Tomato leaf curl Diana virus


Basic Information

Genus Begomovirus
NCBI Assembly GCF_002986995.1
Isolate Madagascar:Diana, Namakely
Release date 2018/8/26
Submitter Lefeuvre,P., Martin,D.P., Hoareau,M., Naze,F., Becker,N., Delatte,H., Reynaud,B., Lett,J.M.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_038896
ACCGGTGGGCGCGAAAAAAAAAAGTGGGCCCTACCACGTGATCATGTCGCGCGAGTGCTGTCCAATCAGAACGCGCGCTCTACGCATTATAAATTAAAATTTGAAATATATACTTCCTCGCGAAGGAGTTATCCCACAAAATGTGGGATCCACTTTTAAACGAGTTTCCAGAAACCGTTCACGGTTTCCGTTGTATGCTAGCTATCAAATACCTGCAGGCGGTCAGAGAGTCTTACGATCCCAGCACACTTGGTTACGATCTTCTAAGCGATCTCATCGGAGTTGTCCGCCGTACCAATTATGTCGAAGCGACCAGCAGATATCATCATTTCCACTCCCGCCTCGAAAGTGCGTCGCCGTCTGAACTTCGACAGCCCCGTGCAGTCCTCTGCTCGTGCCCCCACTGTCCTCGTCACAAACAAACGTCGGGCCTGGACCAACAGGCCCAATTACAGAAAGCCCAGGATGTACAGAATGTATCGCAGCCCAGATGTCCCAAAGGGTTGTGAAGGCCCGTGTAAGGTCCAGTCATATGATCAGCGTGATGATGTCAAACATACTGGTATTGTTAGATGTGTGTCCGATGTCACCAAGGGTCCTGGCCTTACACACCGCATTGGAAAGCGTTTTACGATCAAGTCCATCTACATCCTGGGGAAGATATGGATGGATGAGAACATCAAGAAACAGAATCACACTAACACTGTAATGTTTTTCCTTGTCCGAGATAGAAGACCTTATGGGAACTCTCCATTGGATTTTGGTCAAGTTTTTAACATGTTTGACAACGAACCTAGCACTGCTACGGTCAAGAACGATCTCCGTGATCATTTCCAGGTGATTAGGAAGTTTACTGCTACTGTCACTGGTGGTCCTTCGGGATGTAAGGAACAAGCACTGGTTCGTCGTTTTTTTAAGATTAATAGTCAGATTGTTTACAACCATCAAGATGCTGGAAAGTTCGAAAATCATACTGAGAATGCTATCTTGTTGTACATGGCATGTACTCATGCCTCTAATCCTGTGTACGCTACTCTTAAGATACGGATATATTTCTACGATTCTGTATCGAATTAATAAATATTGAATTTTATTTCATGATTCTCCTTAACTTGGAGTGTATTGATAAGTACATCGTATAATACATGATCAATTGCTTTGATTACATTATTAATTGAAATAACCCCTAATCTATCTAAATATTTTAAAACTTGGGTCCTAAATACCCTTAAGAAAAGACCAGTCTGAGGCCGTGAGGTCGTCCAGACCCTGAAGTTGAGAAAACATTTGTGAATCCCCAGTTCTTTCCTCAAGTTGTGGTTGAACCGTATCTGGACTGATATGATGTCGTGGGGCATGTTGAACGGCCTGTTCTCGTGGTCGATAATCTTGAAATACAGGGGATTTTGTATCTCCCAGATAAACACGCCACTCTGTGCTTGAGCTGCAGTGATGAGTTCCCCGGTGCGTAAATCCATGGTTTATGCAGTTGATGTGTATATAGTATGAGCAGCCGCAGTCGAGATCTATCCTTCTACGCCTGATTGCTCTCTTCTTCGCCTCCCGATGTTGAACCTTGATTGGAACCTGAGAACAGTGGCTCGGAGAGGGTGACAAAGACCGCATTCTTTAATGCCCAGGATTTGAGATGCGTGTTCTTGTCCTCGTCTAAAAACTCTTTATACGAGGAATTTGGACCTGGATTGCATAGGAAGATTGTTGGAATGCCCCCTTTAATTTGAACTGGCTTCCCGTACTTTGTGTTGCTTTGCCAGTCCTTCTGGGCCCCCATGAACTCTTTAAAGTGTTTCAGATAATGCGGGTCGACGTCATCGATGACGTTATACCATGCGTCATTACTGAACACCTTTGGGCTTAGGTCTAAATGGCCGCACAGATAATTGTGAGGCCCAAGGCTTCTGGCCCATACAGTCTTCCCCGTCCTGCTCTCCCCTTCTACTACTATACTAATCGGCCTACTTGGCCGCGCAGCGGCATCCATGACGTTCTCCGCCGCCCATTGTTCAAGTTCTTCTGGAACTTGATCGAAAGAAGAAGACAAAAAGGGACATGAATAAGGCTCTATGGGAGCCTGAAAAATCATATCTAAATTTGATTTTAAATTATGATATTGAAAAATAAAATCTTTAGGGAGCTTCTCCCTTATAATAGCCAGAGCGGCTTCAGCGGAACCTGCGTTTAATGCGTCTGCACATGCGTCGTTAGCATTCTGGCAGCCTCCTCGAGCACTTCTGCCGTCGACCTGGAATTCTCCCCATTCCAGTGTGTCTCCGTCCTTGTCGATGTAGGACTTGACATCGGAGCTGGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGAAACCAGGTCGAAGAATCGCTGATTCTGGCACTTGTATTTTCCCTCGAACTGGATAAGCACATGGAGATGAGGTTCCCCATTCTCGTGTAGTTCCCTGCAGATCTTGATGTATTTCTTATTGACGGGTGTATTTAGGTTTTGCAATTGGGAAAGTGCTTCCTCTTTGGTGAGGGAGCATTGTGGATAAGTGAGAAAATAATTTTTGCAATTTATCAGGAATCGCTTTGGAGGAGCCATTTGACTTGGTCAATCGGGTCTCATTGCATCTCCCCGGTATATGAGGTCCTCTTTTATAGTGAGACCCAAATGGCATTATGGTAAAAACTCCAATAAATTTGAACCCCCATAGCGCCCACCGTTTTAATATT

