Tomato leaf curl Hainan virus


Basic Information

Genus Begomovirus
NCBI Assembly GCF_000885835.1
Isolate China:Hainan province
Release date 2015/2/22
Submitter Zhang,H., Hu,G., Zhou,X., Zhou,X.P.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_013102
ACCGGATGGCCGCGATTTTTTTTAAAATGGTCCCCACCACTAACAAATGTGCTCCACTTAGAACGCTCCCTCAAATCCTATTTAATTCAAATCCATTATATATACTTGGTCCCCAAGTACTCACGTCAAACATGTGGGATCCTTTACTAAACGAGTTTCCCGAAACCGTACACGGTTTTAGGTGTATGTTAGCCATTAAATATTTGCAATTAGTAGAAAATACATACTCTCCTGATACATTAGGGTACGATTTGATTCGTGATTTAATTTCAGTTATTCGTGCTAAGGACTATGTCGAAGCGTCCCGCAGATATAGTCATTTCCACTCCCGCATCCAAGGTGCGTCGCCGGCTGAATTTCGACAGCCCGTATGCCAGCCGTGCTGCTGCCCCCACTGTCCTCGTCACAAACAAAAGGAGGTCATGGGTCAATCGGCCCATGTACCGAAAGCCCAGGATGTACAGGATGTACAAAAGCCCTGATGTTCCTCGTGGTTGTGAAGGTCCATGTAAGGTTCAGTCGTATGAACAGCGTCATGATGTAGCGCACGTAGGTAAGGTCATTTGTGTGTCGGATGTTACTCGTGGTAACGGGTTGACTCATCGTGTGGGAAAGAGGTTTTGTGTTAAGTCTGTTTATGTTTTGGGCAAGATATGGATGGATGAGAACATTAAGACCAAGAATCACACTAATACTGTGATGTTTTTTTTAGTTCGTGATAGGAGACCATTTGGGACTCCACAGGATTTTGGTCAGGTTTTTAATATGTATGATAATGAGCCTAGTACTGCTACTGTGAAGAACGATAACAGAGATCGCTTTCAAGTTCTACGCCGTTTTCAGGCGACTGTTACTGATGGTCAGTATGCAAGTAAGGAGCAGGCGTTGGTTAGGAAATTTATGAAGGTTAACAACCATGTGACCTATAACCATCAAGAAGCCGCGAAGTATGACAATCACACAGAGAATGCTCTTTTGTTGTATATGGCATGTACTCATGCTAGTAATCCTGTGTATGCTACTTTGAAAATCAGAATCTATTTCTATGATTCTGTTCAGAATTAATAAAGATTGAATTTTATTATATTTGAATGTGTTACATATTCTGTTTTTTCCAATACATCCCATAATACATGATCACATGCTCTAATTACATTGTTAATACTAATTACACCCAAATTATCTAAATATTTCATACATTGAACCCTAAATACTCTTAAGAAACGCCAGGTCTGAGGACGTAAATGAGTCCAGATCTGGAAGATTAGAAAACATTGGTGTATTCCCAACGCTTTCCTCAGGTTGTAATTGAATTGGACTTGTATTGTGATGATGTCGTGGTTCATCAGAAATGGTCTCTCGTCGTGGCTGATTATCTTGAAATATAGGGGATTTTTGACCGTCCAGATATATACGCCACTCTCTGCTTGAGCTGCAGTGATAGCTTCCCCTGTGCGAGAATCCATGATTGTGACAGCCTAGTGCAATGAAGTATGAACAGCCACAAGGGAGATCAACTCTCCGTCTCCTCGTTGCTTTCTTGGCGTTGCGGTGTTGCACCTTGATAGGAACCTGAGTAGAGTGCGCTTTGGAGGGTGACGAAGATCGCATTTTTTATTGCCCAGTGTTTGAGTGCGCTGTTTTTCTCTTCGTCCAAGAATTCTTTATAGCTTGAATTGGGGCCGGGATTGCAGAGGAAGATAGTGGGAATTCCCCCTTTAATTTGAACGGGTTTTCCGTACTTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAATGCTTTAGGTAGTGCGGATCAACGTCATCAATGACGTTGTACCAGGCATCATTACTGTACACCTTTGGACTCAAATCAAGATGACCACACAGATAATTGTGTGGACCCAATGATCGAGCCCACATCGTCTTCCCCGTCCGACTATCGCCCTCTATGACTATACTTATTGGTCGTAATGGCCGCGCAGCGGCACTGACAACGTTCTCTGCAGCCCACTCTTCGAGTTCTTCTGGAACTCGATCAAACGAAGAGGAAGAAAAAGGAGAAACGTAAACCTCCATTGGAGGAGTAAAAATCCTATCTAAATTACTATTTAAATTATGAAACTGTAAAACAAAATCTTTGGGAGCTTTCTCCCTTAATATATTGAGGGCCGTAGCTTTGGACCCTGAATTGATTGCCTCGGCATATGCGTCGTTTGCAGACTGGCAACCTCCTCTAGCCGATCTTCCATCGATCTGGAAAACTCCATGATCAAGCACGTCTCCGTCTTTGTCCATGTAGGCTTTGACGTCTGTTGAGCTTTTAGCGCTCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGATACGAGATCGAAGAATCTGTTGTTTTGGCATTTGAATTTTCCTTCGAACTGGATGAGGACATGCAGGTGAGGAGACCCATCTTCGTGTAATTCCCTGCAGATTCGAATGAATAATTTATTGGTTGGTGTCGTTAGGGCTAAAAATTGGGAAAGTGCTTCTTCTTTGCTTAGTGAGCAATGTGGGTATGTGAGGAAATAGTTTTTGGCATTTATTAGAAATTTTTTGGGCGGAGGCATGTTGACTTGGTCAATCGGGTCCTCTCAAACTTAGCTATGCAATCGGGGAATGGGTCCTTATTTATATGTGAGGACCTAAATGGCACAATTGTAAATTACCAAAAGAAATTCAAAATTCAAATTGGTAAAGCGGCCATCCGTATAATATT

