Tomato leaf curl Comoros virus


Basic Information

Genus Begomovirus
NCBI Assembly GCF_001430535.1
Isolate Mayotte:Dembeni
Release date 2015/11/3
Submitter Delatte,H., Martin,D.P., Naze,F., Goldbach,R., Reynaud,B., Peterschmitt,M., Lett,J.M.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_028114
ACCGGATGGCCGCGCCCGAAAAAAGAAGGTGGTCCCCGCGCACTATCTTTTGTCATCCAATAAGAATCGCGCGTCAAAGCTTAGATAAGCGTTTTTGTCCTTATAAACTTGCTCGCCAAGTAGTTGTCTCACAAAATGTGGGATCCACTCTTGAACGAGTTCCCAGACTCTGTTCACGGTTTTCGTTGTATGCTAGCTATCAAATATTTGCAGGCCATTGAGCAAACCTATGAGCCCAACACTTTGGGCCACGAATTGATCCGTGATCTCATCTCCGTCGTTAGAGCTCGTGATTATGTCGAAGCGACCCGCCGATATAATCATTTCCACGCCCGCCTCGAAGGTGCGTCGGAGACTGAACTTCGACAGCCCTTATACCAGCCGTGCTGTTGTCCCCATTGTCCCAGGCACAAGCAGACGTCGGTCATGGACGTACAGGCCCATGTATCGAAAGCCCAGGACGTACAGAATGTACAGAAGCCCTGACGTTCCAAAGGGTTGTGAAGGCCCATGTAAGGTCCAGTCTTATGAGCAGAGGGATGATGTTAAGCATACTGGTATTGTTCGTTGTGTTAGTGATGTTACGCGTGGTCCGGGAATTACTCATAGGGTTGGCAAGAGGTTCTGTGTTAAGTCCATTTACATTTTAGGGAAAATATGGATGGATGAAAATATCAAGAAGCAGAATCACACTAATCAGGTTATGTTTTTTTTAGTTCGTGATAGAAGGCCTTACGGTGCAGCCCCAATGGATTTTGGGCAGGTGTTTAACATGTTTGATAACGAGCCCAGTACAGCTACGGTGAAGAATGATTTGAGAGACAGGTACCAGGTTTTGCGGAAGTTTCATGCAACTGTTGTAGGTGGTCCCTCTGGGATGAAGGAACAGGCGTTAGTTAAGAGGTTTTTTAGGATTAATAGTCATGTAACTTATAATCATCAGGAAGCAGCTAAGTATGAGAACCATACTGAGAATGCTTTGTTGTTGTATATGGCATGTACTCATGCCTCTAATCCAGTGTATGCTACTCTTAAGATACGGATCTACTTCTATGATTCGGTCGGCAATTAATAAATATTAAATTTTATTTCATGATTCTCGTCGACTTGAAGTGTCTTTAGAATTACATCGTATAATACATGATCAACTGCTCTGATTACATTATTAATTGAAATAACTCCTAATCTATCTAAATATTTAAGAACGTGATTCCTAAATACGCTTAAGAAAAGACCAGTCTGAGGCTGTAAGCTCGTCCAGACCCTGAAGTTGAGAAAACATTTGTGAATCCCCAGTTCCTTCCTCAGGTTGTGGTTGAATCTTATCTGGACTGATATGATGTCGTGGGGCATGTTGAATGGCCGGTTGTCGTGGTCGATAATCTTGAAATATAGGGGATTTTGTATCTCCCAGATAAACACGCCACTCTGTGCTTGAGCTGCAGTGATGAGTTCCCCTGTGCGAGAATCCATGATCGATGCAGTTGATGTGTAGATAGTATGAGCAGCCGCAGTCGAGATCGACTCTTCTACGCCTCACTGCCTTCTTCTTGGCTATTCTGTGCTGGACTTTGATTGGCAGTTGAGTAGAGTGGCTCGTGGAGGGTGACGAATGTTGCATTTTTTAATGCCCAGGCTTTCAGGGGTGCATTTTTATCCTCGTCCAGATATTCTTTATATGAGGATGTCGGGCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAATTGGCTTCCCGTACTTTGTATTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTCAGATAATGCGGATCTACGTCATCAATGACGTTGTACCACGCATCATTGCTGTACACCTTGGGGCTCAGGTCAAGATGACCGCACAGATAATTGTGAGGTCCTAATGATCTGGCCCACATTGTTTTGCCGGTACGACTATCACCCTCAATTACTATACTATTCGGCCTCCATGGCCGCGCAGCGGCATCCATGACGTTCTCGGAAACCCACTCTTCAAGTTGTTCCGGAACTTGAGTAAAAGAAGAAGATAAAAAAGGAGAAACATAAGGAGCCGGTGGCTCCTGAAAAATCCTATCTAAATTACTATTTAAATTATGAAATTGCAACACAAAATCTTTTGGTGCTAATTCCTTAATGACTCTAAGAGCCTCTGACTTACTGCCTGTGTTAAGAGCTGCGGCGTAAGCGTCATTGGCTGATTGTTGTCCCCCCCTTGCAGATCGTCCATCGATCTGAAATTCTCCCCATTCGAGGGTGTCTCCGTCCTTGTCGATGTAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGCTTGGGGAAGTAAGGTCGAAGAATCGTTGATTGGTACTATTGTATTTTCCCTCGAATTGAATGAGGGCATGCATATGAGGTTCCCCATTCTCGTGGAGCTCTCTGCAGATTTTGATAAATAGCTTATTTACTGGGGTTTGAAGGGCTCTTATTTGGGAAAGTGCTTCCTCTTTAGTGAGAGAGCATTTGGGATAAGTGAGGAAATAATTTTTGGCTTTGATGCTGAAACGACCGGCTCTCGGCATCTTCTATGTCGTTTATGAATTGGGGGGCACTCAAAGTCTATGGCAATCGGGGGAACTGGGGGGCAATTTATATGGTGCCCCCCAAATGGCATTTCTGTAATAATCCTCATTGTAATTTGAAATTTGAAGTCCCTAAGCGGCCATCCGTATAATATT

