Tomato leaf curl Cebu virus


Basic Information

Genus Begomovirus
NCBI Assembly GCF_000875005.1
Isolate Philippines: Cebu
Release date 2015/2/13
Submitter Tsai,W.S., Shih,S.L., Venkatesan,S.G., Aquino,M.U., Green,S.K., Kenyon,L., Jan,F.J., Aquino,M., Huang,Y.C., Jan,F.-J.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_010439
ACCGTGGGACGCGCCTTTTTTTTAACCAATCATATTGGACCTTGACAGCTATTTAAAGTGCATTCTGCACCATAAAAGAGTTTTCTTTATAGGTAATGGCGAACATGTGGGATCCTCTAGTTCATCCTTTCCCTGAAAGCTTGCACGGCTTTAGATGTATGCTTGCCATCAAATATCTTCAAAGCTTACAGGGCAAATATTCTCCGGATACTGTTGGGCATGAGTTTTTGAAAGATTTTATATGTATTTTGCGTAGTAGGAATTATGCCGAAGCGTTCAATAGATACAGTGACGTCGTTGCCAATGTCTATAACACGACGGAGACTCAATTACGGGAGTCAGTTCAGTCTCCCTGCCTCTGTCCCCACTGTCCCAGACATGTCTTACAAGCGAAGGTCGTGGACTTACAGGCCCATGTATCGCAAGCCCAAGATGTACAGAATGTATAGAAGCCGTGATGTTCCTCGTGGGTGTGAAGGCCCGTGTAAGGTTCAGTCCTATGAGCAGCGCCATGATATAGTTCATGTGGGTAAGGTCATATGTGTTTCTGACGTCACTCGTGGTAACGGGCTTACACATCGTGTTGGAAAGAGGTTTTGTGTAAAGTCTGTGTATGTGTTGGGGAAGGTCTGGATGGATGAGAACATCAAGACTAAAAATCACACTAACACTGTCATGTTTTTTTTAGTGCGTGATAGGAGGCCATATGGGTCTCCCCAGGATTTTGGTCAGGTTTTTAACATGTATGATAATGAGCCTAGTACTGCCACTGTAAAAAATGATAATAGAGATCGATTCCAAGTTCTTCGTAGATTTCAAGCTACTGTAACGGGAGGTCAGTATGCAAGCAAGGAGCAAGCAATAGTTAAGAAGTTCATGAAGATTAACAACCATGTCACTTACAATCATCAGGAGGCTGCGAAGTACGATAACCACACAGAAAATGCTTTGTTGTTATATATGGCATGTACTCATGCTAGTAATCCAGTGTATGCTACGTTGAAGATCAGAATCTATTTCTATGATTCTGTTCAAAATTAATAAATATTGAATTTTATTATATGAGAAATTTGTACATCGATTGTTTTTTCAAGTACATCGTATAGTACATAGTCGAATGCCCTAATTACATTGTTTATGCTAATAACTCCTAAACTATCTAAATATTTCATACAATGATATTTAAATACTCTTAAGAAACGCCAAGTCTGAGGACGTAAACGAGTCCAGATTTTGCAGATCAGAAAACATTGATGTATTCCCAACGCTTTCCTCAGGTTGTGGTTGAACTGTATTTGTACCGTTATGATGTCGTGGTTCCTCAGGAACGGCCTCTTGTCGTGTTGGGATATCTTGAAATAGAGGGGATTTGTTATCATCCAGGTATATACGCCATTCTCTGCCTGAGCTGCAGTGATGAGTTCCCCTGTGCGAGAATCCATATGACGCACAATTAAGTCCTAAATAGTAAGAGCAGCCGCACGGAAGATCAATTCTCCGCCTGCGTATCGGTCTCTTCTTGGCTATTTTGTGTTGGACTTTGATGGGAACTTGAGTACAATGGTTGTGTGATGGTGATGAATTCTGCATTTTTTAGTGCCCAATTTTTGAGTTCCCTATTTTTGTCCTCATCCAAGTACTCTTTATACGATGATGTAGGACCAGGATTGCAGAGGAAGATAGTGGGTATTCCACCTTTAATTTGAATTGGTTTCCCGTACTTCGTGTTGCTTTGCCAGTCTCTTTGGGCCCCCATGAACTCTTTAAAATGCTTTAGATAATGCGGATCAACGTCATCAATGACGTTATACCAAGCATCATTGCTGTAAACCTTTGGGCTTAGGTCCAAATGTCCGCATAGATAATTGTGTTGGCCCAGAGATCTAGCCCACATCGTCTTTCCTGTTCTACTATTGCCTTCTATTACAATACTTATGGGCCTCCAAGGCCGCGCAGCGGCATCCCTGACATTCTCGGAAACCCATTCTTCAAGTTCTTTTGGAACTTGATCGAAAGAAGAAGGAAGAAAAGGACAAACAAAAACCTCTAAAGGAGGTGCAAAAATTCTATCTAAATTCGCATTTAAATTGTGAAATTGTAAAATATAATCTTTAGGGGCTAATTCTCTAATTACATTAAGAGCCTCCGACTTACTTCCTGTGTTAATTGCTTTGGCGTAAGCATCATTGGCTGTTTGTTGACCCCCTCTAGCAGATCTTCCGTCGACCTGAAACTCACCCCATTCGACGGTGTCTCCGTCTTTATCAATATAGGATTTGACGTCGGAGCTTGATTTAGCTCCCTGAATGTTTGGATGGAAATGTGCTGATCTGGTTGGGGATACCAAATCGAAGAATCGTTGATTCGTGCATCTGTATTTCCCCTCGAACTGGATGAGCACATGGAGATGAGGGCTCCCATCTTCGTGCAGTTCTCTGCAGATCTTGATGAATTTTTTATTTGTTGGTGTTTCTAGGTTTTGTAATTGGGTAAGGGTTTCCTCTTTAGTAAGAGAGCATTTGGGATATGTAAGAAAATAATTTTTGGCATTTATTTGGAATTTTCTGGGAGGTGCCATTTGACTTAGTCAATGGGTACCAATTGAGAGGATTTCATTCTACTCAGGGTATCGGTACATTGGTACCTATATATACTTGGTTACCTAAAGGGCATTACTGTAAATTTTTTCAGGTTTCACACGCGTCCCACGTATAGTTAATATT

