Tomato leaf curl Ghana virus


Basic Information

Genus Begomovirus
NCBI Assembly GCF_000874905.1
Isolate Ghana:Akumadan
Release date 2015/2/13
Submitter Osei,M.K., Akromah,R., Shih,S.L., Lee,L.M., Green,S.K.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_010313
ACCGGATGGCCGCGATTTTTTTTCCACTACACGCTCCAAAGCAAAAGTAAAGTAATCAATGGTCCCCACGCACTAGTTTATGTTGGCCAATCAGAATGAGGCCCGAAAGCTTCGTTGTTTTCCCGCTTGTCCTTATATACTTGCGCACTAAGTTGTAATAATTGCACTATGTGGGACCCTTTATTGAATGAGTTCCCAGACTCAGTCCATGGGTTTCGTTGTATGCTGGCTATAAAATATCTGCAGCTCTTAGAAGAGGAGTACGAGCCCAATACTTTGGGCCACGATTTAGTTAGAGATCTCATTTCTGTCATTAGGGCTAAAAATTATGTCGAAGCGTCCCGGCGATATAATAATTTCCACGCCCGTCTCGAAGGTGCGTCGACGGCTGAACTTCGACAGCCCCTACGCCAGCCGTGCAGTTGTCCCCACTGTCCGAGGCATAAGCAAGCGTCGTTCGTGGACGTACGGGCCCATGTACCGAAAGCCCAGAATGTATCGGATGTACAAAAGCCCTGATGTGCCCCGTGGATGTGAAGGCCCGTGTAAGATACAGTCATTTGAGCAAAGGGATGATGTTAAGCATGTTGGTATAGTTCGTTGTGTTAGTGATGTGACCCGTGGGTCCGGTCTGACTCATAGAGTAGGGAAGAGATTTTGCATTAAGTCTATTTACATTTTAGGTAAAGTTTGGATGGACGAAAACATCAAAAAGCAGAATCATACTAACAATGTTATGTTTTTCTTAGTTCGTGATAGAAGGCCTTATGGCAGTCCTAGTGATTTCGGGCAGATTTTTAACATGTTCGACAACGAGCCGAGTACAGCTACAATCAAGAATGATCTCAGAGACCGCTATCAAGTGCTTCGTAAATTCAGTGCAACTGTTATTGGTGGTCCCTCTGGATGCAAGGAACAGGCTTTGGTGAAGAGATTTTTTAAGGTTAACAATCATGTTGTGTATAACCATCAGGAGGAGGCTAAATATGCCAACCATACTGAGAATGCTTTGTTGTTGTATATGGCTTGTACTCATGCTTCGAATCCCGTGTATGCTACTCTAAAAATACGCATCTATTTCTACGATGCAGTTACGAATTAATAAATATTAAATTTTATTTCATGTTGTTCTAATACACAATTTGTACCTTCAAGTACGTTGTACAATACATGATCAACTGCTCTAATAATTGCATTAATTGAAATTACACCCAAATTATCTAAATATTTAAACACTTGAACTCTAAATACCCTTAAGAAACGACCAGTCTGAGGGCGTAAGCTCGTCCAAACTTTGAAGTTCAGAAAACACTTGTGAATCCCCAACGCCTTCCGCAGGTTGTGGTTGAACCTGATTTGAACTGTGATTATGTCGTGTTGGTAGTTGAACGGTCTCTCGTCGTGGTTGGTTATCTTGAAATACAGGGGATTTTGTATCTCCCAGATAAAAACGCCACTCTGTGCTTGAGCTGCAGTGATGAGTTCCCCGGTGCGTAAATCCATTATTGGCGCAGTTGATGTGTATGAAGACTGAACACCCGCACTCTAGGTCCACCCTTTTACGCCTCACTACTTTCTTCTTCGCGATGCGGTGCTGGACTTTGATTGGCACTTGTGTACAATGGCTCGTGGAGGGTGATGAAGATCGCATTTTTTATTGCCCATGCTTTCAATGGTGCATTTTTCACTTCGTCTAGAAACTCTTTATATGATGATGTCGGGCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAATGGGCTTCCCGTATTTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGTTTGAGATAGTGGGGATCGACGTCATCAATGACGTTATACCAAGCATCATTTGAATACACCTTTGGACTCAGGTCTAGATGGCCACACAAGTAATTGTGTGGACCTAATGACCTGGCCCACATTGTCTTGCCTGTACGACTATCACCTTCAATAACTATATTAACCGGTCTCCAAGGCCGCGCAGCGGCATCCATTACATTCTCGGAAACCCACTCTTCAAGTTCTTCCGGAACTTGATTAAAAGAAGAAGATAAAAAGGGAGAAACATAAGGAGCTGGAGGCTCCTGAAAAATCCTATCTAAATTACTATTTAAATTATGAAATTGCAAGACAAAATCTTTTGGAGCTAACTCCTTTACAATTCTAAGAGCTTCTGCCTTACTTCCTGCGTTAAGCGCCTGGGCGTAAGCGTCATTGGCAGATTGTTGTCCTCCTCTTGCCGATCTTCCGTCGATCTGAAACTCTCCCCATTCAAGGGTGTCTCCGTCTTTATCGATATAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGAATGTTTGGATGGAAATGTGCTGACCGGGTCGGGGATACCAAGTCGAAGAATCTGTTATTTTGGCATTTGTATTTCCCCTCGAATTGAATGAGCGCATGCAGATGAGGTTCCCCATTTTCATGCAGTTCTCTGCAGATTTTGATATATTTTTTGTTTGTGGGTGTTTGGAGATTTTGAAGAAGGGAAAGTGCCTCTTCTTTAGTTAGAGAGCATTGTGGATAAGTTAGAAAATAATTTTTGGCATTTATAAGAAACTTACGTGGAGGAGCCATTTAGTCAGAGGACCTGATTGACCAGCTCTTCTATATCAAATGAATCGGGGAATGGGTCTCTATATATACTGAGGACCCTAATGGCATTATTGTAATTATGAAAAGATTTTACTTTAATTCGAATTTCAAATTCGAATACCCAAAGCGGCCATCCGTATAATATT

