTTAGAGAGCACTTCGGATAAGTGAGAAAATAATTTTTGGCATTTATTTTAAACCGATTGGGGGCTGCCATATTGACTTGGTCAATTGGAGTCTCTCAACTCTTTCTATGTATCGGTGTATTGGAGTCCTATATATATGGAGACTCTAATGGCATAAATGTAAATATTTTACTTTAATTCAAAACCCTCACGCTCCAAAAAGCGGCCATCCGTATAATATT

Gene Information

NCBI Accession YP_010084358.1
Location 143-499
Protein Name AV2
Coding Region ATGTGGGATCCATTGTTGAACGAGTTTCCCGAAACCGTTCACGGTTTTAGATGTATGTTAGCAGTTAAATATCTGCAGTTAGTAGAAAAGACTTATTCTCCTGACACATTAGGTTACGATTTAATTAGGGATTTAATTTCAGTTATTAGGGCTAGAAATTATGTCGAAGCGACCAGCAGATATCATCATTTCAACGCCCGCATCGAAGGTACGCCGACGTCTCAACTTCGACAGCCCCTATGGAGCTCGTGCAGTTGTCCCCATTGCCCGCGTCACAAAAGCAAAGGCCTGGACCAACAGGCCGATGAACAGAAAACCCAGAATGTACAGAATGTACAGGAGTCCCGACGTTCCTAG
Protein Sequence MWDPLLNEFPETVHGFRCMLAVKYLQLVEKTYSPDTLGYDLIRDLISVIRARNYVEATSRYHHFNARIEGTPTSQLRQPLWSSCSCPHCPRHKSKGLDQQADEQKTQNVQNVQESRRS

NCBI Accession YP_010084359.1
Location 303-1073
Protein Name AV1
Coding Region ATGTCGAAGCGACCAGCAGATATCATCATTTCAACGCCCGCATCGAAGGTACGCCGACGTCTCAACTTCGACAGCCCCTATGGAGCTCGTGCAGTTGTCCCCATTGCCCGCGTCACAAAAGCAAAGGCCTGGACCAACAGGCCGATGAACAGAAAACCCAGAATGTACAGAATGTACAGGAGTCCCGACGTTCCTAGGGGCTGTGAAGGCCCTTGTAAGGTGCAGTCTTTTGAATCTAGGCACGATGTCTCTCATATTGGCAAAGTCATGTGCGTTAGTGATGTTACTCGAGGAACTGGACTCACACATCGCGTGGGGAAGCGATTTTGTGTGAAATCTGTCTATGTGCTGGGGAAGATATGGATGGATGAAAACATCAAGACAAAAAACCATACTAACAGTGTCATGTTTTTTTTAGTTCGTGACCGTCGTCCTACAGGATCCCCCCAAGATTTTGGTGAAGTTTTTAACATGTTTGACAATGAACCGAGTACAGCAACGGTGAAGAACATGCATCGTGATCGTTATCAAGTGTTACGGAAGTGGCATGCGACTGTGACGGGAGGAACTTATGCATCTAAGGAGCAAGCATTAGTTAGGAAGTTTGTTAGGGTTAATAATTATGTTGTTTATAATCAACAAGAGGCAGGCAAGTATGAGAATCATACTGAAAATGCATTAATGTTGTATATGGCCTGTACTCACGCATCAAATCCTGTATACGCTACTTTGAAAATCCGGATCTATTTCTATGATTCGGTCACAAATTAA
Protein Sequence MSKRPADIIISTPASKVRRRLNFDSPYGARAVVPIARVTKAKAWTNRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVSHIGKVMCVSDVTRGTGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPTGSPQDFGEVFNMFDNEPSTATVKNMHRDRYQVLRKWHATVTGGTYASKEQALVRKFVRVNNYVVYNQQEAGKYENHTENALMLYMACTHASNPVYATLKIRIYFYDSVTN

NCBI Accession YP_010084360.1
Location 1070-1474
Protein Name AC3
Coding Region ATGGATTCACGCACAGGGGAGTACATCACTGCGGATCGTACAGAGAGTGGCGTATATACCTGGGAAATTCGAAATCCCCTGTATTTCAAAATTTTGAAACACGACAGCAGGCCCTTCCTAACACAGCACGACATCATCAAGATTCAAATACAGTTCAACCACAACCTGCGGAAAGCCCTGGGACTTCACAAGTGTTTTCTAACTTTCAAAATCTGGACGGGCTTACGCCCTCAGATTGGGATTTTCTTGAGAGTCTTTAAAACCCAGGTCCTTAAGTACCTGGATATGTTAGGTGTCATAGGAATATATAATGTAATACGAGCAGTGTATCATGTGTTGGATAATGTATTGGAACAGACGATTGATGTATGGACTTCATATGATATAAAACTCGATATTTATTAA
Protein Sequence MDSRTGEYITADRTESGVYTWEIRNPLYFKILKHDSRPFLTQHDIIKIQIQFNHNLRKALGLHKCFLTFKIWTGLRPQIGIFLRVFKTQVLKYLDMLGVIGIYNVIRAVYHVLDNVLEQTIDVWTSYDIKLDIY