Gene Information

NCBI Accession YP_001718618.1
Location 105-449
Gene Name V2
Protein Name pre-coat protein
Coding Region ATGTGGGATCCTCTAGTTCATCCTTTCCCTGAAAGCTTGCACGGCTTTAGATGTATGCTTGCCATCAAATATCTTCAAAGCTTACAGGGCAAATATTCTCCGGATACTGTTGGGCATGAGTTTTTGAAAGATTTTATATGTATTTTGCGTAGTAGGAATTATGCCGAAGCGTTCAATAGATACAGTGACGTCGTTGCCAATGTCTATAACACGACGGAGACTCAATTACGGGAGTCAGTTCAGTCTCCCTGCCTCTGTCCCCACTGTCCCAGACATGTCTTACAAGCGAAGGTCGTGGACTTACAGGCCCATGTATCGCAAGCCCAAGATGTACAGAATGTATAG
Protein Sequence MWDPLVHPFPESLHGFRCMLAIKYLQSLQGKYSPDTVGHEFLKDFICILRSRNYAEAFNRYSDVVANVYNTTETQLRESVQSPCLCPHCPRHVLQAKVVDLQAHVSQAQDVQNV

NCBI Accession YP_001718619.1
Location 265-1041
Gene Name V1
Protein Name coat protein
Coding Region ATGCCGAAGCGTTCAATAGATACAGTGACGTCGTTGCCAATGTCTATAACACGACGGAGACTCAATTACGGGAGTCAGTTCAGTCTCCCTGCCTCTGTCCCCACTGTCCCAGACATGTCTTACAAGCGAAGGTCGTGGACTTACAGGCCCATGTATCGCAAGCCCAAGATGTACAGAATGTATAGAAGCCGTGATGTTCCTCGTGGGTGTGAAGGCCCGTGTAAGGTTCAGTCCTATGAGCAGCGCCATGATATAGTTCATGTGGGTAAGGTCATATGTGTTTCTGACGTCACTCGTGGTAACGGGCTTACACATCGTGTTGGAAAGAGGTTTTGTGTAAAGTCTGTGTATGTGTTGGGGAAGGTCTGGATGGATGAGAACATCAAGACTAAAAATCACACTAACACTGTCATGTTTTTTTTAGTGCGTGATAGGAGGCCATATGGGTCTCCCCAGGATTTTGGTCAGGTTTTTAACATGTATGATAATGAGCCTAGTACTGCCACTGTAAAAAATGATAATAGAGATCGATTCCAAGTTCTTCGTAGATTTCAAGCTACTGTAACGGGAGGTCAGTATGCAAGCAAGGAGCAAGCAATAGTTAAGAAGTTCATGAAGATTAACAACCATGTCACTTACAATCATCAGGAGGCTGCGAAGTACGATAACCACACAGAAAATGCTTTGTTGTTATATATGGCATGTACTCATGCTAGTAATCCAGTGTATGCTACGTTGAAGATCAGAATCTATTTCTATGATTCTGTTCAAAATTAA
Protein Sequence MPKRSIDTVTSLPMSITRRRLNYGSQFSLPASVPTVPDMSYKRRSWTYRPMYRKPKMYRMYRSRDVPRGCEGPCKVQSYEQRHDIVHVGKVICVSDVTRGNGLTHRVGKRFCVKSVYVLGKVWMDENIKTKNHTNTVMFFLVRDRRPYGSPQDFGQVFNMYDNEPSTATVKNDNRDRFQVLRRFQATVTGGQYASKEQAIVKKFMKINNHVTYNHQEAAKYDNHTENALLLYMACTHASNPVYATLKIRIYFYDSVQN

NCBI Accession YP_001718620.1
Location 1038-1442
Gene Name C3
Protein Name C3 protein
Coding Region ATGGATTCTCGCACAGGGGAACTCATCACTGCAGCTCAGGCAGAGAATGGCGTATATACCTGGATGATAACAAATCCCCTCTATTTCAAGATATCCCAACACGACAAGAGGCCGTTCCTGAGGAACCACGACATCATAACGGTACAAATACAGTTCAACCACAACCTGAGGAAAGCGTTGGGAATACATCAATGTTTTCTGATCTGCAAAATCTGGACTCGTTTACGTCCTCAGACTTGGCGTTTCTTAAGAGTATTTAAATATCATTGTATGAAATATTTAGATAGTTTAGGAGTTATTAGCATAAACAATGTAATTAGGGCATTCGACTATGTACTATACGATGTACTTGAAAAAACAATCGATGTACAAATTTCTCATATAATAAAATTCAATATTTATTAA
Protein Sequence MDSRTGELITAAQAENGVYTWMITNPLYFKISQHDKRPFLRNHDIITVQIQFNHNLRKALGIHQCFLICKIWTRLRPQTWRFLRVFKYHCMKYLDSLGVISINNVIRAFDYVLYDVLEKTIDVQISHIIKFNIY

NCBI Accession YP_001718621.1
Location 1183-1590
Gene Name C2
Protein Name C2 protein
Coding Region ATGCAGAATTCATCACCATCACACAACCATTGTACTCAAGTTCCCATCAAAGTCCAACACAAAATAGCCAAGAAGAGACCGATACGCAGGCGGAGAATTGATCTTCCGTGCGGCTGCTCTTACTATTTAGGACTTAATTGTGCGTCATATGGATTCTCGCACAGGGGAACTCATCACTGCAGCTCAGGCAGAGAATGGCGTATATACCTGGATGATAACAAATCCCCTCTATTTCAAGATATCCCAACACGACAAGAGGCCGTTCCTGAGGAACCACGACATCATAACGGTACAAATACAGTTCAACCACAACCTGAGGAAAGCGTTGGGAATACATCAATGTTTTCTGATCTGCAAAATCTGGACTCGTTTACGTCCTCAGACTTGGCGTTTCTTAAGAGTATTTAA
Protein Sequence MQNSSPSHNHCTQVPIKVQHKIAKKRPIRRRRIDLPCGCSYYLGLNCASYGFSHRGTHHCSSGREWRIYLDDNKSPLFQDIPTRQEAVPEEPRHHNGTNTVQPQPEESVGNTSMFSDLQNLDSFTSSDLAFLKSI