Gene Information

NCBI Accession YP_001661650.1
Location 169-519
Gene Name V2
Protein Name pre-coat protein
Coding Region ATGTGGGACCCTTTATTGAATGAGTTCCCAGACTCAGTCCATGGGTTTCGTTGTATGCTGGCTATAAAATATCTGCAGCTCTTAGAAGAGGAGTACGAGCCCAATACTTTGGGCCACGATTTAGTTAGAGATCTCATTTCTGTCATTAGGGCTAAAAATTATGTCGAAGCGTCCCGGCGATATAATAATTTCCACGCCCGTCTCGAAGGTGCGTCGACGGCTGAACTTCGACAGCCCCTACGCCAGCCGTGCAGTTGTCCCCACTGTCCGAGGCATAAGCAAGCGTCGTTCGTGGACGTACGGGCCCATGTACCGAAAGCCCAGAATGTATCGGATGTACAAAAGCCCTGA
Protein Sequence MWDPLLNEFPDSVHGFRCMLAIKYLQLLEEEYEPNTLGHDLVRDLISVIRAKNYVEASRRYNNFHARLEGASTAELRQPLRQPCSCPHCPRHKQASFVDVRAHVPKAQNVSDVQKP

NCBI Accession YP_001661651.1
Location 329-1102
Gene Name V1
Protein Name coat protein
Coding Region ATGTCGAAGCGTCCCGGCGATATAATAATTTCCACGCCCGTCTCGAAGGTGCGTCGACGGCTGAACTTCGACAGCCCCTACGCCAGCCGTGCAGTTGTCCCCACTGTCCGAGGCATAAGCAAGCGTCGTTCGTGGACGTACGGGCCCATGTACCGAAAGCCCAGAATGTATCGGATGTACAAAAGCCCTGATGTGCCCCGTGGATGTGAAGGCCCGTGTAAGATACAGTCATTTGAGCAAAGGGATGATGTTAAGCATGTTGGTATAGTTCGTTGTGTTAGTGATGTGACCCGTGGGTCCGGTCTGACTCATAGAGTAGGGAAGAGATTTTGCATTAAGTCTATTTACATTTTAGGTAAAGTTTGGATGGACGAAAACATCAAAAAGCAGAATCATACTAACAATGTTATGTTTTTCTTAGTTCGTGATAGAAGGCCTTATGGCAGTCCTAGTGATTTCGGGCAGATTTTTAACATGTTCGACAACGAGCCGAGTACAGCTACAATCAAGAATGATCTCAGAGACCGCTATCAAGTGCTTCGTAAATTCAGTGCAACTGTTATTGGTGGTCCCTCTGGATGCAAGGAACAGGCTTTGGTGAAGAGATTTTTTAAGGTTAACAATCATGTTGTGTATAACCATCAGGAGGAGGCTAAATATGCCAACCATACTGAGAATGCTTTGTTGTTGTATATGGCTTGTACTCATGCTTCGAATCCCGTGTATGCTACTCTAAAAATACGCATCTATTTCTACGATGCAGTTACGAATTAA