Gene Information

NCBI Accession YP_009508185.1
Location 141-509
Gene Name v2
Protein Name V2 protein
Coding Region ATGTGGGATCCACTTTTAAACGAGTTTCCAGAAACCGTTCACGGTTTCCGTTGTATGCTAGCTATCAAATACCTGCAGGCGGTCAGAGAGTCTTACGATCCCAGCACACTTGGTTACGATCTTCTAAGCGATCTCATCGGAGTTGTCCGCCGTACCAATTATGTCGAAGCGACCAGCAGATATCATCATTTCCACTCCCGCCTCGAAAGTGCGTCGCCGTCTGAACTTCGACAGCCCCGTGCAGTCCTCTGCTCGTGCCCCCACTGTCCTCGTCACAAACAAACGTCGGGCCTGGACCAACAGGCCCAATTACAGAAAGCCCAGGATGTACAGAATGTATCGCAGCCCAGATGTCCCAAAGGGTTGTGA
Protein Sequence MWDPLLNEFPETVHGFRCMLAIKYLQAVRESYDPSTLGYDLLSDLIGVVRRTNYVEATSRYHHFHSRLESASPSELRQPRAVLCSCPHCPRHKQTSGLDQQAQLQKAQDVQNVSQPRCPKGL

NCBI Accession YP_009508186.1
Location 301-1077
Gene Name cp
Protein Name coat protein
Coding Region ATGTCGAAGCGACCAGCAGATATCATCATTTCCACTCCCGCCTCGAAAGTGCGTCGCCGTCTGAACTTCGACAGCCCCGTGCAGTCCTCTGCTCGTGCCCCCACTGTCCTCGTCACAAACAAACGTCGGGCCTGGACCAACAGGCCCAATTACAGAAAGCCCAGGATGTACAGAATGTATCGCAGCCCAGATGTCCCAAAGGGTTGTGAAGGCCCGTGTAAGGTCCAGTCATATGATCAGCGTGATGATGTCAAACATACTGGTATTGTTAGATGTGTGTCCGATGTCACCAAGGGTCCTGGCCTTACACACCGCATTGGAAAGCGTTTTACGATCAAGTCCATCTACATCCTGGGGAAGATATGGATGGATGAGAACATCAAGAAACAGAATCACACTAACACTGTAATGTTTTTCCTTGTCCGAGATAGAAGACCTTATGGGAACTCTCCATTGGATTTTGGTCAAGTTTTTAACATGTTTGACAACGAACCTAGCACTGCTACGGTCAAGAACGATCTCCGTGATCATTTCCAGGTGATTAGGAAGTTTACTGCTACTGTCACTGGTGGTCCTTCGGGATGTAAGGAACAAGCACTGGTTCGTCGTTTTTTTAAGATTAATAGTCAGATTGTTTACAACCATCAAGATGCTGGAAAGTTCGAAAATCATACTGAGAATGCTATCTTGTTGTACATGGCATGTACTCATGCCTCTAATCCTGTGTACGCTACTCTTAAGATACGGATATATTTCTACGATTCTGTATCGAATTAA
