Tomato leaf curl Hanoi virus
Basic Information
| Genus |
Begomovirus
|
| NCBI Assembly |
GCF_000892255.1 |
| Isolate |
Viet Nam |
| Release date |
2015/2/22 |
| Submitter |
Ha,C.V., Le,H.V., Tran,T.N. |
| Host |
|
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGATTTTTTTTAAAGTGGTCCCCGCATGCGCTCCTGCCCAATCCTATCCACTCCTCAAAGCTAAATTATTAATTTGTCTCCTATATAACTTGGTCCCCAAGTAGTCACGTCAAACATGTGGGATCCTTTACTAAACGAGTTTCCCGAAACGGTACATGGTTTCAGGTGTATGCTAGCAATTAAGTATTTGCAATTGGTAGAAAATACGTACTCTCCAGATACATTAGGGCACGATTTAATTCGCGATTTAATTTTAGTTATTCGTGCTAGAGATTATGTCGAAGCGACCCGCCGATATAGTCATTTCCACTCCCGCATCCAAGGTGCGTCGCCGGCTGAATTTCGACAGCCCGTATGTCAGCCGTGCTGCTGCCCCCACTGTCCTCGTCACAAACAAAAGGAGGTCATGGGTGAATCGGCCCATGTACCGAAAGCCCAGGATGTACCGAATGTACAAAAGCCCTGATGTTCCTCGTGGTTGTGAGGGACCATGTAAGGTCCAGTCGTATGAACAGCGTCATGATGTAGCTCACGTAGGTAAGGTCATTTGTGTGTCGGATGTTACTCGTGGTAATGGTTTGACGCATCGAGTCGGTAAGAGGTTTTGTGTTAAATCTGTCTATGTTTTGGGTAAGATATGGATGGATGAGAACATTAAGACCAAGAATCATACCAATACAGTTATGTTTTTTCTAGTTCGTGATAGGAGACCTTTTGGCACTCCCCAGGATTTTGGCCAGGTGTTTAACATGTATGATAATGAGCCGAGTACAGCTACTGTGAAGAATGACAACAGGGATCGTTTTCAAGTTCTCCGCCGTATTCAAGCCACTGTTACTGGTGGCCAGTATGCAAGTAAGGAGCAAGCAATAGTCAGGAAATTCATGAAGGTGAATAACCATGTAACTTATAACCATCAAGAGGCTGCGAAGTATGATAACCACACAGAAAATGCTTTGTTATTGTATATGGCATGTACTCATGCTAGTAATCCAGTGTATGCTACTTTGAAGATCAGGATCTATTTCTACGATTCTGTTCAGAATTAATAAAGATTAAATTTTATTATACTTGAATCTTCTGTATCAATTGTGCCTTCTAATACATTGTACAATACATGAGACATTGCTCTAATTACATTATTGATGCTAATAACTCCTAAATTGTCTAAATACTTAATACATTGATATTTAAATACTCTTAAGAAACGCGAGGTCTGAGGATGTAAACGAGTCCAAACTCGGCAGATTAGAAAACATTGGTGTATCCCCAATGCTTTCCTCAGGTTGTAATTGAATTGGACTTGTATTGTGATGATGTCGTGGTTCGTCAGAAATGGTCTCTCGTCGTGGCTGGTTATCTTGAAATATAGGGGATTTTTGACCGTCCAGATATATACGCCACTCTCTGCTTGAGCTGCAGTGATAGCTTCCCCTGTGCGAGAATCCATGATTGTGACAGCCTAGTGCAATGAAGTATGAACATCCACAAGGGAGATCAACTCTCCGTCTCCTCGTAGCTTTCTTGGCGTTGCGGTGTTGCACCTTGATAGGAACCGGAGTAGAGTGTGCCTTGGAGGGTGACGAAGATCGCATTCTTTATTGCCCAGTTTTTAAGTGCGCTGTTTTTTTCTTCGTCCAAGAATTCTTTATAGCTGGAATTGGGGCCAGGATTGCAGAGGAAGATAGTGGGAATACCGCCTTTAATTTGAACAGGTTTCCCGTACTTCGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGGTAATGCGGATCCACGTCATCGATGACGTTGAACCAGGCATCATTACTGTACACCTTTGGACTCAAATCTAAATGACCACATAAATAATTGTGTGGACCCAATGATCGGGCCCACATCGTCTTCCCCGTCCTGCTATCACCCTCTATGACTATACTTACTGGTCTCAAAGGCCGCGCAGCGGCACTGACAACGTTTTCTATAGCCCATTCATCAAGTTCTTCAGGAACCTGGTCAAAAGAAGAAGAAGAAAATGGAGAAATATATTCCTCTATTGGAGGAGTAAAAATCCTATCTAAATTACTATTTAAATTATGGAATTGTAAAACAAAATCTTTAGGAGCTTTCTCCCTTAATATATTGAGGGCCGATGCTTTGGACCCTGAATTGATTGCCTCGGCATATGCGTCGTTGGCAGATTGGCAACCTCCTCTAGCCGATCTTCCATCGATCTGGAAAACTCCATGATCAAGCACGTCTCCGTCTTTTTCCATGTATGTTTTAACATCTGTTGAGCTTTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTTGTTTGGGATATGAGGTCGAAGAATCTTTGATTTCTGCATTGGAACTTTCCTTCGAATTGGATGAGGACATGCAAGTGAGGAGACCCATCTTCGTGTAATTCCCTGCAGATTCGAATGAATAATTTATTTGTTGGGGTTTCTAAGGCTTTAATTTGGGAAAGTGCTTCTTCTTTGGTGAGAGAACAGTGTGGGTATGTGAGGAAATAGTTTTTGGCATTTATTCTGAATTTATTGGGAGGAGCCATTGACTGGTCAATCGGTGTCTCTCAAACTTGGCTATGCAATTGGTGTCTGGGGTCTTATTTATATGTGGACACCAAATGGCATTAATGTAATTATGATTATGAAATTCAAAATTCAAATTCCAAAAGCGGCCATCCGTATAATATT
Gene Information
|
NCBI Accession
|
YP_004222839.1
|
|
Location
|
128-478 |
|
Gene Name
|
AV2 |
|
Protein Name
|
AV2 protein |
|
Coding Region
|
ATGTGGGATCCTTTACTAAACGAGTTTCCCGAAACGGTACATGGTTTCAGGTGTATGCTAGCAATTAAGTATTTGCAATTGGTAGAAAATACGTACTCTCCAGATACATTAGGGCACGATTTAATTCGCGATTTAATTTTAGTTATTCGTGCTAGAGATTATGTCGAAGCGACCCGCCGATATAGTCATTTCCACTCCCGCATCCAAGGTGCGTCGCCGGCTGAATTTCGACAGCCCGTATGTCAGCCGTGCTGCTGCCCCCACTGTCCTCGTCACAAACAAAAGGAGGTCATGGGTGAATCGGCCCATGTACCGAAAGCCCAGGATGTACCGAATGTACAAAAGCCCTGA |
|
Protein Sequence
|
MWDPLLNEFPETVHGFRCMLAIKYLQLVENTYSPDTLGHDLIRDLILVIRARDYVEATRRYSHFHSRIQGASPAEFRQPVCQPCCCPHCPRHKQKEVMGESAHVPKAQDVPNVQKP |
|
NCBI Accession
|
YP_004222840.1
|
|
Location
|
288-1061 |
|
Gene Name
|
AV1 |
|
Protein Name
|
CP protein |
|
Coding Region
|
ATGTCGAAGCGACCCGCCGATATAGTCATTTCCACTCCCGCATCCAAGGTGCGTCGCCGGCTGAATTTCGACAGCCCGTATGTCAGCCGTGCTGCTGCCCCCACTGTCCTCGTCACAAACAAAAGGAGGTCATGGGTGAATCGGCCCATGTACCGAAAGCCCAGGATGTACCGAATGTACAAAAGCCCTGATGTTCCTCGTGGTTGTGAGGGACCATGTAAGGTCCAGTCGTATGAACAGCGTCATGATGTAGCTCACGTAGGTAAGGTCATTTGTGTGTCGGATGTTACTCGTGGTAATGGTTTGACGCATCGAGTCGGTAAGAGGTTTTGTGTTAAATCTGTCTATGTTTTGGGTAAGATATGGATGGATGAGAACATTAAGACCAAGAATCATACCAATACAGTTATGTTTTTTCTAGTTCGTGATAGGAGACCTTTTGGCACTCCCCAGGATTTTGGCCAGGTGTTTAACATGTATGATAATGAGCCGAGTACAGCTACTGTGAAGAATGACAACAGGGATCGTTTTCAAGTTCTCCGCCGTATTCAAGCCACTGTTACTGGTGGCCAGTATGCAAGTAAGGAGCAAGCAATAGTCAGGAAATTCATGAAGGTGAATAACCATGTAACTTATAACCATCAAGAGGCTGCGAAGTATGATAACCACACAGAAAATGCTTTGTTATTGTATATGGCATGTACTCATGCTAGTAATCCAGTGTATGCTACTTTGAAGATCAGGATCTATTTCTACGATTCTGTTCAGAATTAA |
|
Protein Sequence
|
MSKRPADIVISTPASKVRRRLNFDSPYVSRAAAPTVLVTNKRRSWVNRPMYRKPRMYRMYKSPDVPRGCEGPCKVQSYEQRHDVAHVGKVICVSDVTRGNGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNTVMFFLVRDRRPFGTPQDFGQVFNMYDNEPSTATVKNDNRDRFQVLRRIQATVTGGQYASKEQAIVRKFMKVNNHVTYNHQEAAKYDNHTENALLLYMACTHASNPVYATLKIRIYFYDSVQN |
|
NCBI Accession
|
YP_004222841.1
|
|
Location
|
1058-1462 |
|
Gene Name
|
AC3 |
|
Protein Name
|
REn protein |
|
Coding Region
|
ATGGATTCTCGCACAGGGGAAGCTATCACTGCAGCTCAAGCAGAGAGTGGCGTATATATCTGGACGGTCAAAAATCCCCTATATTTCAAGATAACCAGCCACGACGAGAGACCATTTCTGACGAACCACGACATCATCACAATACAAGTCCAATTCAATTACAACCTGAGGAAAGCATTGGGGATACACCAATGTTTTCTAATCTGCCGAGTTTGGACTCGTTTACATCCTCAGACCTCGCGTTTCTTAAGAGTATTTAAATATCAATGTATTAAGTATTTAGACAATTTAGGAGTTATTAGCATCAATAATGTAATTAGAGCAATGTCTCATGTATTGTACAATGTATTAGAAGGCACAATTGATACAGAAGATTCAAGTATAATAAAATTTAATCTTTATTAA |
|
Protein Sequence
|
MDSRTGEAITAAQAESGVYIWTVKNPLYFKITSHDERPFLTNHDIITIQVQFNYNLRKALGIHQCFLICRVWTRLHPQTSRFLRVFKYQCIKYLDNLGVISINNVIRAMSHVLYNVLEGTIDTEDSSIIKFNLY |
|
NCBI Accession
|
YP_004222842.1
|
|
Location
|
1203-1607 |
|
Gene Name
|
AC2 |
|
Protein Name
|
TrAP protein |
|
Coding Region
|
ATGCGATCTTCGTCACCCTCCAAGGCACACTCTACTCCGGTTCCTATCAAGGTGCAACACCGCAACGCCAAGAAAGCTACGAGGAGACGGAGAGTTGATCTCCCTTGTGGATGTTCATACTTCATTGCACTAGGCTGTCACAATCATGGATTCTCGCACAGGGGAAGCTATCACTGCAGCTCAAGCAGAGAGTGGCGTATATATCTGGACGGTCAAAAATCCCCTATATTTCAAGATAACCAGCCACGACGAGAGACCATTTCTGACGAACCACGACATCATCACAATACAAGTCCAATTCAATTACAACCTGAGGAAAGCATTGGGGATACACCAATGTTTTCTAATCTGCCGAGTTTGGACTCGTTTACATCCTCAGACCTCGCGTTTCTTAAGAGTATTTAA |
|
Protein Sequence
|
MRSSSPSKAHSTPVPIKVQHRNAKKATRRRRVDLPCGCSYFIALGCHNHGFSHRGSYHCSSSREWRIYLDGQKSPIFQDNQPRRETISDEPRHHHNTSPIQLQPEESIGDTPMFSNLPSLDSFTSSDLAFLKSI |
|
NCBI Accession
|
YP_004222843.1
|
|
Location
|
1510-2595 |
|
Gene Name
|
AC1 |
|
Protein Name