Protein Sequence MSKRPGDIIISTPVSKVRRRLNFDSPYASRAVVPTVRGISKRRSWTYGPMYRKPRMYRMYKSPDVPRGCEGPCKIQSFEQRDDVKHVGIVRCVSDVTRGSGLTHRVGKRFCIKSIYILGKVWMDENIKKQNHTNNVMFFLVRDRRPYGSPSDFGQIFNMFDNEPSTATIKNDLRDRYQVLRKFSATVIGGPSGCKEQALVKRFFKVNNHVVYNHQEEAKYANHTENALLLYMACTHASNPVYATLKIRIYFYDAVTN

NCBI Accession YP_001661652.1
Location 1099-1503
Gene Name C3
Protein Name replication enhancement protein
Coding Region ATGGATTTACGCACCGGGGAACTCATCACTGCAGCTCAAGCACAGAGTGGCGTTTTTATCTGGGAGATACAAAATCCCCTGTATTTCAAGATAACCAACCACGACGAGAGACCGTTCAACTACCAACACGACATAATCACAGTTCAAATCAGGTTCAACCACAACCTGCGGAAGGCGTTGGGGATTCACAAGTGTTTTCTGAACTTCAAAGTTTGGACGAGCTTACGCCCTCAGACTGGTCGTTTCTTAAGGGTATTTAGAGTTCAAGTGTTTAAATATTTAGATAATTTGGGTGTAATTTCAATTAATGCAATTATTAGAGCAGTTGATCATGTATTGTACAACGTACTTGAAGGTACAAATTGTGTATTAGAACAACATGAAATAAAATTTAATATTTATTAA
Protein Sequence MDLRTGELITAAQAQSGVFIWEIQNPLYFKITNHDERPFNYQHDIITVQIRFNHNLRKALGIHKCFLNFKVWTSLRPQTGRFLRVFRVQVFKYLDNLGVISINAIIRAVDHVLYNVLEGTNCVLEQHEIKFNIY

NCBI Accession YP_001661653.1
Location 1244-1651
Gene Name C2
Protein Name transcriptional activation protein
Coding Region ATGCGATCTTCATCACCCTCCACGAGCCATTGTACACAAGTGCCAATCAAAGTCCAGCACCGCATCGCGAAGAAGAAAGTAGTGAGGCGTAAAAGGGTGGACCTAGAGTGCGGGTGTTCAGTCTTCATACACATCAACTGCGCCAATAATGGATTTACGCACCGGGGAACTCATCACTGCAGCTCAAGCACAGAGTGGCGTTTTTATCTGGGAGATACAAAATCCCCTGTATTTCAAGATAACCAACCACGACGAGAGACCGTTCAACTACCAACACGACATAATCACAGTTCAAATCAGGTTCAACCACAACCTGCGGAAGGCGTTGGGGATTCACAAGTGTTTTCTGAACTTCAAAGTTTGGACGAGCTTACGCCCTCAGACTGGTCGTTTCTTAAGGGTATTTAG
Protein Sequence MRSSSPSTSHCTQVPIKVQHRIAKKKVVRRKRVDLECGCSVFIHINCANNGFTHRGTHHCSSSTEWRFYLGDTKSPVFQDNQPRRETVQLPTRHNHSSNQVQPQPAEGVGDSQVFSELQSLDELTPSDWSFLKGI