Gene Information

NCBI Accession YP_003104746.1
Location 186-482
Gene Name AV2
Protein Name AV2 protein
Coding Region ATGTTAGCCATTAAATATTTGCAATTAGTAGAAAATACATACTCTCCTGATACATTAGGGTACGATTTGATTCGTGATTTAATTTCAGTTATTCGTGCTAAGGACTATGTCGAAGCGTCCCGCAGATATAGTCATTTCCACTCCCGCATCCAAGGTGCGTCGCCGGCTGAATTTCGACAGCCCGTATGCCAGCCGTGCTGCTGCCCCCACTGTCCTCGTCACAAACAAAAGGAGGTCATGGGTCAATCGGCCCATGTACCGAAAGCCCAGGATGTACAGGATGTACAAAAGCCCTGA
Protein Sequence MLAIKYLQLVENTYSPDTLGYDLIRDLISVIRAKDYVEASRRYSHFHSRIQGASPAEFRQPVCQPCCCPHCPRHKQKEVMGQSAHVPKAQDVQDVQKP

NCBI Accession YP_003104747.1
Location 292-1065
Gene Name AV1
Protein Name coat protein
Coding Region ATGTCGAAGCGTCCCGCAGATATAGTCATTTCCACTCCCGCATCCAAGGTGCGTCGCCGGCTGAATTTCGACAGCCCGTATGCCAGCCGTGCTGCTGCCCCCACTGTCCTCGTCACAAACAAAAGGAGGTCATGGGTCAATCGGCCCATGTACCGAAAGCCCAGGATGTACAGGATGTACAAAAGCCCTGATGTTCCTCGTGGTTGTGAAGGTCCATGTAAGGTTCAGTCGTATGAACAGCGTCATGATGTAGCGCACGTAGGTAAGGTCATTTGTGTGTCGGATGTTACTCGTGGTAACGGGTTGACTCATCGTGTGGGAAAGAGGTTTTGTGTTAAGTCTGTTTATGTTTTGGGCAAGATATGGATGGATGAGAACATTAAGACCAAGAATCACACTAATACTGTGATGTTTTTTTTAGTTCGTGATAGGAGACCATTTGGGACTCCACAGGATTTTGGTCAGGTTTTTAATATGTATGATAATGAGCCTAGTACTGCTACTGTGAAGAACGATAACAGAGATCGCTTTCAAGTTCTACGCCGTTTTCAGGCGACTGTTACTGATGGTCAGTATGCAAGTAAGGAGCAGGCGTTGGTTAGGAAATTTATGAAGGTTAACAACCATGTGACCTATAACCATCAAGAAGCCGCGAAGTATGACAATCACACAGAGAATGCTCTTTTGTTGTATATGGCATGTACTCATGCTAGTAATCCTGTGTATGCTACTTTGAAAATCAGAATCTATTTCTATGATTCTGTTCAGAATTAA
Protein Sequence MSKRPADIVISTPASKVRRRLNFDSPYASRAAAPTVLVTNKRRSWVNRPMYRKPRMYRMYKSPDVPRGCEGPCKVQSYEQRHDVAHVGKVICVSDVTRGNGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNTVMFFLVRDRRPFGTPQDFGQVFNMYDNEPSTATVKNDNRDRFQVLRRFQATVTDGQYASKEQALVRKFMKVNNHVTYNHQEAAKYDNHTENALLLYMACTHASNPVYATLKIRIYFYDSVQN

NCBI Accession YP_003104748.1
Location 1062-1466
Gene Name AC3
Protein Name AC3 protein
Coding Region ATGGATTCTCGCACAGGGGAAGCTATCACTGCAGCTCAAGCAGAGAGTGGCGTATATATCTGGACGGTCAAAAATCCCCTATATTTCAAGATAATCAGCCACGACGAGAGACCATTTCTGATGAACCACGACATCATCACAATACAAGTCCAATTCAATTACAACCTGAGGAAAGCGTTGGGAATACACCAATGTTTTCTAATCTTCCAGATCTGGACTCATTTACGTCCTCAGACCTGGCGTTTCTTAAGAGTATTTAGGGTTCAATGTATGAAATATTTAGATAATTTGGGTGTAATTAGTATTAACAATGTAATTAGAGCATGTGATCATGTATTATGGGATGTATTGGAAAAAACAGAATATGTAACACATTCAAATATAATAAAATTCAATCTTTATTAA
Protein Sequence MDSRTGEAITAAQAESGVYIWTVKNPLYFKIISHDERPFLMNHDIITIQVQFNYNLRKALGIHQCFLIFQIWTHLRPQTWRFLRVFRVQCMKYLDNLGVISINNVIRACDHVLWDVLEKTEYVTHSNIIKFNLY

NCBI Accession YP_003104749.1
Location 1207-1611
Gene Name AC2
Protein Name AC2 protein
Coding Region ATGCGATCTTCGTCACCCTCCAAAGCGCACTCTACTCAGGTTCCTATCAAGGTGCAACACCGCAACGCCAAGAAAGCAACGAGGAGACGGAGAGTTGATCTCCCTTGTGGCTGTTCATACTTCATTGCACTAGGCTGTCACAATCATGGATTCTCGCACAGGGGAAGCTATCACTGCAGCTCAAGCAGAGAGTGGCGTATATATCTGGACGGTCAAAAATCCCCTATATTTCAAGATAATCAGCCACGACGAGAGACCATTTCTGATGAACCACGACATCATCACAATACAAGTCCAATTCAATTACAACCTGAGGAAAGCGTTGGGAATACACCAATGTTTTCTAATCTTCCAGATCTGGACTCATTTACGTCCTCAGACCTGGCGTTTCTTAAGAGTATTTAG
Protein Sequence MRSSSPSKAHSTQVPIKVQHRNAKKATRRRRVDLPCGCSYFIALGCHNHGFSHRGSYHCSSSREWRIYLDGQKSPIFQDNQPRRETISDEPRHHHNTSPIQLQPEESVGNTPMFSNLPDLDSFTSSDLAFLKSI