Protein Sequence MSKRPADIIISTPASKVRRRLNFDSPVQSSARAPTVLVTNKRRAWTNRPNYRKPRMYRMYRSPDVPKGCEGPCKVQSYDQRDDVKHTGIVRCVSDVTKGPGLTHRIGKRFTIKSIYILGKIWMDENIKKQNHTNTVMFFLVRDRRPYGNSPLDFGQVFNMFDNEPSTATVKNDLRDHFQVIRKFTATVTGGPSGCKEQALVRRFFKINSQIVYNHQDAGKFENHTENAILLYMACTHASNPVYATLKIRIYFYDSVSN

NCBI Accession YP_009508187.1
Location 1074-1478
Gene Name c3
Protein Name C3 protein
Coding Region ATGGATTTACGCACCGGGGAACTCATCACTGCAGCTCAAGCACAGAGTGGCGTGTTTATCTGGGAGATACAAAATCCCCTGTATTTCAAGATTATCGACCACGAGAACAGGCCGTTCAACATGCCCCACGACATCATATCAGTCCAGATACGGTTCAACCACAACTTGAGGAAAGAACTGGGGATTCACAAATGTTTTCTCAACTTCAGGGTCTGGACGACCTCACGGCCTCAGACTGGTCTTTTCTTAAGGGTATTTAGGACCCAAGTTTTAAAATATTTAGATAGATTAGGGGTTATTTCAATTAATAATGTAATCAAAGCAATTGATCATGTATTATACGATGTACTTATCAATACACTCCAAGTTAAGGAGAATCATGAAATAAAATTCAATATTTATTAA
Protein Sequence MDLRTGELITAAQAQSGVFIWEIQNPLYFKIIDHENRPFNMPHDIISVQIRFNHNLRKELGIHKCFLNFRVWTTSRPQTGLFLRVFRTQVLKYLDRLGVISINNVIKAIDHVLYDVLINTLQVKENHEIKFNIY

NCBI Accession YP_009508188.1
Location 1219-1626
Gene Name c2
Protein Name C2 protein
Coding Region ATGCGGTCTTTGTCACCCTCTCCGAGCCACTGTTCTCAGGTTCCAATCAAGGTTCAACATCGGGAGGCGAAGAAGAGAGCAATCAGGCGTAGAAGGATAGATCTCGACTGCGGCTGCTCATACTATATACACATCAACTGCATAAACCATGGATTTACGCACCGGGGAACTCATCACTGCAGCTCAAGCACAGAGTGGCGTGTTTATCTGGGAGATACAAAATCCCCTGTATTTCAAGATTATCGACCACGAGAACAGGCCGTTCAACATGCCCCACGACATCATATCAGTCCAGATACGGTTCAACCACAACTTGAGGAAAGAACTGGGGATTCACAAATGTTTTCTCAACTTCAGGGTCTGGACGACCTCACGGCCTCAGACTGGTCTTTTCTTAAGGGTATTTAG
Protein Sequence MRSLSPSPSHCSQVPIKVQHREAKKRAIRRRRIDLDCGCSYYIHINCINHGFTHRGTHHCSSSTEWRVYLGDTKSPVFQDYRPREQAVQHAPRHHISPDTVQPQLEERTGDSQMFSQLQGLDDLTASDWSFLKGI