NCBI Accession YP_001661654.1
Location 1560-2639
Gene Name C1
Protein Name replication-associated protein
Coding Region ATGGCTCCTCCACGTAAGTTTCTTATAAATGCCAAAAATTATTTTCTAACTTATCCACAATGCTCTCTAACTAAAGAAGAGGCACTTTCCCTTCTTCAAAATCTCCAAACACCCACAAACAAAAAATATATCAAAATCTGCAGAGAACTGCATGAAAATGGGGAACCTCATCTGCATGCGCTCATTCAATTCGAGGGGAAATACAAATGCCAAAATAACAGATTCTTCGACTTGGTATCCCCGACCCGGTCAGCACATTTCCATCCAAACATTCAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTATATCGATAAAGACGGAGACACCCTTGAATGGGGAGAGTTTCAGATCGACGGAAGATCGGCAAGAGGAGGACAACAATCTGCCAATGACGCTTACGCCCAGGCGCTTAACGCAGGAAGTAAGGCAGAAGCTCTTAGAATTGTAAAGGAGTTAGCTCCAAAAGATTTTGTCTTGCAATTTCATAATTTAAATAGTAATTTAGATAGGATTTTTCAGGAGCCTCCAGCTCCTTATGTTTCTCCCTTTTTATCTTCTTCTTTTAATCAAGTTCCGGAAGAACTTGAAGAGTGGGTTTCCGAGAATGTAATGGATGCCGCTGCGCGGCCTTGGAGACCGGTTAATATAGTTATTGAAGGTGATAGTCGTACAGGCAAGACAATGTGGGCCAGGTCATTAGGTCCACACAATTACTTGTGTGGCCATCTAGACCTGAGTCCAAAGGTGTATTCAAATGATGCTTGGTATAACGTCATTGATGACGTCGATCCCCACTATCTCAAACACTTTAAAGAGTTCATGGGGGCCCAAAGGGACTGGCAAAGCAACACCAAATACGGGAAGCCCATTCAAATTAAAGGTGGAATTCCCACTATCTTCCTCTGCAATCCAGGCCCGACATCATCATATAAAGAGTTTCTAGACGAAGTGAAAAATGCACCATTGAAAGCATGGGCAATAAAAAATGCGATCTTCATCACCCTCCACGAGCCATTGTACACAAGTGCCAATCAAAGTCCAGCACCGCATCGCGAAGAAGAAAGTAGTGAGGCGTAA
Protein Sequence MAPPRKFLINAKNYFLTYPQCSLTKEEALSLLQNLQTPTNKKYIKICRELHENGEPHLHALIQFEGKYKCQNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYIDKDGDTLEWGEFQIDGRSARGGQQSANDAYAQALNAGSKAEALRIVKELAPKDFVLQFHNLNSNLDRIFQEPPAPYVSPFLSSSFNQVPEELEEWVSENVMDAAARPWRPVNIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEFLDEVKNAPLKAWAIKNAIFITLHEPLYTSANQSPAPHREEESSEA

NCBI Accession YP_001661655.1
Location 2189-2488
Gene Name C4
Protein Name C4 protein
Coding Region ATGAAAATGGGGAACCTCATCTGCATGCGCTCATTCAATTCGAGGGGAAATACAAATGCCAAAATAACAGATTCTTCGACTTGGTATCCCCGACCCGGTCAGCACATTTCCATCCAAACATTCAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTATATCGATAAAGACGGAGACACCCTTGAATGGGGAGAGTTTCAGATCGACGGAAGATCGGCAAGAGGAGGACAACAATCTGCCAATGACGCTTACGCCCAGGCGCTTAACGCAGGAAGTAAGGCAGAAGCTCTTAGAATTGTAA
Protein Sequence MKMGNLICMRSFNSRGNTNAKITDSSTWYPRPGQHISIQTFRELNPAPTSSPISIKTETPLNGESFRSTEDRQEEDNNLPMTLTPRRLTQEVRQKLLEL