NCBI Accession YP_003104750.1
Location 1514-2599
Gene Name AC1
Protein Name AC1 protein
Coding Region ATGCCTCCGCCCAAAAAATTTCTAATAAATGCCAAAAACTATTTCCTCACATACCCACATTGCTCACTAAGCAAAGAAGAAGCACTTTCCCAATTTTTAGCCCTAACGACACCAACCAATAAATTATTCATTCGAATCTGCAGGGAATTACACGAAGATGGGTCTCCTCACCTGCATGTCCTCATCCAGTTCGAAGGAAAATTCAAATGCCAAAACAACAGATTCTTCGATCTCGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGAGCGCTAAAAGCTCAACAGACGTCAAAGCCTACATGGACAAAGACGGAGACGTGCTTGATCATGGAGTTTTCCAGATCGATGGAAGATCGGCTAGAGGAGGTTGCCAGTCTGCAAACGACGCATATGCCGAGGCAATCAATTCAGGGTCCAAAGCTACGGCCCTCAATATATTAAGGGAGAAAGCTCCCAAAGATTTTGTTTTACAGTTTCATAATTTAAATAGTAATTTAGATAGGATTTTTACTCCTCCAATGGAGGTTTACGTTTCTCCTTTTTCTTCCTCTTCGTTTGATCGAGTTCCAGAAGAACTCGAAGAGTGGGCTGCAGAGAACGTTGTCAGTGCCGCTGCGCGGCCATTACGACCAATAAGTATAGTCATAGAGGGCGATAGTCGGACGGGGAAGACGATGTGGGCTCGATCATTGGGTCCACACAATTATCTGTGTGGTCATCTTGATTTGAGTCCAAAGGTGTACAGTAATGATGCCTGGTACAACGTCATTGATGACGTTGATCCGCACTACCTAAAGCATTTTAAAGAATTCATGGGGGCCCAAAGGGACTGGCAAAGCAACACAAAGTACGGAAAACCCGTTCAAATTAAAGGGGGAATTCCCACTATCTTCCTCTGCAATCCCGGCCCCAATTCAAGCTATAAAGAATTCTTGGACGAAGAGAAAAACAGCGCACTCAAACACTGGGCAATAAAAAATGCGATCTTCGTCACCCTCCAAAGCGCACTCTACTCAGGTTCCTATCAAGGTGCAACACCGCAACGCCAAGAAAGCAACGAGGAGACGGAGAGTTGA
Protein Sequence MPPPKKFLINAKNYFLTYPHCSLSKEEALSQFLALTTPTNKLFIRICRELHEDGSPHLHVLIQFEGKFKCQNNRFFDLVSPTRSAHFHPNIQSAKSSTDVKAYMDKDGDVLDHGVFQIDGRSARGGCQSANDAYAEAINSGSKATALNILREKAPKDFVLQFHNLNSNLDRIFTPPMEVYVSPFSSSSFDRVPEELEEWAAENVVSAAARPLRPISIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNSALKHWAIKNAIFVTLQSALYSGSYQGATPQRQESNEETES

NCBI Accession YP_003104751.1
Location 2149-2442
Gene Name AC4
Protein Name AC4 protein
Coding Region ATGGGTCTCCTCACCTGCATGTCCTCATCCAGTTCGAAGGAAAATTCAAATGCCAAAACAACAGATTCTTCGATCTCGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGAGCGCTAAAAGCTCAACAGACGTCAAAGCCTACATGGACAAAGACGGAGACGTGCTTGATCATGGAGTTTTCCAGATCGATGGAAGATCGGCTAGAGGAGGTTGCCAGTCTGCAAACGACGCATATGCCGAGGCAATCAATTCAGGGTCCAAAGCTACGGCCCTCAATATATTAA
Protein Sequence MGLLTCMSSSSSKENSNAKTTDSSISYPQPGQHISIRTFRALKAQQTSKPTWTKTETCLIMEFSRSMEDRLEEVASLQTTHMPRQSIQGPKLRPSIY