NCBI Accession YP_010084361.1
Location 1215-1619
Protein Name AC2
Coding Region ATGCAGTCTTCATCACACTCGAAGAACCACTCTATTCCGGTCGCGAAAACATCGCTCCCGCAGAAGAAGAAGAAGAGCATTCGCAGGAGGCGAGTTGATCTGCCGTGTGGGTGTTCGTATTACATATCGATCAACTGCCACGATCATGGATTCACGCACAGGGGAGTACATCACTGCGGATCGTACAGAGAGTGGCGTATATACCTGGGAAATTCGAAATCCCCTGTATTTCAAAATTTTGAAACACGACAGCAGGCCCTTCCTAACACAGCACGACATCATCAAGATTCAAATACAGTTCAACCACAACCTGCGGAAAGCCCTGGGACTTCACAAGTGTTTTCTAACTTTCAAAATCTGGACGGGCTTACGCCCTCAGATTGGGATTTTCTTGAGAGTCTTTAA
Protein Sequence MQSSSHSKNHSIPVAKTSLPQKKKKSIRRRRVDLPCGCSYYISINCHDHGFTHRGVHHCGSYREWRIYLGNSKSPVFQNFETRQQALPNTARHHQDSNTVQPQPAESPGTSQVFSNFQNLDGLTPSDWDFLESL

NCBI Accession YP_010084362.1
Location 1522-2607
Protein Name AC1
Coding Region ATGGCAGCCCCCAATCGGTTTAAAATAAATGCCAAAAATTATTTTCTCACTTATCCGAAGTGCTCTCTAACTAAAGAAGAAGCACTTTCCCAATTATTAAATATACATACACCCACTTCAAAAAAATTTATTAGAATTTGCAGAGAGCTTCACGAAGATGGGACTCCTCACTTGCATGTGCTCATCCAGTTCGAAGGAAAGTTCCAGTGCAAAAACAATAGATTCTTCGACCTCACATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAGAGCTCAAGCGATGTCAAATCCTACATGGAAAAAGACGGAGACGTCATTGATCATGGAGTTTTCCAAGTCGATGGAAGATCAGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAATTCAGGGTCCAAAGCTCAGGCCCTCAATATACTGAAGGAGAAAGCTCCCAGAGACTTTGTACTTCAATTTCATAATTTAAATTCAAATTTAGATAGATATTTTCAGGATCCACCAGCTCTGTATATTTCTCCTTTTTCATCTTCTTCTTTCGACCAAGTTCCCGAAGAACTTGAAGAGTGGGCTTGCGAAAACATTGTCGATGCCGCTGCGCGGCCAATTAGACCCATAAGTATTGTTATTGAGGGTGATAGTAGTACTGGTAAAACAATGTGGGCCAGGTCATTGGGTTCACATAATTATCTGTGTGGTCATCTGGACCTTAGCCCAAAGATCTACAGCAATGATGCATGGTACAACGTCATTGATGACGTTGATCCCCACTATCTAAAGCACTTTAAAGAATTCATGGGGGCCCAGCGTGACTGGCAAAGCAACACCAAGTACGGAAAGCCAGTCATGATTAAAGGTGGAATTCCCACTATCTTCCTGTGCAATAAAGGTCCAAACAGCAGCTATAAGGAATATCTGGACGAAGAAAAAAATGCAGCACTGAAGCAGTGGGCAATCAAGAATGCAGTCTTCATCACACTCGAAGAACCACTCTATTCCGGTCGCGAAAACATCGCTCCCGCAGAAGAAGAAGAAGAGCATTCGCAGGAGGCGAGTTGA
Protein Sequence MAAPNRFKINAKNYFLTYPKCSLTKEEALSQLLNIHTPTSKKFIRICRELHEDGTPHLHVLIQFEGKFQCKNNRFFDLTSPTRSAHFHPNIQGAKSSSDVKSYMEKDGDVIDHGVFQVDGRSARGGCQSANDAYAEAINSGSKAQALNILKEKAPRDFVLQFHNLNSNLDRYFQDPPALYISPFSSSSFDQVPEELEEWACENIVDAAARPIRPISIVIEGDSSTGKTMWARSLGSHNYLCGHLDLSPKIYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVMIKGGIPTIFLCNKGPNSSYKEYLDEEKNAALKQWAIKNAVFITLEEPLYSGRENIAPAEEEEEHSQEAS

NCBI Accession YP_010084363.1
Location 2157-2450
Protein Name AC4
Coding Region ATGGGACTCCTCACTTGCATGTGCTCATCCAGTTCGAAGGAAAGTTCCAGTGCAAAAACAATAGATTCTTCGACCTCACATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAGAGCTCAAGCGATGTCAAATCCTACATGGAAAAAGACGGAGACGTCATTGATCATGGAGTTTTCCAAGTCGATGGAAGATCAGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAATTCAGGGTCCAAAGCTCAGGCCCTCAATATACTGA
Protein Sequence MGLLTCMCSSSSKESSSAKTIDSSTSHPQPGQHISIRTFRELRAQAMSNPTWKKTETSLIMEFSKSMEDQLEEVANLPTTHMPRQSIQGPKLRPSIY