NCBI Accession YP_009508189.1
Location 1535-2614
Gene Name rep
Protein Name replication associated protein
Coding Region ATGGCTCCTCCAAAGCGATTCCTGATAAATTGCAAAAATTATTTTCTCACTTATCCACAATGCTCCCTCACCAAAGAGGAAGCACTTTCCCAATTGCAAAACCTAAATACACCCGTCAATAAGAAATACATCAAGATCTGCAGGGAACTACACGAGAATGGGGAACCTCATCTCCATGTGCTTATCCAGTTCGAGGGAAAATACAAGTGCCAGAATCAGCGATTCTTCGACCTGGTTTCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCCAGCTCCGATGTCAAGTCCTACATCGACAAGGACGGAGACACACTGGAATGGGGAGAATTCCAGGTCGACGGCAGAAGTGCTCGAGGAGGCTGCCAGAATGCTAACGACGCATGTGCAGACGCATTAAACGCAGGTTCCGCTGAAGCCGCTCTGGCTATTATAAGGGAGAAGCTCCCTAAAGATTTTATTTTTCAATATCATAATTTAAAATCAAATTTAGATATGATTTTTCAGGCTCCCATAGAGCCTTATTCATGTCCCTTTTTGTCTTCTTCTTTCGATCAAGTTCCAGAAGAACTTGAACAATGGGCGGCGGAGAACGTCATGGATGCCGCTGCGCGGCCAAGTAGGCCGATTAGTATAGTAGTAGAAGGGGAGAGCAGGACGGGGAAGACTGTATGGGCCAGAAGCCTTGGGCCTCACAATTATCTGTGCGGCCATTTAGACCTAAGCCCAAAGGTGTTCAGTAATGACGCATGGTATAACGTCATCGATGACGTCGACCCGCATTATCTGAAACACTTTAAAGAGTTCATGGGGGCCCAGAAGGACTGGCAAAGCAACACAAAGTACGGGAAGCCAGTTCAAATTAAAGGGGGCATTCCAACAATCTTCCTATGCAATCCAGGTCCAAATTCCTCGTATAAAGAGTTTTTAGACGAGGACAAGAACACGCATCTCAAATCCTGGGCATTAAAGAATGCGGTCTTTGTCACCCTCTCCGAGCCACTGTTCTCAGGTTCCAATCAAGGTTCAACATCGGGAGGCGAAGAAGAGAGCAATCAGGCGTAG
Protein Sequence MAPPKRFLINCKNYFLTYPQCSLTKEEALSQLQNLNTPVNKKYIKICRELHENGEPHLHVLIQFEGKYKCQNQRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYIDKDGDTLEWGEFQVDGRSARGGCQNANDACADALNAGSAEAALAIIREKLPKDFIFQYHNLKSNLDMIFQAPIEPYSCPFLSSSFDQVPEELEQWAAENVMDAAARPSRPISIVVEGESRTGKTVWARSLGPHNYLCGHLDLSPKVFSNDAWYNVIDDVDPHYLKHFKEFMGAQKDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEDKNTHLKSWALKNAVFVTLSEPLFSGSNQGSTSGGEEESNQA

NCBI Accession YP_009508190.1
Location 2200-2457
Gene Name c4
Protein Name C4 protein
Coding Region ATGGGGAACCTCATCTCCATGTGCTTATCCAGTTCGAGGGAAAATACAAGTGCCAGAATCAGCGATTCTTCGACCTGGTTTCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCCAGCTCCGATGTCAAGTCCTACATCGACAAGGACGGAGACACACTGGAATGGGGAGAATTCCAGGTCGACGGCAGAAGTGCTCGAGGAGGCTGCCAGAATGCTAACGACGCATGTGCAGACGCATTAA
Protein Sequence MGNLISMCLSSSRENTSARISDSSTWFPQPGQHISIRTFRELNPAPMSSPTSTRTETHWNGENSRSTAEVLEEAARMLTTHVQTH