Gene Information

NCBI Accession YP_009174971.1
Location 136-486
Gene Name AV2
Protein Name putative AV2 protein
Coding Region ATGTGGGATCCACTCTTGAACGAGTTCCCAGACTCTGTTCACGGTTTTCGTTGTATGCTAGCTATCAAATATTTGCAGGCCATTGAGCAAACCTATGAGCCCAACACTTTGGGCCACGAATTGATCCGTGATCTCATCTCCGTCGTTAGAGCTCGTGATTATGTCGAAGCGACCCGCCGATATAATCATTTCCACGCCCGCCTCGAAGGTGCGTCGGAGACTGAACTTCGACAGCCCTTATACCAGCCGTGCTGTTGTCCCCATTGTCCCAGGCACAAGCAGACGTCGGTCATGGACGTACAGGCCCATGTATCGAAAGCCCAGGACGTACAGAATGTACAGAAGCCCTGA
Protein Sequence MWDPLLNEFPDSVHGFRCMLAIKYLQAIEQTYEPNTLGHELIRDLISVVRARDYVEATRRYNHFHARLEGASETELRQPLYQPCCCPHCPRHKQTSVMDVQAHVSKAQDVQNVQKP

NCBI Accession YP_009174972.1
Location 296-1072
Gene Name AV1
Protein Name coat protein
Coding Region ATGTCGAAGCGACCCGCCGATATAATCATTTCCACGCCCGCCTCGAAGGTGCGTCGGAGACTGAACTTCGACAGCCCTTATACCAGCCGTGCTGTTGTCCCCATTGTCCCAGGCACAAGCAGACGTCGGTCATGGACGTACAGGCCCATGTATCGAAAGCCCAGGACGTACAGAATGTACAGAAGCCCTGACGTTCCAAAGGGTTGTGAAGGCCCATGTAAGGTCCAGTCTTATGAGCAGAGGGATGATGTTAAGCATACTGGTATTGTTCGTTGTGTTAGTGATGTTACGCGTGGTCCGGGAATTACTCATAGGGTTGGCAAGAGGTTCTGTGTTAAGTCCATTTACATTTTAGGGAAAATATGGATGGATGAAAATATCAAGAAGCAGAATCACACTAATCAGGTTATGTTTTTTTTAGTTCGTGATAGAAGGCCTTACGGTGCAGCCCCAATGGATTTTGGGCAGGTGTTTAACATGTTTGATAACGAGCCCAGTACAGCTACGGTGAAGAATGATTTGAGAGACAGGTACCAGGTTTTGCGGAAGTTTCATGCAACTGTTGTAGGTGGTCCCTCTGGGATGAAGGAACAGGCGTTAGTTAAGAGGTTTTTTAGGATTAATAGTCATGTAACTTATAATCATCAGGAAGCAGCTAAGTATGAGAACCATACTGAGAATGCTTTGTTGTTGTATATGGCATGTACTCATGCCTCTAATCCAGTGTATGCTACTCTTAAGATACGGATCTACTTCTATGATTCGGTCGGCAATTAA
Protein Sequence MSKRPADIIISTPASKVRRRLNFDSPYTSRAVVPIVPGTSRRRSWTYRPMYRKPRTYRMYRSPDVPKGCEGPCKVQSYEQRDDVKHTGIVRCVSDVTRGPGITHRVGKRFCVKSIYILGKIWMDENIKKQNHTNQVMFFLVRDRRPYGAAPMDFGQVFNMFDNEPSTATVKNDLRDRYQVLRKFHATVVGGPSGMKEQALVKRFFRINSHVTYNHQEAAKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSVGN

NCBI Accession YP_009174973.1
Location 1069-1473
Gene Name AC3
Protein Name replication enhancer protein
Coding Region ATGGATTCTCGCACAGGGGAACTCATCACTGCAGCTCAAGCACAGAGTGGCGTGTTTATCTGGGAGATACAAAATCCCCTATATTTCAAGATTATCGACCACGACAACCGGCCATTCAACATGCCCCACGACATCATATCAGTCCAGATAAGATTCAACCACAACCTGAGGAAGGAACTGGGGATTCACAAATGTTTTCTCAACTTCAGGGTCTGGACGAGCTTACAGCCTCAGACTGGTCTTTTCTTAAGCGTATTTAGGAATCACGTTCTTAAATATTTAGATAGATTAGGAGTTATTTCAATTAATAATGTAATCAGAGCAGTTGATCATGTATTATACGATGTAATTCTAAAGACACTTCAAGTCGACGAGAATCATGAAATAAAATTTAATATTTATTAA
Protein Sequence MDSRTGELITAAQAQSGVFIWEIQNPLYFKIIDHDNRPFNMPHDIISVQIRFNHNLRKELGIHKCFLNFRVWTSLQPQTGLFLSVFRNHVLKYLDRLGVISINNVIRAVDHVLYDVILKTLQVDENHEIKFNIY

NCBI Accession YP_009174974.1
Location 1214-1621
Gene Name transcriptional transactivator protein
Protein Name AC2
Coding Region ATGCAACATTCGTCACCCTCCACGAGCCACTCTACTCAACTGCCAATCAAAGTCCAGCACAGAATAGCCAAGAAGAAGGCAGTGAGGCGTAGAAGAGTCGATCTCGACTGCGGCTGCTCATACTATCTACACATCAACTGCATCGATCATGGATTCTCGCACAGGGGAACTCATCACTGCAGCTCAAGCACAGAGTGGCGTGTTTATCTGGGAGATACAAAATCCCCTATATTTCAAGATTATCGACCACGACAACCGGCCATTCAACATGCCCCACGACATCATATCAGTCCAGATAAGATTCAACCACAACCTGAGGAAGGAACTGGGGATTCACAAATGTTTTCTCAACTTCAGGGTCTGGACGAGCTTACAGCCTCAGACTGGTCTTTTCTTAAGCGTATTTAG
Protein Sequence MQHSSPSTSHSTQLPIKVQHRIAKKKAVRRRRVDLDCGCSYYLHINCIDHGFSHRGTHHCSSSTEWRVYLGDTKSPIFQDYRPRQPAIQHAPRHHISPDKIQPQPEEGTGDSQMFSQLQGLDELTASDWSFLKRI

