Tomato leaf curl Karnataka virus 3
Basic Information
Genus |
Begomovirus
|
NCBI Assembly |
GCF_004787135.1 |
Isolate |
India: Rauke, Punjab |
Release date |
2021/6/1 |
Submitter |
Swarnalatha,P., Venkataravanappa,V., Jalali,S., KrishnaReddy,M. |
Host |
|
Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGATTTTTTTGTGGGCCCCTTAACGCATTAACTGACAAGGACATGCGAACCAATCATATGACACGCTCAAAGCCTAATTGTTTTTTGGTACCTTATTTAAACTTCGTCCCCAAGTAGTTCTTTTGCACCTATGTGGGATCCATTGTTGAACGAGTTTCCCGAAACCGTTCACGGTTTTAGATGTATGTTAGCAGTTAAATATCTGCAGTTAGTAGAAAAGACTTATTCTCCTGACACATTAGGTTACGATTTAATTAGGGATTTAATTTCAGTTATTAGGGCTAGAAATTATGTCGAAGCGACCAGCAGATATCATCATTTCAACGCCCGCATCGAAGGTACGCCGACGTCTCAACTTCGACAGCCCCTATGGAGCTCGTGCAGTTGTCCCCATTGCCCGCGTCACAAAAGCAAAGGCCTGGACCAACAGGCCGATGAACAGAAAACCCAGAATGTACAGAATGTACAGGAGTCCCGACGTTCCTAGGGGCTGTGAAGGCCCTTGTAAGGTGCAGTCTTTTGAATCTAGGCACGATGTCTCTCATATTGGCAAAGTCATGTGCGTTAGTGATGTTACTCGAGGAACTGGACTCACACATCGCGTGGGGAAGCGATTTTGTGTGAAATCTGTCTATGTGCTGGGGAAGATATGGATGGATGAAAACATCAAGACAAAAAACCATACTAACAGTGTCATGTTTTTTTTAGTTCGTGACCGTCGTCCTACAGGATCCCCCCAAGATTTTGGTGAAGTTTTTAACATGTTTGACAATGAACCGAGTACAGCAACGGTGAAGAACATGCATCGTGATCGTTATCAAGTGTTACGGAAGTGGCATGCGACTGTGACGGGAGGAACTTATGCATCTAAGGAGCAAGCATTAGTTAGGAAGTTTGTTAGGGTTAATAATTATGTTGTTTATAATCAACAAGAGGCAGGCAAGTATGAGAATCATACTGAAAATGCATTAATGTTGTATATGGCCTGTACTCACGCATCAAATCCTGTATACGCTACTTTGAAAATCCGGATCTATTTCTATGATTCGGTCACAAATTAATAAATATCGAGTTTTATATCATATGAAGTCCATACATCAATCGTCTGTTCCAATACATTATCCAACACATGATACACTGCTCGTATTACATTATATATTCCTATGACACCTAACATATCCAGGTACTTAAGGACCTGGGTTTTAAAGACTCTCAAGAAAATCCCAATCTGAGGGCGTAAGCCCGTCCAGATTTTGAAAGTTAGAAAACACTTGTGAAGTCCCAGGGCTTTCCGCAGGTTGTGGTTGAACTGTATTTGAATCTTGATGATGTCGTGCTGTGTTAGGAAGGGCCTGCTGTCGTGTTTCAAAATTTTGAAATACAGGGGATTTCGAATTTCCCAGGTATATACGCCACTCTCTGTACGATCCGCAGTGATGTACTCCCCTGTGCGTGAATCCATGATCGTGGCAGTTGATCGATATGTAATACGAACACCCACACGGCAGATCAACTCGCCTCCTGCGAATGCTCTTCTTCTTCTTCTGCGGGAGCGATGTTTTCGCGACCGGAATAGAGTGGTTCTTCGAGTGTGATGAAGACTGCATTCTTGATTGCCCACTGCTTCAGTGCTGCATTTTTTTCTTCGTCCAGATATTCCTTATAGCTGCTGTTTGGACCTTTATTGCACAGGAAGATAGTGGGAATTCCACCTTTAATCATGACTGGCTTTCCGTACTTGGTGTTGCTTTGCCAGTCACGCTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGATAGTGGGGATCAACGTCATCAATGACGTTGTACCATGCATCATTGCTGTAGATCTTTGGGCTAAGGTCCAGATGACCACACAGATAATTATGTGAACCCAATGACCTGGCCCACATTGTTTTACCAGTACTACTATCACCCTCAATAACAATACTTATGGGTCTAATTGGCCGCGCAGCGGCATCGACAATGTTTTCGCAAGCCCACTCTTCAAGTTCTTCGGGAACTTGGTCGAAAGAAGAAGATGAAAAAGGAGAAATATACAGAGCTGGTGGATCCTGAAAATATCTATCTAAATTTGAATTTAAATTATGAAATTGAAGTACAAAGTCTCTGGGAGCTTTCTCCTTCAGTATATTGAGGGCCTGAGCTTTGGACCCTGAATTGATTGCCTCGGCATATGCGTCGTTGGCAGATTGGCAACCTCCTCTAGCTGATCTTCCATCGACTTGGAAAACTCCATGATCAATGACGTCTCCGTCTTTTTCCATGTAGGATTTGACATCGCTTGAGCTCTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGATGTGAGGTCGAAGAATCTATTGTTTTTGCACTGGAACTTTCCTTCGAACTGGATGAGCACATGCAAGTGAGGAGTCCCATCTTCGTGAAGCTCTCTGCAAATTCTAATAAATTTTTTTGAAGTGGGTGTATGTATATTTAATAATTGGGAAAGTGCTTCTTCTTTAGTTAGAGAGCACTTCGGATAAGTGAGAAAATAATTTTTGGCATTTATTTTAAACCGATTGGGGGCTGCCATATTGACTTGGTCAATTGGAGTCTCTCAACTCTTTCTATGTATCGGTGTATTGGAGTCCTATATATATGGAGACTCTAATGGCATAAATGTAAATATTTTACTTTAATTCAAAACCCTCACGCTCCAAAAAGCGGCCATCCGTATAATATT
Gene Information
NCBI Accession
|
YP_010084358.1
|
Location
|
143-499 |
Protein Name
|
AV2 |
Coding Region
|
ATGTGGGATCCATTGTTGAACGAGTTTCCCGAAACCGTTCACGGTTTTAGATGTATGTTAGCAGTTAAATATCTGCAGTTAGTAGAAAAGACTTATTCTCCTGACACATTAGGTTACGATTTAATTAGGGATTTAATTTCAGTTATTAGGGCTAGAAATTATGTCGAAGCGACCAGCAGATATCATCATTTCAACGCCCGCATCGAAGGTACGCCGACGTCTCAACTTCGACAGCCCCTATGGAGCTCGTGCAGTTGTCCCCATTGCCCGCGTCACAAAAGCAAAGGCCTGGACCAACAGGCCGATGAACAGAAAACCCAGAATGTACAGAATGTACAGGAGTCCCGACGTTCCTAG |
Protein Sequence
|
MWDPLLNEFPETVHGFRCMLAVKYLQLVEKTYSPDTLGYDLIRDLISVIRARNYVEATSRYHHFNARIEGTPTSQLRQPLWSSCSCPHCPRHKSKGLDQQADEQKTQNVQNVQESRRS |
NCBI Accession
|
YP_010084359.1
|
Location
|
303-1073 |
Protein Name
|
AV1 |
Coding Region
|
ATGTCGAAGCGACCAGCAGATATCATCATTTCAACGCCCGCATCGAAGGTACGCCGACGTCTCAACTTCGACAGCCCCTATGGAGCTCGTGCAGTTGTCCCCATTGCCCGCGTCACAAAAGCAAAGGCCTGGACCAACAGGCCGATGAACAGAAAACCCAGAATGTACAGAATGTACAGGAGTCCCGACGTTCCTAGGGGCTGTGAAGGCCCTTGTAAGGTGCAGTCTTTTGAATCTAGGCACGATGTCTCTCATATTGGCAAAGTCATGTGCGTTAGTGATGTTACTCGAGGAACTGGACTCACACATCGCGTGGGGAAGCGATTTTGTGTGAAATCTGTCTATGTGCTGGGGAAGATATGGATGGATGAAAACATCAAGACAAAAAACCATACTAACAGTGTCATGTTTTTTTTAGTTCGTGACCGTCGTCCTACAGGATCCCCCCAAGATTTTGGTGAAGTTTTTAACATGTTTGACAATGAACCGAGTACAGCAACGGTGAAGAACATGCATCGTGATCGTTATCAAGTGTTACGGAAGTGGCATGCGACTGTGACGGGAGGAACTTATGCATCTAAGGAGCAAGCATTAGTTAGGAAGTTTGTTAGGGTTAATAATTATGTTGTTTATAATCAACAAGAGGCAGGCAAGTATGAGAATCATACTGAAAATGCATTAATGTTGTATATGGCCTGTACTCACGCATCAAATCCTGTATACGCTACTTTGAAAATCCGGATCTATTTCTATGATTCGGTCACAAATTAA |
Protein Sequence
|
MSKRPADIIISTPASKVRRRLNFDSPYGARAVVPIARVTKAKAWTNRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVSHIGKVMCVSDVTRGTGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPTGSPQDFGEVFNMFDNEPSTATVKNMHRDRYQVLRKWHATVTGGTYASKEQALVRKFVRVNNYVVYNQQEAGKYENHTENALMLYMACTHASNPVYATLKIRIYFYDSVTN |
NCBI Accession
|
YP_010084360.1
|
Location
|
1070-1474 |
Protein Name
|
AC3 |
Coding Region
|
ATGGATTCACGCACAGGGGAGTACATCACTGCGGATCGTACAGAGAGTGGCGTATATACCTGGGAAATTCGAAATCCCCTGTATTTCAAAATTTTGAAACACGACAGCAGGCCCTTCCTAACACAGCACGACATCATCAAGATTCAAATACAGTTCAACCACAACCTGCGGAAAGCCCTGGGACTTCACAAGTGTTTTCTAACTTTCAAAATCTGGACGGGCTTACGCCCTCAGATTGGGATTTTCTTGAGAGTCTTTAAAACCCAGGTCCTTAAGTACCTGGATATGTTAGGTGTCATAGGAATATATAATGTAATACGAGCAGTGTATCATGTGTTGGATAATGTATTGGAACAGACGATTGATGTATGGACTTCATATGATATAAAACTCGATATTTATTAA |
Protein Sequence
|
MDSRTGEYITADRTESGVYTWEIRNPLYFKILKHDSRPFLTQHDIIKIQIQFNHNLRKALGLHKCFLTFKIWTGLRPQIGIFLRVFKTQVLKYLDMLGVIGIYNVIRAVYHVLDNVLEQTIDVWTSYDIKLDIY |
NCBI Accession
|
YP_010084361.1
|
Location
|
1215-1619 |
Protein Name
|
AC2 |
Coding Region
|
ATGCAGTCTTCATCACACTCGAAGAACCACTCTATTCCGGTCGCGAAAACATCGCTCCCGCAGAAGAAGAAGAAGAGCATTCGCAGGAGGCGAGTTGATCTGCCGTGTGGGTGTTCGTATTACATATCGATCAACTGCCACGATCATGGATTCACGCACAGGGGAGTACATCACTGCGGATCGTACAGAGAGTGGCGTATATACCTGGGAAATTCGAAATCCCCTGTATTTCAAAATTTTGAAACACGACAGCAGGCCCTTCCTAACACAGCACGACATCATCAAGATTCAAATACAGTTCAACCACAACCTGCGGAAAGCCCTGGGACTTCACAAGTGTTTTCTAACTTTCAAAATCTGGACGGGCTTACGCCCTCAGATTGGGATTTTCTTGAGAGTCTTTAA |
Protein Sequence
|
MQSSSHSKNHSIPVAKTSLPQKKKKSIRRRRVDLPCGCSYYISINCHDHGFTHRGVHHCGSYREWRIYLGNSKSPVFQNFETRQQALPNTARHHQDSNTVQPQPAESPGTSQVFSNFQNLDGLTPSDWDFLESL |
NCBI Accession
|
YP_010084362.1
|
Location
