Tomato leaf curl Joydebpur virus


Basic Information

Genus Begomovirus
NCBI Assembly GCF_000864425.1
Isolate Bangladesh:Gazipur, Joydebpur
Release date 2015/2/13
Submitter Maruthi,M.N., Rekha,A.R., Alam,S.N., Kader,K.A., Cork,A., Colvin,J.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_007723
ACCGGATGGCCGCGATTTTTTTCAAGTGGGCCCCACCACGCACGTGCTGACAAGGACAATTGGACCAATCAGAAATGCCGCTCAAAGCTTAATTGTTTCGTGGTCCCCTATATAAACTTGGGCTCCAAGTAGTGCACTCATACCAATGTGGGATCCGTTAGTAAACGACTTTCCTGAAACCGTTCACGGTTTTAGGTGTATGCTAGCCGTTAAATATCTGCAGCTAGTAGAAAAGACGTATTCTCCAGATACTCTCGGGTACGATTTAATCCGGGATTTAATTTCAGTTATCAGGGCCAGAAATTATGGCGAAGCGACCGGCAGATATAATCATTTCCACGCCCGCCTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCCATATTCCAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAAGCAAAAGCATGGGCGAACAGGCCCATGAACAGGAAGCCCAGGATGTACAGGATGTTCAGAAGCCCAGATGTTCCTAGAGGCTGTGAAGGCCCATGTAAGGTCCAGTCCTTTGAGTCTAGACATGATGTCCAACACATAGGTAAAGTCATGTGTGTTAGTGATGTTACTCGTGGAACTGGGCTGACCCATCGAGTTGGTAAAAGGTTTTGTGTTAAGTCCGTCTATGTACTGGGCAAGATTTGGATGGATGAGAACATCAAGACTAAGAATCACACGAATAGTGTTATGTTTTTCCTTGTTAGAGATCGTAGGCCCGTAGATAAGCCCCAAGACTTTGGTGAGGTGTTTAACATGTTTGATAATGAGCCCAGTACGGCTACCGTGAAGAACGTGCATCGTGATAGGTATCAGGTGCTCAGGAAGTGGCATGCAACTGTGACTGGTGGTCAATATGCATCGAAGGAGCAAGCTCTCGTGAAGAAGTTTATTAGGGTTAATAATTATGTTGTGTATAACCAGCAAGAGGCTGGCAAGTATGAAAACCATACTGAGAATGCATTGATGTTGTACATGGCGTGTACTCATGCCTCTAACCCTGTGTATGCTACTTTGAAGATACGGATCTATTTCTATGATTCCGTAACAAATTAATAAATATTGAATTTTATTATGCTTGAACTTTGTACATAAATTGTTTGCGCTAATACATTCCATAATACATGATCGACTGCTCTAATTACATTGTTTATACTAATTACAGCAAAATTATTTAAAAACTGCAAAACTTGGGTCCTAAAGACCCTTAAGAAATGACCAGTCCGAGGCTGTAAGGTCGTCCAGATTCGGAAGGTTAGAAAACATTTGTGTATCCCCAACGCTTTCCTCAGGTTGTGATTGAACTGTACTTGGACTGTGATGATGTCGTGGTTCATTAGGAATGGCCGGTGGTGGTGCTCGGTTATCTTGAAATAGAGGGGATTTGTTATCTCCCAGATAAACACGCCATTCTCGGCCTGAGCTGCAGTGATGGGTTCCCCTGTGCGTGAATCCATAGTCGTGGCAGCGTAATGCGATGAAGTATGAACAGCCGCAGTCCAGGTCAACGCGACGACGCCTGGTCCCCCTCTTGGCTAGCCTGTGCTGGACTTTGATTGGAACCTGAGTAGAGTGGGCCTTCGAGGGTGATGAAGGTCGCATTCTTCAAAGCCCAATTTTTGAGTGCGCTATTTTTCTCTTCATCCAAGAACTCTTTATAGCTGGAATTGGGTCCTGGATTGCAGAGGAAGATAGCGGGAATTCCACCTTTAATTTGAACTGGCTTTCCGTATTTTGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGTTTTAGATAATGAGGATCAACGTCATCAATGACGTTGTACCAGGCGTCATTACTGTACACCTTTGGGCTAAGGTCGAGATGACCACACAAATAATTGTGTGGACCTAGTGACCTCGCCCACACCGTCTTGCCCGTTCGACTATCACCCTGTATGACTACACTTACGGGTCGTAATGGCCGCGCAGCGGCAGACACCACATTCTCGGTAGCCCATTCTTCAAGTTCCTCGGGAACTTGATCAAAAGAAGAGGAAGAAAAAGGAGAAACATAAACCTCCGGTGGAGGTGTAAAAATCCTATCTAAATTAGCATTTAAATTATGAAACTGTAAAACATAATCTTTGGGAGCTTTCTCCCTTAAAATATTGAGGGCCGCAGCTTTGGACCATGAATTGATTGCCTCGGCATATGCGTCGTTGGCAGATTGCTGACCTCCTCTAGCTGATCTGCCATCGATCTGGAAAACTCCAAAATCAATGAAGTCTCCGTCTTTCTCCACGTAGGCTTTGACATCTGTAGAGCTCTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCGGGATGGGGAAACGAGGTCGAAGAATCGGTGATTTTTGCATTGGAATTTTCCCTCAAATTGGAGGAGCACGTGTAGATGAGGTTCCCCATTTTCGTGTAGTTCTCTGCAAACCCTAATAAATAATTTATTTACTGGAGTTTCTAAATGTTGTAATTGGGAAAGTGCCTCTTCTTTAGTAAGAGAGCACTTGGGATATGTGAGGAAATAATTTTTGGCATTTATTCTGAATTTATTTGGAGGAGCCATTGACTTGGTCAATCGGTGTCCAGCAAACTTGGCTATGCAATTGGTGTCTGGTGTCTTATTTATATGTAGACACCGAATGGCATATGTGTAATTTTTGAAATAACTTTAATTCAAATTTCAAAATGCCCAAAGCGGCCATCCGTCTAATATT

