Tomato leaf curl Guangdong virus
Basic Information
Genus |
Begomovirus
|
NCBI Assembly |
GCF_000869445.1 |
Isolate |
China: Guangdong, Guangzhou |
Release date |
2015/2/13 |
Submitter |
He,Z.F., Yu,H. |
Host |
|
Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGATTTTTTTTATGGTGGTCCCCCCCACTAAGTTTTGTCGGCCAATGAGAACGCTCTCTCAAATGTTAGTTAAATAGTTGTCCCTTATAAAACTTGGTCCCTAAGTACTCATTGTAAAGATGTGGGATCCTCTTTTAAACGAGTTTCCTGAAACCGTACATGGTTTTAGGTGTATGCTAGCGATTAAGTATTTACAGTTAGTAGAGAATACATACTCTCCGGATACGTTGGGGTACGATCTAATACGTGATTTAATATTGGTTATTCGTGCTAGGGATTATGTCGAAGCGTCCCGCAGATATAGTCATTTCCACTCCCGCATCCAAGGTGCGTCGCCGGTTGAATTTCGACAGCCCATATGTCAGCCGTGCTGCTGCCCCCACTGTCCTCGTCACAAACAAAAGGAGGTCATGGGTGAATCGGCCCATGTACCGAAAGCCCAAGATGTACAGGATGTACAAAAGCCCTGATGTTCCTCGGGGTTGTGAAGGCCCATGTAAAGTCCAATCGTATGAACAGCGTCATGATGTAGTCCATGTAGGTAAGGTCATTTGTGTGTCTGATGTTACTCGTGGTAATGGGTTGACTCATCGTGTTGGGAAGAGGTTTTGTGTCAAGTCTGTGTATGTGTTAGGTAAAATATGGATGGATGAGAATATTAAGACTAAAAATCACACAAACACTGTGATGTTTTTTTTAGTTCGTGATAGAAGACCCTTCGGCACTCCCCAAGATTTCGGGCAGGTGTTTAACATGTATGATAACGAGCCAAGTACAGCAACTGTTAAGAACGATAACAGAGATCGTTTTCAAGTTCTTCGTCGATTTCAGGCGACTGTCACCGGTGGTCAGTATGCAAGTAAGGAGCAAGCAATAGTTAGGAAGTTTATGAAGGTCAATAATCATGTAACGTATAATCATCAAGAGGCTGCGAAGTATGATAACCATACTGAGAATGCTCTGTTATTGTATATGGCATGTACGCATGCTAGTAATCCAGTGTATGCTACCTTGAAAATCAGGATCTATTTCTATGATTCTGTACAAAATTAATAAAGATTGAATTTTATTATACTTGAGAATGTTGTTTCAATTGTCCCTTCTAATACATCATACAGTACATGTGAAATTGCTCTAATTACATTGTTGATACTAATCACTCCTAAATTCGCTAAATATTTCATACATTGATATTTAAATACTCTTAAGAAATGCGAGGTCTGAGGATGTAAAAGAGTCCAGATCCGGCAGGTTAGAAAACATTGGTGTATCCCCAGCGCTTTCCTCAGGTTGTAATTGAATTGGATTTGGACGGTTATGATGTCGTGGTTCCTCCGGAATGGTCTCTCTAGGTGTTGGGGTATCTTGAAATATAGGGGATTGTTGATTGTCCAGGTATATACGCCATTCTCTGCTTGAGCCGCAGTGATGAGTTCCCCTGTGCGTAAATCCATGTGATGCGCAATCAAGTCCAAAATAGTAAGAGCATCCACAAGGTAGATCAACTCTACGTCTGCGAACTGGTCTCCTCTTCGCTATTTTGTGTTGGACTTTGATTGGTACTTGAGTACAATGGCCCTGTGAGGGTGACGAATGTTGCATTTTTTAATGCCCAGTTTCTGAGTGCAGAATTCTTATCCTCGTCCAAGTACTCTTTATATGATGAAGTTGGTCCTGGATTGCATAGGAAGATTGTTGGGATACCTCCTTTAATTTGAATTGGTTTCCCGTACTTCGTGTTGCTTTGCCAGTCTCGTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGATAGTGGGGATCTACGTCATCAATGACGTTGTACCAGGCATCATTAGAATACACCTTGGGACTCAAGTCCAGGTGACCACATAAATAGTTATGTGGACCCAAAGAACGAGCCCACATTGTCTTGCCGGTTCTACTCTCGCCCTCGATTACAATACTATTGGGCCTAAAAGGCCGCGCAGCGGCACCCATTACATTTTCTGCAGCCCATTCTTCGAGTTCTTCCGGAACGAGATCAAAAGAAGAAGAAAGAAAAGGAGATACAAAAATCTCTAAAGGAGGTGCAAAAATCCTATCTAAATTACTATTTAAATTATGAAATTGAAAAATATAATCTTTTGGGAGTTTCTCCCTTATTATCGCTAAGGCAGCGTCTTTGGAACCTGCATTTAAAGCCTCTGCACATGCGTCGTTAGCATTCTGGCAGCCTCCCCTAGCACTTCGTCCGTCGACCTGGAATTGACCCCATTCAATGATGTCTCCATCCTTATGGATGTAGGACTTGACATCGGAGCTGGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGTTGATCTGGTTGGGGAAACCAGGTCGAAGAATCTGTTATTCGTGCAGTTGTATTTGCCTTCGAATTGCATAAGCACGTGGAGATGAGGGTTCCCATTCTTGTGTAATTCTCTGCAAATTTTTATGAATTTTATATTGGTAGGGGTTTGCAGGTTTTGTAACTGGGAAAGTGCTTCCTCTTTGGTGAGAGAGCACTGTGGGTATGTTAAGAAATAATTTTTGGCTTTAATAGAAAAACGTCCCGCACGAGGCATTTTGGAATTGGGGGGCACTCAAAGTCTGAGCAATCGGGGGAACTGGGGGGCAATTTATATGGTGCCCCCCAAATGGCATAATCGTAAATATGCATAAGAAATCCAAAATTCAAATTGGTAAAGCGGCCATCCGTATAATATT
Gene Information
NCBI Accession
|
YP_764443.1
|
Location
|
132-482 |
Gene Name
|
AV2 |
Protein Name
|
AV2 protein |
Coding Region
|
ATGTGGGATCCTCTTTTAAACGAGTTTCCTGAAACCGTACATGGTTTTAGGTGTATGCTAGCGATTAAGTATTTACAGTTAGTAGAGAATACATACTCTCCGGATACGTTGGGGTACGATCTAATACGTGATTTAATATTGGTTATTCGTGCTAGGGATTATGTCGAAGCGTCCCGCAGATATAGTCATTTCCACTCCCGCATCCAAGGTGCGTCGCCGGTTGAATTTCGACAGCCCATATGTCAGCCGTGCTGCTGCCCCCACTGTCCTCGTCACAAACAAAAGGAGGTCATGGGTGAATCGGCCCATGTACCGAAAGCCCAAGATGTACAGGATGTACAAAAGCCCTGA |
Protein Sequence
|
MWDPLLNEFPETVHGFRCMLAIKYLQLVENTYSPDTLGYDLIRDLILVIRARDYVEASRRYSHFHSRIQGASPVEFRQPICQPCCCPHCPRHKQKEVMGESAHVPKAQDVQDVQKP |
NCBI Accession
|
YP_764444.1
|
Location
|
292-1065 |
Gene Name
|
AV1 |
Protein Name
|
capsid protein |
Coding Region
|
ATGTCGAAGCGTCCCGCAGATATAGTCATTTCCACTCCCGCATCCAAGGTGCGTCGCCGGTTGAATTTCGACAGCCCATATGTCAGCCGTGCTGCTGCCCCCACTGTCCTCGTCACAAACAAAAGGAGGTCATGGGTGAATCGGCCCATGTACCGAAAGCCCAAGATGTACAGGATGTACAAAAGCCCTGATGTTCCTCGGGGTTGTGAAGGCCCATGTAAAGTCCAATCGTATGAACAGCGTCATGATGTAGTCCATGTAGGTAAGGTCATTTGTGTGTCTGATGTTACTCGTGGTAATGGGTTGACTCATCGTGTTGGGAAGAGGTTTTGTGTCAAGTCTGTGTATGTGTTAGGTAAAATATGGATGGATGAGAATATTAAGACTAAAAATCACACAAACACTGTGATGTTTTTTTTAGTTCGTGATAGAAGACCCTTCGGCACTCCCCAAGATTTCGGGCAGGTGTTTAACATGTATGATAACGAGCCAAGTACAGCAACTGTTAAGAACGATAACAGAGATCGTTTTCAAGTTCTTCGTCGATTTCAGGCGACTGTCACCGGTGGTCAGTATGCAAGTAAGGAGCAAGCAATAGTTAGGAAGTTTATGAAGGTCAATAATCATGTAACGTATAATCATCAAGAGGCTGCGAAGTATGATAACCATACTGAGAATGCTCTGTTATTGTATATGGCATGTACGCATGCTAGTAATCCAGTGTATGCTACCTTGAAAATCAGGATCTATTTCTATGATTCTGTACAAAATTAA |
Protein Sequence
|
MSKRPADIVISTPASKVRRRLNFDSPYVSRAAAPTVLVTNKRRSWVNRPMYRKPKMYRMYKSPDVPRGCEGPCKVQSYEQRHDVVHVGKVICVSDVTRGNGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNTVMFFLVRDRRPFGTPQDFGQVFNMYDNEPSTATVKNDNRDRFQVLRRFQATVTGGQYASKEQAIVRKFMKVNNHVTYNHQEAAKYDNHTENALLLYMACTHASNPVYATLKIRIYFYDSVQN |
NCBI Accession
|
YP_764445.1
|
Location
|
1062-1466 |
Gene Name
|
AC3 |
Protein Name
|
AC3 protein |
Coding Region
|
ATGGATTTACGCACAGGGGAACTCATCACTGCGGCTCAAGCAGAGAATGGCGTATATACCTGGACAATCAACAATCCCCTATATTTCAAGATACCCCAACACCTAGAGAGACCATTCCGGAGGAACCACGACATCATAACCGTCCAAATCCAATTCAATTACAACCTGAGGAAAGCGCTGGGGATACACCAATGTTTTCTAACCTGCCGGATCTGGACTCTTTTACATCCTCAGACCTCGCATTTCTTAAGAGTATTTAAATATCAATGTATGAAATATTTAGCGAATTTAGGAGTGATTAGTATCAACAATGTAATTAGAGCAATTTCACATGTACTGTATGATGTATTAGAAGGGACAATTGAAACAACATTCTCAAGTATAATAAAATTCAATCTTTATTAA |
Protein Sequence
|
MDLRTGELITAAQAENGVYTWTINNPLYFKIPQHLERPFRRNHDIITVQIQFNYNLRKALGIHQCFLTCRIWTLLHPQTSHFLRVFKYQCMKYLANLGVISINNVIRAISHVLYDVLEGTIETTFSSIIKFNLY |
NCBI Accession
|
YP_764446.1
|
Location
|
1207-1614 |
Gene Name
|
AC2 |
Protein Name
|
AC2 protein |
Coding Region
|
ATGCAACATTCGTCACCCTCACAGGGCCATTGTACTCAAGTACCAATCAAAGTCCAACACAAAATAGCGAAGAGGAGACCAGTTCGCAGACGTAGAGTTGATCTACCTTGTGGATGCTCTTACTATTTTGGACTTGATTGCGCATCACATGGATTTACGCACAGGGGAACTCATCACTGCGGCTCAAGCAGAGAATGGCGTATATACCTGGACAATCAACAATCCCCTATATTTCAAGATACCCCAACACCTAGAGAGACCATTCCGGAGGAACCACGACATCATAACCGTCCAAATCCAATTCAATTACAACCTGAGGAAAGCGCTGGGGATACACCAATGTTTTCTAACCTGCCGGATCTGGACTCTTTTACATCCTCAGACCTCGCATTTCTTAAGAGTATTTAA |
Protein Sequence
|
MQHSSPSQGHCTQVPIKVQHKIAKRRPVRRRRVDLPCGCSYYFGLDCASHGFTHRGTHHCGSSREWRIYLDNQQSPIFQDTPTPRETIPEEPRHHNRPNPIQLQPEESAGDTPMFSNLPDLDSFTSSDLAFLKSI |