NCBI Accession YP_009174975.1
Location 1530-2609
Gene Name AC1
Protein Name replication-associated protein
Coding Region ATGCCGAGAGCCGGTCGTTTCAGCATCAAAGCCAAAAATTATTTCCTCACTTATCCCAAATGCTCTCTCACTAAAGAGGAAGCACTTTCCCAAATAAGAGCCCTTCAAACCCCAGTAAATAAGCTATTTATCAAAATCTGCAGAGAGCTCCACGAGAATGGGGAACCTCATATGCATGCCCTCATTCAATTCGAGGGAAAATACAATAGTACCAATCAACGATTCTTCGACCTTACTTCCCCAAGCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTACATCGACAAGGACGGAGACACCCTCGAATGGGGAGAATTTCAGATCGATGGACGATCTGCAAGGGGGGGACAACAATCAGCCAATGACGCTTACGCCGCAGCTCTTAACACAGGCAGTAAGTCAGAGGCTCTTAGAGTCATTAAGGAATTAGCACCAAAAGATTTTGTGTTGCAATTTCATAATTTAAATAGTAATTTAGATAGGATTTTTCAGGAGCCACCGGCTCCTTATGTTTCTCCTTTTTTATCTTCTTCTTTTACTCAAGTTCCGGAACAACTTGAAGAGTGGGTTTCCGAGAACGTCATGGATGCCGCTGCGCGGCCATGGAGGCCGAATAGTATAGTAATTGAGGGTGATAGTCGTACCGGCAAAACAATGTGGGCCAGATCATTAGGACCTCACAATTATCTGTGCGGTCATCTTGACCTGAGCCCCAAGGTGTACAGCAATGATGCGTGGTACAACGTCATTGATGACGTAGATCCGCATTATCTGAAGCACTTTAAAGAATTCATGGGGGCCCAAAGGGACTGGCAAAGCAATACAAAGTACGGGAAGCCAATTCAAATTAAAGGCGGAATTCCCACTATCTTCCTCTGCAATCCAGGCCCGACATCCTCATATAAAGAATATCTGGACGAGGATAAAAATGCACCCCTGAAAGCCTGGGCATTAAAAAATGCAACATTCGTCACCCTCCACGAGCCACTCTACTCAACTGCCAATCAAAGTCCAGCACAGAATAGCCAAGAAGAAGGCAGTGAGGCGTAG
Protein Sequence MPRAGRFSIKAKNYFLTYPKCSLTKEEALSQIRALQTPVNKLFIKICRELHENGEPHMHALIQFEGKYNSTNQRFFDLTSPSRSAHFHPNIQGAKSSSDVKSYIDKDGDTLEWGEFQIDGRSARGGQQSANDAYAAALNTGSKSEALRVIKELAPKDFVLQFHNLNSNLDRIFQEPPAPYVSPFLSSSFTQVPEQLEEWVSENVMDAAARPWRPNSIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLDEDKNAPLKAWALKNATFVTLHEPLYSTANQSPAQNSQEEGSEA

NCBI Accession YP_009174976.1
Location 2150-2452
Gene Name AC4
Protein Name putative AC4 protein
Coding Region ATGGGGAACCTCATATGCATGCCCTCATTCAATTCGAGGGAAAATACAATAGTACCAATCAACGATTCTTCGACCTTACTTCCCCAAGCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTACATCGACAAGGACGGAGACACCCTCGAATGGGGAGAATTTCAGATCGATGGACGATCTGCAAGGGGGGGACAACAATCAGCCAATGACGCTTACGCCGCAGCTCTTAACACAGGCAGTAAGTCAGAGGCTCTTAGAGTCATTAAGGAATTAG
Protein Sequence MGNLICMPSFNSRENTIVPINDSSTLLPQAGQHISIRTFRELNPAPTSSPTSTRTETPSNGENFRSMDDLQGGDNNQPMTLTPQLLTQAVSQRLLESLRN