Gene Information

NCBI Accession YP_459901.1
Location 146-502
Gene Name AV2
Protein Name AV2 protein
Coding Region ATGTGGGATCCGTTAGTAAACGACTTTCCTGAAACCGTTCACGGTTTTAGGTGTATGCTAGCCGTTAAATATCTGCAGCTAGTAGAAAAGACGTATTCTCCAGATACTCTCGGGTACGATTTAATCCGGGATTTAATTTCAGTTATCAGGGCCAGAAATTATGGCGAAGCGACCGGCAGATATAATCATTTCCACGCCCGCCTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCCATATTCCAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAAGCAAAAGCATGGGCGAACAGGCCCATGAACAGGAAGCCCAGGATGTACAGGATGTTCAGAAGCCCAGATGTTCCTAG
Protein Sequence MWDPLVNDFPETVHGFRCMLAVKYLQLVEKTYSPDTLGYDLIRDLISVIRARNYGEATGRYNHFHARLEGTPPSQLRQPIFQPCCCPHCPRHQSKSMGEQAHEQEAQDVQDVQKPRCS

NCBI Accession YP_459902.1
Location 306-1076
Gene Name AV1
Protein Name coat protein
Coding Region ATGGCGAAGCGACCGGCAGATATAATCATTTCCACGCCCGCCTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCCATATTCCAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAAGCAAAAGCATGGGCGAACAGGCCCATGAACAGGAAGCCCAGGATGTACAGGATGTTCAGAAGCCCAGATGTTCCTAGAGGCTGTGAAGGCCCATGTAAGGTCCAGTCCTTTGAGTCTAGACATGATGTCCAACACATAGGTAAAGTCATGTGTGTTAGTGATGTTACTCGTGGAACTGGGCTGACCCATCGAGTTGGTAAAAGGTTTTGTGTTAAGTCCGTCTATGTACTGGGCAAGATTTGGATGGATGAGAACATCAAGACTAAGAATCACACGAATAGTGTTATGTTTTTCCTTGTTAGAGATCGTAGGCCCGTAGATAAGCCCCAAGACTTTGGTGAGGTGTTTAACATGTTTGATAATGAGCCCAGTACGGCTACCGTGAAGAACGTGCATCGTGATAGGTATCAGGTGCTCAGGAAGTGGCATGCAACTGTGACTGGTGGTCAATATGCATCGAAGGAGCAAGCTCTCGTGAAGAAGTTTATTAGGGTTAATAATTATGTTGTGTATAACCAGCAAGAGGCTGGCAAGTATGAAAACCATACTGAGAATGCATTGATGTTGTACATGGCGTGTACTCATGCCTCTAACCCTGTGTATGCTACTTTGAAGATACGGATCTATTTCTATGATTCCGTAACAAATTAA
Protein Sequence MAKRPADIIISTPASKVRRRLNFDSPYSSRAAAPIVRVTKAKAWANRPMNRKPRMYRMFRSPDVPRGCEGPCKVQSFESRHDVQHIGKVMCVSDVTRGTGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEPSTATVKNVHRDRYQVLRKWHATVTGGQYASKEQALVKKFIRVNNYVVYNQQEAGKYENHTENALMLYMACTHASNPVYATLKIRIYFYDSVTN

NCBI Accession YP_459903.1
Location 1073-1477
Gene Name AC3
Protein Name replication enhancer
Coding Region ATGGATTCACGCACAGGGGAACCCATCACTGCAGCTCAGGCCGAGAATGGCGTGTTTATCTGGGAGATAACAAATCCCCTCTATTTCAAGATAACCGAGCACCACCACCGGCCATTCCTAATGAACCACGACATCATCACAGTCCAAGTACAGTTCAATCACAACCTGAGGAAAGCGTTGGGGATACACAAATGTTTTCTAACCTTCCGAATCTGGACGACCTTACAGCCTCGGACTGGTCATTTCTTAAGGGTCTTTAGGACCCAAGTTTTGCAGTTTTTAAATAATTTTGCTGTAATTAGTATAAACAATGTAATTAGAGCAGTCGATCATGTATTATGGAATGTATTAGCGCAAACAATTTATGTACAAAGTTCAAGCATAATAAAATTCAATATTTATTAA
Protein Sequence MDSRTGEPITAAQAENGVFIWEITNPLYFKITEHHHRPFLMNHDIITVQVQFNHNLRKALGIHKCFLTFRIWTTLQPRTGHFLRVFRTQVLQFLNNFAVISINNVIRAVDHVLWNVLAQTIYVQSSSIIKFNIY

NCBI Accession YP_459904.1
Location 1218-1622
Gene Name AC2
Protein Name transcriptional activator protein (TrAP)
Coding Region ATGCGACCTTCATCACCCTCGAAGGCCCACTCTACTCAGGTTCCAATCAAAGTCCAGCACAGGCTAGCCAAGAGGGGGACCAGGCGTCGTCGCGTTGACCTGGACTGCGGCTGTTCATACTTCATCGCATTACGCTGCCACGACTATGGATTCACGCACAGGGGAACCCATCACTGCAGCTCAGGCCGAGAATGGCGTGTTTATCTGGGAGATAACAAATCCCCTCTATTTCAAGATAACCGAGCACCACCACCGGCCATTCCTAATGAACCACGACATCATCACAGTCCAAGTACAGTTCAATCACAACCTGAGGAAAGCGTTGGGGATACACAAATGTTTTCTAACCTTCCGAATCTGGACGACCTTACAGCCTCGGACTGGTCATTTCTTAAGGGTCTTTAG
Protein Sequence MRPSSPSKAHSTQVPIKVQHRLAKRGTRRRRVDLDCGCSYFIALRCHDYGFTHRGTHHCSSGREWRVYLGDNKSPLFQDNRAPPPAIPNEPRHHHSPSTVQSQPEESVGDTQMFSNLPNLDDLTASDWSFLKGL