|
Rep protein |
|
Coding Region
|
ATGGCTCCTCCCAATAAATTCAGAATAAATGCCAAAAACTATTTCCTCACATACCCACACTGTTCTCTCACCAAAGAAGAAGCACTTTCCCAAATTAAAGCCTTAGAAACCCCAACAAATAAATTATTCATTCGAATCTGCAGGGAATTACACGAAGATGGGTCTCCTCACTTGCATGTCCTCATCCAATTCGAAGGAAAGTTCCAATGCAGAAATCAAAGATTCTTCGACCTCATATCCCAAACAAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAAAGCTCAACAGATGTTAAAACATACATGGAAAAAGACGGAGACGTGCTTGATCATGGAGTTTTCCAGATCGATGGAAGATCGGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAATTCAGGGTCCAAAGCATCGGCCCTCAATATATTAAGGGAGAAAGCTCCTAAAGATTTTGTTTTACAATTCCATAATTTAAATAGTAATTTAGATAGGATTTTTACTCCTCCAATAGAGGAATATATTTCTCCATTTTCTTCTTCTTCTTTTGACCAGGTTCCTGAAGAACTTGATGAATGGGCTATAGAAAACGTTGTCAGTGCCGCTGCGCGGCCTTTGAGACCAGTAAGTATAGTCATAGAGGGTGATAGCAGGACGGGGAAGACGATGTGGGCCCGATCATTGGGTCCACACAATTATTTATGTGGTCATTTAGATTTGAGTCCAAAGGTGTACAGTAATGATGCCTGGTTCAACGTCATCGATGACGTGGATCCGCATTACCTAAAGCACTTTAAAGAATTCATGGGGGCCCAAAGGGACTGGCAAAGCAACACGAAGTACGGGAAACCTGTTCAAATTAAAGGCGGTATTCCCACTATCTTCCTCTGCAATCCTGGCCCCAATTCCAGCTATAAAGAATTCTTGGACGAAGAAAAAAACAGCGCACTTAAAAACTGGGCAATAAAGAATGCGATCTTCGTCACCCTCCAAGGCACACTCTACTCCGGTTCCTATCAAGGTGCAACACCGCAACGCCAAGAAAGCTACGAGGAGACGGAGAGTTGA |
|
Protein Sequence
|
MAPPNKFRINAKNYFLTYPHCSLTKEEALSQIKALETPTNKLFIRICRELHEDGSPHLHVLIQFEGKFQCRNQRFFDLISQTRSAHFHPNIQGAKSSTDVKTYMEKDGDVLDHGVFQIDGRSARGGCQSANDAYAEAINSGSKASALNILREKAPKDFVLQFHNLNSNLDRIFTPPIEEYISPFSSSSFDQVPEELDEWAIENVVSAAARPLRPVSIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWFNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNSALKNWAIKNAIFVTLQGTLYSGSYQGATPQRQESYEETES |
|
NCBI Accession
|
YP_004222844.1
|
|
Location
|
2145-2438 |
|
Gene Name
|
AC4 |
|
Protein Name
|
AC4 protein |
|
Coding Region
|
ATGGGTCTCCTCACTTGCATGTCCTCATCCAATTCGAAGGAAAGTTCCAATGCAGAAATCAAAGATTCTTCGACCTCATATCCCAAACAAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAAAGCTCAACAGATGTTAAAACATACATGGAAAAAGACGGAGACGTGCTTGATCATGGAGTTTTCCAGATCGATGGAAGATCGGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAATTCAGGGTCCAAAGCATCGGCCCTCAATATATTAA |
|
Protein Sequence
|
MGLLTCMSSSNSKESSNAEIKDSSTSYPKQGQHISIRTFRELKAQQMLKHTWKKTETCLIMEFSRSMEDRLEEVANLPTTHMPRQSIQGPKHRPSIY |