|
1522-2607 |
Protein Name
|
AC1 |
Coding Region
|
ATGGCAGCCCCCAATCGGTTTAAAATAAATGCCAAAAATTATTTTCTCACTTATCCGAAGTGCTCTCTAACTAAAGAAGAAGCACTTTCCCAATTATTAAATATACATACACCCACTTCAAAAAAATTTATTAGAATTTGCAGAGAGCTTCACGAAGATGGGACTCCTCACTTGCATGTGCTCATCCAGTTCGAAGGAAAGTTCCAGTGCAAAAACAATAGATTCTTCGACCTCACATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAGAGCTCAAGCGATGTCAAATCCTACATGGAAAAAGACGGAGACGTCATTGATCATGGAGTTTTCCAAGTCGATGGAAGATCAGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAATTCAGGGTCCAAAGCTCAGGCCCTCAATATACTGAAGGAGAAAGCTCCCAGAGACTTTGTACTTCAATTTCATAATTTAAATTCAAATTTAGATAGATATTTTCAGGATCCACCAGCTCTGTATATTTCTCCTTTTTCATCTTCTTCTTTCGACCAAGTTCCCGAAGAACTTGAAGAGTGGGCTTGCGAAAACATTGTCGATGCCGCTGCGCGGCCAATTAGACCCATAAGTATTGTTATTGAGGGTGATAGTAGTACTGGTAAAACAATGTGGGCCAGGTCATTGGGTTCACATAATTATCTGTGTGGTCATCTGGACCTTAGCCCAAAGATCTACAGCAATGATGCATGGTACAACGTCATTGATGACGTTGATCCCCACTATCTAAAGCACTTTAAAGAATTCATGGGGGCCCAGCGTGACTGGCAAAGCAACACCAAGTACGGAAAGCCAGTCATGATTAAAGGTGGAATTCCCACTATCTTCCTGTGCAATAAAGGTCCAAACAGCAGCTATAAGGAATATCTGGACGAAGAAAAAAATGCAGCACTGAAGCAGTGGGCAATCAAGAATGCAGTCTTCATCACACTCGAAGAACCACTCTATTCCGGTCGCGAAAACATCGCTCCCGCAGAAGAAGAAGAAGAGCATTCGCAGGAGGCGAGTTGA |
Protein Sequence
|
MAAPNRFKINAKNYFLTYPKCSLTKEEALSQLLNIHTPTSKKFIRICRELHEDGTPHLHVLIQFEGKFQCKNNRFFDLTSPTRSAHFHPNIQGAKSSSDVKSYMEKDGDVIDHGVFQVDGRSARGGCQSANDAYAEAINSGSKAQALNILKEKAPRDFVLQFHNLNSNLDRYFQDPPALYISPFSSSSFDQVPEELEEWACENIVDAAARPIRPISIVIEGDSSTGKTMWARSLGSHNYLCGHLDLSPKIYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVMIKGGIPTIFLCNKGPNSSYKEYLDEEKNAALKQWAIKNAVFITLEEPLYSGRENIAPAEEEEEHSQEAS |
NCBI Accession
|
YP_010084363.1
|
Location
|
2157-2450 |
Protein Name
|
AC4 |
Coding Region
|
ATGGGACTCCTCACTTGCATGTGCTCATCCAGTTCGAAGGAAAGTTCCAGTGCAAAAACAATAGATTCTTCGACCTCACATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAGAGCTCAAGCGATGTCAAATCCTACATGGAAAAAGACGGAGACGTCATTGATCATGGAGTTTTCCAAGTCGATGGAAGATCAGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAATTCAGGGTCCAAAGCTCAGGCCCTCAATATACTGA |
Protein Sequence
|
MGLLTCMCSSSSKESSSAKTIDSSTSHPQPGQHISIRTFRELRAQAMSNPTWKKTETSLIMEFSKSMEDQLEEVANLPTTHMPRQSIQGPKLRPSIY |