NCBI Accession YP_459905.1
Location 1525-2610
Gene Name AC1
Protein Name replication protein
Coding Region ATGGCTCCTCCAAATAAATTCAGAATAAATGCCAAAAATTATTTCCTCACATATCCCAAGTGCTCTCTTACTAAAGAAGAGGCACTTTCCCAATTACAACATTTAGAAACTCCAGTAAATAAATTATTTATTAGGGTTTGCAGAGAACTACACGAAAATGGGGAACCTCATCTACACGTGCTCCTCCAATTTGAGGGAAAATTCCAATGCAAAAATCACCGATTCTTCGACCTCGTTTCCCCATCCCGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAGAGCTCTACAGATGTCAAAGCCTACGTGGAGAAAGACGGAGACTTCATTGATTTTGGAGTTTTCCAGATCGATGGCAGATCAGCTAGAGGAGGTCAGCAATCTGCCAACGACGCATATGCCGAGGCAATCAATTCATGGTCCAAAGCTGCGGCCCTCAATATTTTAAGGGAGAAAGCTCCCAAAGATTATGTTTTACAGTTTCATAATTTAAATGCTAATTTAGATAGGATTTTTACACCTCCACCGGAGGTTTATGTTTCTCCTTTTTCTTCCTCTTCTTTTGATCAAGTTCCCGAGGAACTTGAAGAATGGGCTACCGAGAATGTGGTGTCTGCCGCTGCGCGGCCATTACGACCCGTAAGTGTAGTCATACAGGGTGATAGTCGAACGGGCAAGACGGTGTGGGCGAGGTCACTAGGTCCACACAATTATTTGTGTGGTCATCTCGACCTTAGCCCAAAGGTGTACAGTAATGACGCCTGGTACAACGTCATTGATGACGTTGATCCTCATTATCTAAAACACTTTAAAGAATTCATGGGGGCCCAAAGGGACTGGCAATCAAATACAAAATACGGAAAGCCAGTTCAAATTAAAGGTGGAATTCCCGCTATCTTCCTCTGCAATCCAGGACCCAATTCCAGCTATAAAGAGTTCTTGGATGAAGAGAAAAATAGCGCACTCAAAAATTGGGCTTTGAAGAATGCGACCTTCATCACCCTCGAAGGCCCACTCTACTCAGGTTCCAATCAAAGTCCAGCACAGGCTAGCCAAGAGGGGGACCAGGCGTCGTCGCGTTGA
Protein Sequence MAPPNKFRINAKNYFLTYPKCSLTKEEALSQLQHLETPVNKLFIRVCRELHENGEPHLHVLLQFEGKFQCKNHRFFDLVSPSRSAHFHPNIQGAKSSTDVKAYVEKDGDFIDFGVFQIDGRSARGGQQSANDAYAEAINSWSKAAALNILREKAPKDYVLQFHNLNANLDRIFTPPPEVYVSPFSSSSFDQVPEELEEWATENVVSAAARPLRPVSVVIQGDSRTGKTVWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPAIFLCNPGPNSSYKEFLDEEKNSALKNWALKNATFITLEGPLYSGSNQSPAQASQEGDQASSR

NCBI Accession YP_459906.1
Location 2160-2453
Gene Name AC4
Protein Name AC4 protein
Coding Region ATGGGGAACCTCATCTACACGTGCTCCTCCAATTTGAGGGAAAATTCCAATGCAAAAATCACCGATTCTTCGACCTCGTTTCCCCATCCCGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAGAGCTCTACAGATGTCAAAGCCTACGTGGAGAAAGACGGAGACTTCATTGATTTTGGAGTTTTCCAGATCGATGGCAGATCAGCTAGAGGAGGTCAGCAATCTGCCAACGACGCATATGCCGAGGCAATCAATTCATGGTCCAAAGCTGCGGCCCTCAATATTTTAA
Protein Sequence MGNLIYTCSSNLRENSNAKITDSSTSFPHPGQHISIRTFRELRALQMSKPTWRKTETSLILEFSRSMADQLEEVSNLPTTHMPRQSIHGPKLRPSIF