Tomato leaf curl China virus
Basic Information
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGATTTTTTTATGTGGTCCCCACCACTAAGAAATGTCCTCCACTTAGAACGCTCCCTCAAAGCCTATTTAATTCAAATCCGTTATAAATACTTGGTCCCCAAGTACTCACTTTAAAATATGTGGGATCCTTTACTGAATGAGTTTCCCGAAACCGTACATGGTTTCAGGTGTATGTTAGCCATCAAGTATTTGCAGCTGGTAGAAAATACATACTCCCCTGATACTTTAGGGTACGATTTAATTCGTGATTTAATTTTAGTCGTCCGTGCTAGAGATTATGTCGAAGCGTCCCGCCGATATAGTCATTTCCACTCCCGCATCCAAGGTGCGTCGCCGGCTGAACTTCGACAGCCCGTATGCCAGCCGTGCTGCTGTCCCCACTGTCCTCGTCACAAATCGAAAGCGATCATGGACCAACAGGCCCATGAATCGAAAGCCGAAAATGTACAGGATGTACAGAAGCCCTGATGTCCCTAGAGGATGTGAGGGTCCATGTAAGGTCCAGTCGTTTGATGCTAAGAACGATATTGGTCACATGGGTAAGGTTATATGTTTGTCCGATGTTACGAGGGGAAATGGTTTGACTCATCGAGTTGGTAAACGTTTCTGCGTTAAGTCGTTGTATTTTGTGGGCAAGATTTGGATGGATGAGAACATCAAGGTTAAGAACCACACTAACACCGTTTTGTTCTGGATTGTCCGAGACAGGCGTCCTAGTGGCACCCCTAGTGATTTTCAGCAGGTTTTTAATGTTTATGATAACGAGCCGTCTACCGCTACTGTGAAGAACGATCAGCGTGATCGTTACCAAGTGATACGCAGGTTTCAGGCAACGGTGACTGGTGGACAATATGCAGCTAAGGAACAGGCGATAATTAGAAGATTTTATCGTGTTAATAATTACGTAGTGTATAATCACCAGGAAGCTGGGAAGTATGAGAACCATACTGAAAATGCTCTGTTGTTGTATATGGCATGTACTCATGCCTCTAATCCTGTGTATGCTACTTTGAAAGTGAGGAGTTATTTCTATGACTCAGTCACGAATTAATAAAGATTAAATTTTATTACATGAGAACTTTGTACAAATGTTGTTTGCGTTAATGCGTCCCATAATACATAATTCACTGCTCTAATTACATTATTTAAACTAATGACACCTAAATTACTGAGAAACTTCAAAACTTGTGTCCTAAATACTCTTAAGAAACGACCAGTCTGAAGGTGTGAGTTCGTCCATATCCGGAAGTCCAGAAAACATTGGTGCATCCCCAGTGCTTTCCTCAGGTTGTAGTTGAATTGGATCCTGACCGTCACTATGTCGTTGTCCGACAGGAAGGGCCTGTTTCGTAGTTCCGTTATCTTGAAATATAGGGGATTTGTTATCTCCCAAGTAAAAACGCCATTCTCTGCCTGAGTTGCAGTGATGAGTTCCCCTGTGCGTGAATCCATGGTTGGCGCAGTTAAGTGAGCTGAAATAAGAACAACCACAGGGAAGGTCAATCCTCCGTCTCCTGGTTATTTTCTTCTTGGCTATCCTGTGCTGGACTTTGATAGGTACTTGAGTACAGTGGCTCGGTGATGCTGACGAAGACTGCATTTTTTATTGCCCACGACTTTAATGCAGTATTCTTTTCCTCGTCTAGGTATTCTTTATAGCTTGAGTTGGGCCCTGGATTGCATAGGAAGATAGCGGGAATGCCACCTTTAATTTGAACAGGCTTTCCGTACTTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAATGCTTTAGGTAGTGCGGATCTACGTCATCAATGACGTTGTACCAGGCGTCATTATTGTATACCTTTGGACTCAAATCAAGATGACCACACAAATAATTATGGCGTCCTAATGACCTGGCCCACATCGTCTTCCCCGTCCGACTATCGCCTTCGATAACTATACTTATTGGTCGTAATGGCCGCGCAGCGGAACTGACGACGTTCTCTGCAGCCCAGTCTTCGAGTTCCTCTGGAACTCGATCAAACGAAGAAGAAGAAAAAGGCGAAACATAAACCTCCATCTGAGGAGTAAAAATCCTATCTAAATTATTATTTAAATTATGAAATTGTAAAACATAATCTTTAGGAGCTTTCTCCTTTAGTATATTGAGGGCCGAAGCTTTGGACCCTGAATTGATTGCCTCGGCATATGCGTCGTTGGCAGATTGGCAACCTCCTCTAGCCGATCTTCCATCGATCTGGAAAACTCCATGATCAAGCACGTCTCCGTCTTTGTCCATGTAGGACTTGACATCTGTTGAGCTTTTAGCTGCCTGAATGTTCGGATGGAAATGTGCTGACCTGCTTGGGGATGTGAGATCGAAGAATCTTTGATTTTTACACTGGAATTTTCCTTCGAATTGGATGAGCACATGCAGGTGAGGAGACCCATCTTCGTGTAATTCTCTGCAGATGCGGATAAATAGTTTATTTACTGGGGTTTCTAGGGTTTTAATTTGGGAAAGTGCTTCTTCTTTAGTGAGAGAGCAGTGTGGATATGTGAGGAAATAATTTTTGGCATTAATTCTGAATTTATTTGGGGGAGCCATTGACTGGTCAATCGGTGTCTCTCAAACTTGGCTATACAATTGGTGTCTGGTGTCTTATTTATATGTAGACACCAAATGGCATTATCGTAATTCCCATAAGAATTTCAAAATCCAAAAGCGGCCATCCGTATAATATT
Gene Information
NCBI Accession
|
NP_955737.1
|
Location
|
131-481 |
Gene Name
|
AV2 |
Protein Name
|
AV2 protein |
Coding Region
|
ATGTGGGATCCTTTACTGAATGAGTTTCCCGAAACCGTACATGGTTTCAGGTGTATGTTAGCCATCAAGTATTTGCAGCTGGTAGAAAATACATACTCCCCTGATACTTTAGGGTACGATTTAATTCGTGATTTAATTTTAGTCGTCCGTGCTAGAGATTATGTCGAAGCGTCCCGCCGATATAGTCATTTCCACTCCCGCATCCAAGGTGCGTCGCCGGCTGAACTTCGACAGCCCGTATGCCAGCCGTGCTGCTGTCCCCACTGTCCTCGTCACAAATCGAAAGCGATCATGGACCAACAGGCCCATGAATCGAAAGCCGAAAATGTACAGGATGTACAGAAGCCCTGA |
Protein Sequence
|
MWDPLLNEFPETVHGFRCMLAIKYLQLVENTYSPDTLGYDLIRDLILVVRARDYVEASRRYSHFHSRIQGASPAELRQPVCQPCCCPHCPRHKSKAIMDQQAHESKAENVQDVQKP |
NCBI Accession
|
NP_955738.1
|
Location
|
291-1064 |
Gene Name
|
AV1 |
Protein Name
|
AV1 protein |
Coding Region
|
ATGTCGAAGCGTCCCGCCGATATAGTCATTTCCACTCCCGCATCCAAGGTGCGTCGCCGGCTGAACTTCGACAGCCCGTATGCCAGCCGTGCTGCTGTCCCCACTGTCCTCGTCACAAATCGAAAGCGATCATGGACCAACAGGCCCATGAATCGAAAGCCGAAAATGTACAGGATGTACAGAAGCCCTGATGTCCCTAGAGGATGTGAGGGTCCATGTAAGGTCCAGTCGTTTGATGCTAAGAACGATATTGGTCACATGGGTAAGGTTATATGTTTGTCCGATGTTACGAGGGGAAATGGTTTGACTCATCGAGTTGGTAAACGTTTCTGCGTTAAGTCGTTGTATTTTGTGGGCAAGATTTGGATGGATGAGAACATCAAGGTTAAGAACCACACTAACACCGTTTTGTTCTGGATTGTCCGAGACAGGCGTCCTAGTGGCACCCCTAGTGATTTTCAGCAGGTTTTTAATGTTTATGATAACGAGCCGTCTACCGCTACTGTGAAGAACGATCAGCGTGATCGTTACCAAGTGATACGCAGGTTTCAGGCAACGGTGACTGGTGGACAATATGCAGCTAAGGAACAGGCGATAATTAGAAGATTTTATCGTGTTAATAATTACGTAGTGTATAATCACCAGGAAGCTGGGAAGTATGAGAACCATACTGAAAATGCTCTGTTGTTGTATATGGCATGTACTCATGCCTCTAATCCTGTGTATGCTACTTTGAAAGTGAGGAGTTATTTCTATGACTCAGTCACGAATTAA |
Protein Sequence
|
MSKRPADIVISTPASKVRRRLNFDSPYASRAAVPTVLVTNRKRSWTNRPMNRKPKMYRMYRSPDVPRGCEGPCKVQSFDAKNDIGHMGKVICLSDVTRGNGLTHRVGKRFCVKSLYFVGKIWMDENIKVKNHTNTVLFWIVRDRRPSGTPSDFQQVFNVYDNEPSTATVKNDQRDRYQVIRRFQATVTGGQYAAKEQAIIRRFYRVNNYVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKVRSYFYDSVTN |
NCBI Accession
|
NP_955739.1
|
Location
|
1061-1465 |
Gene Name
|
AC3 |
Protein Name
|
AC3 protein |
Coding Region
|
ATGGATTCACGCACAGGGGAACTCATCACTGCAACTCAGGCAGAGAATGGCGTTTTTACTTGGGAGATAACAAATCCCCTATATTTCAAGATAACGGAACTACGAAACAGGCCCTTCCTGTCGGACAACGACATAGTGACGGTCAGGATCCAATTCAACTACAACCTGAGGAAAGCACTGGGGATGCACCAATGTTTTCTGGACTTCCGGATATGGACGAACTCACACCTTCAGACTGGTCGTTTCTTAAGAGTATTTAGGACACAAGTTTTGAAGTTTCTCAGTAATTTAGGTGTCATTAGTTTAAATAATGTAATTAGAGCAGTGAATTATGTATTATGGGACGCATTAACGCAAACAACATTTGTACAAAGTTCTCATGTAATAAAATTTAATCTTTATTAA |
Protein Sequence
|
MDSRTGELITATQAENGVFTWEITNPLYFKITELRNRPFLSDNDIVTVRIQFNYNLRKALGMHQCFLDFRIWTNSHLQTGRFLRVFRTQVLKFLSNLGVISLNNVIRAVNYVLWDALTQTTFVQSSHVIKFNLY |
NCBI Accession
|
NP_955740.1
|
Location
|
1206-1613 |
Gene Name
|
AC2 |
Protein Name
|
AC2 protein |
Coding Region
|
ATGCAGTCTTCGTCAGCATCACCGAGCCACTGTACTCAAGTACCTATCAAAGTCCAGCACAGGATAGCCAAGAAGAAAATAACCAGGAGACGGAGGATTGACCTTCCCTGTGGTTGTTCTTATTTCAGCTCACTTAACTGCGCCAACCATGGATTCACGCACAGGGGAACTCATCACTGCAACTCAGGCAGAGAATGGCGTTTTTACTTGGGAGATAACAAATCCCCTATATTTCAAGATAACGGAACTACGAAACAGGCCCTTCCTGTCGGACAACGACATAGTGACGGTCAGGATCCAATTCAACTACAACCTGAGGAAAGCACTGGGGATGCACCAATGTTTTCTGGACTTCCGGATATGGACGAACTCACACCTTCAGACTGGTCGTTTCTTAAGAGTATTTAG |
Protein Sequence
|
MQSSSASPSHCTQVPIKVQHRIAKKKITRRRRIDLPCGCSYFSSLNCANHGFTHRGTHHCNSGREWRFYLGDNKSPIFQDNGTTKQALPVGQRHSDGQDPIQLQPEESTGDAPMFSGLPDMDELTPSDWSFLKSI |
NCBI Accession
|
NP_955741.1
|
Location
|
1513-2601 |
Gene Name
|
AC1 |
Protein Name
|
AC1 protein |