NCBI Accession
|
YP_764447.1
|
Location
|
1520-2602 |
Gene Name
|
AC1 |
Protein Name
|
AC1 protein |
Coding Region
|
ATGCCTCGTGCGGGACGTTTTTCTATTAAAGCCAAAAATTATTTCTTAACATACCCACAGTGCTCTCTCACCAAAGAGGAAGCACTTTCCCAGTTACAAAACCTGCAAACCCCTACCAATATAAAATTCATAAAAATTTGCAGAGAATTACACAAGAATGGGAACCCTCATCTCCACGTGCTTATGCAATTCGAAGGCAAATACAACTGCACGAATAACAGATTCTTCGACCTGGTTTCCCCAACCAGATCAACACATTTCCATCCGAACATTCAGGGAGCTAAATCCAGCTCCGATGTCAAGTCCTACATCCATAAGGATGGAGACATCATTGAATGGGGTCAATTCCAGGTCGACGGACGAAGTGCTAGGGGAGGCTGCCAGAATGCTAACGACGCATGTGCAGAGGCTTTAAATGCAGGTTCCAAAGACGCTGCCTTAGCGATAATAAGGGAGAAACTCCCAAAAGATTATATTTTTCAATTTCATAATTTAAATAGTAATTTAGATAGGATTTTTGCACCTCCTTTAGAGATTTTTGTATCTCCTTTTCTTTCTTCTTCTTTTGATCTCGTTCCGGAAGAACTCGAAGAATGGGCTGCAGAAAATGTAATGGGTGCCGCTGCGCGGCCTTTTAGGCCCAATAGTATTGTAATCGAGGGCGAGAGTAGAACCGGCAAGACAATGTGGGCTCGTTCTTTGGGTCCACATAACTATTTATGTGGTCACCTGGACTTGAGTCCCAAGGTGTATTCTAATGATGCCTGGTACAACGTCATTGATGACGTAGATCCCCACTATCTAAAGCACTTTAAAGAATTCATGGGGGCCCAACGAGACTGGCAAAGCAACACGAAGTACGGGAAACCAATTCAAATTAAAGGAGGTATCCCAACAATCTTCCTATGCAATCCAGGACCAACTTCATCATATAAAGAGTACTTGGACGAGGATAAGAATTCTGCACTCAGAAACTGGGCATTAAAAAATGCAACATTCGTCACCCTCACAGGGCCATTGTACTCAAGTACCAATCAAAGTCCAACACAAAATAGCGAAGAGGAGACCAGTTCGCAGACGTAG |
Protein Sequence
|
MPRAGRFSIKAKNYFLTYPQCSLTKEEALSQLQNLQTPTNIKFIKICRELHKNGNPHLHVLMQFEGKYNCTNNRFFDLVSPTRSTHFHPNIQGAKSSSDVKSYIHKDGDIIEWGQFQVDGRSARGGCQNANDACAEALNAGSKDAALAIIREKLPKDYIFQFHNLNSNLDRIFAPPLEIFVSPFLSSSFDLVPEELEEWAAENVMGAAARPFRPNSIVIEGESRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLDEDKNSALRNWALKNATFVTLTGPLYSSTNQSPTQNSEEETSSQT |
NCBI Accession
|
YP_764448.1
|
Location
|
2188-2445 |
Gene Name
|
AC4 |
Protein Name
|
AC4 protein |
Coding Region
|
ATGGGAACCCTCATCTCCACGTGCTTATGCAATTCGAAGGCAAATACAACTGCACGAATAACAGATTCTTCGACCTGGTTTCCCCAACCAGATCAACACATTTCCATCCGAACATTCAGGGAGCTAAATCCAGCTCCGATGTCAAGTCCTACATCCATAAGGATGGAGACATCATTGAATGGGGTCAATTCCAGGTCGACGGACGAAGTGCTAGGGGAGGCTGCCAGAATGCTAACGACGCATGTGCAGAGGCTTTAA |
Protein Sequence
|
MGTLISTCLCNSKANTTARITDSSTWFPQPDQHISIRTFRELNPAPMSSPTSIRMETSLNGVNSRSTDEVLGEAARMLTTHVQRL |