Coding Region
|
ATGGCTCCCCCAAATAAATTCAGAATTAATGCCAAAAATTATTTCCTCACATATCCACACTGCTCTCTCACTAAAGAAGAAGCACTTTCCCAAATTAAAACCCTAGAAACCCCAGTAAATAAACTATTTATCCGCATCTGCAGAGAATTACACGAAGATGGGTCTCCTCACCTGCATGTGCTCATCCAATTCGAAGGAAAATTCCAGTGTAAAAATCAAAGATTCTTCGATCTCACATCCCCAAGCAGGTCAGCACATTTCCATCCGAACATTCAGGCAGCTAAAAGCTCAACAGATGTCAAGTCCTACATGGACAAAGACGGAGACGTGCTTGATCATGGAGTTTTCCAGATCGATGGAAGATCGGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAATTCAGGGTCCAAAGCTTCGGCCCTCAATATACTAAAGGAGAAAGCTCCTAAAGATTATGTTTTACAATTTCATAATTTAAATAATAATTTAGATAGGATTTTTACTCCTCAGATGGAGGTTTATGTTTCGCCTTTTTCTTCTTCTTCGTTTGATCGAGTTCCAGAGGAACTCGAAGACTGGGCTGCAGAGAACGTCGTCAGTTCCGCTGCGCGGCCATTACGACCAATAAGTATAGTTATCGAAGGCGATAGTCGGACGGGGAAGACGATGTGGGCCAGGTCATTAGGACGCCATAATTATTTGTGTGGTCATCTTGATTTGAGTCCAAAGGTATACAATAATGACGCCTGGTACAACGTCATTGATGACGTAGATCCGCACTACCTAAAGCATTTTAAAGAATTCATGGGGGCCCAAAGGGACTGGCAAAGCAACACAAAGTACGGAAAGCCTGTTCAAATTAAAGGTGGCATTCCCGCTATCTTCCTATGCAATCCAGGGCCCAACTCAAGCTATAAAGAATACCTAGACGAGGAAAAGAATACTGCATTAAAGTCGTGGGCAATAAAAAATGCAGTCTTCGTCAGCATCACCGAGCCACTGTACTCAAGTACCTATCAAAGTCCAGCACAGGATAGCCAAGAAGAAAATAACCAGGAGACGGAGGATTGA |
Protein Sequence
|
MAPPNKFRINAKNYFLTYPHCSLTKEEALSQIKTLETPVNKLFIRICRELHEDGSPHLHVLIQFEGKFQCKNQRFFDLTSPSRSAHFHPNIQAAKSSTDVKSYMDKDGDVLDHGVFQIDGRSARGGCQSANDAYAEAINSGSKASALNILKEKAPKDYVLQFHNLNNNLDRIFTPQMEVYVSPFSSSSFDRVPEELEDWAAENVVSSAARPLRPISIVIEGDSRTGKTMWARSLGRHNYLCGHLDLSPKVYNNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPAIFLCNPGPNSSYKEYLDEEKNTALKSWAIKNAVFVSITEPLYSSTYQSPAQDSQEENNQETED |
NCBI Accession
|
NP_955742.1
|
Location
|
2151-2444 |
Gene Name
|
AC4 |
Protein Name
|
AC4 protein |
Coding Region
|
ATGGGTCTCCTCACCTGCATGTGCTCATCCAATTCGAAGGAAAATTCCAGTGTAAAAATCAAAGATTCTTCGATCTCACATCCCCAAGCAGGTCAGCACATTTCCATCCGAACATTCAGGCAGCTAAAAGCTCAACAGATGTCAAGTCCTACATGGACAAAGACGGAGACGTGCTTGATCATGGAGTTTTCCAGATCGATGGAAGATCGGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAATTCAGGGTCCAAAGCTTCGGCCCTCAATATACTAA |
Protein Sequence
|
MGLLTCMCSSNSKENSSVKIKDSSISHPQAGQHISIRTFRQLKAQQMSSPTWTKTETCLIMEFSRSMEDRLEEVANLPTTHMPRQSIQGPKLRPSIY |