NCBI Accession YP_001718622.1
Location 1490-2578
Gene Name C1
Protein Name replication-associated protein
Coding Region ATGGCACCTCCCAGAAAATTCCAAATAAATGCCAAAAATTATTTTCTTACATATCCCAAATGCTCTCTTACTAAAGAGGAAACCCTTACCCAATTACAAAACCTAGAAACACCAACAAATAAAAAATTCATCAAGATCTGCAGAGAACTGCACGAAGATGGGAGCCCTCATCTCCATGTGCTCATCCAGTTCGAGGGGAAATACAGATGCACGAATCAACGATTCTTCGATTTGGTATCCCCAACCAGATCAGCACATTTCCATCCAAACATTCAGGGAGCTAAATCAAGCTCCGACGTCAAATCCTATATTGATAAAGACGGAGACACCGTCGAATGGGGTGAGTTTCAGGTCGACGGAAGATCTGCTAGAGGGGGTCAACAAACAGCCAATGATGCTTACGCCAAAGCAATTAACACAGGAAGTAAGTCGGAGGCTCTTAATGTAATTAGAGAATTAGCCCCTAAAGATTATATTTTACAATTTCACAATTTAAATGCGAATTTAGATAGAATTTTTGCACCTCCTTTAGAGGTTTTTGTTTGTCCTTTTCTTCCTTCTTCTTTCGATCAAGTTCCAAAAGAACTTGAAGAATGGGTTTCCGAGAATGTCAGGGATGCCGCTGCGCGGCCTTGGAGGCCCATAAGTATTGTAATAGAAGGCAATAGTAGAACAGGAAAGACGATGTGGGCTAGATCTCTGGGCCAACACAATTATCTATGCGGACATTTGGACCTAAGCCCAAAGGTTTACAGCAATGATGCTTGGTATAACGTCATTGATGACGTTGATCCGCATTATCTAAAGCATTTTAAAGAGTTCATGGGGGCCCAAAGAGACTGGCAAAGCAACACGAAGTACGGGAAACCAATTCAAATTAAAGGTGGAATACCCACTATCTTCCTCTGCAATCCTGGTCCTACATCATCGTATAAAGAGTACTTGGATGAGGACAAAAATAGGGAACTCAAAAATTGGGCACTAAAAAATGCAGAATTCATCACCATCACACAACCATTGTACTCAAGTTCCCATCAAAGTCCAACACAAAATAGCCAAGAAGAGACCGATACGCAGGCGGAGAATTGA
Protein Sequence MAPPRKFQINAKNYFLTYPKCSLTKEETLTQLQNLETPTNKKFIKICRELHEDGSPHLHVLIQFEGKYRCTNQRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYIDKDGDTVEWGEFQVDGRSARGGQQTANDAYAKAINTGSKSEALNVIRELAPKDYILQFHNLNANLDRIFAPPLEVFVCPFLPSSFDQVPKELEEWVSENVRDAAARPWRPISIVIEGNSRTGKTMWARSLGQHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLDEDKNRELKNWALKNAEFITITQPLYSSSHQSPTQNSQEETDTQAEN

NCBI Accession YP_001718623.1
Location 2131-2421
Gene Name C1
Protein Name C4 protein
Coding Region ATGGGAGCCCTCATCTCCATGTGCTCATCCAGTTCGAGGGGAAATACAGATGCACGAATCAACGATTCTTCGATTTGGTATCCCCAACCAGATCAGCACATTTCCATCCAAACATTCAGGGAGCTAAATCAAGCTCCGACGTCAAATCCTATATTGATAAAGACGGAGACACCGTCGAATGGGGTGAGTTTCAGGTCGACGGAAGATCTGCTAGAGGGGGTCAACAAACAGCCAATGATGCTTACGCCAAAGCAATTAACACAGGAAGTAAGTCGGAGGCTCTTAATGTAA
Protein Sequence MGALISMCSSSSRGNTDARINDSSIWYPQPDQHISIQTFRELNQAPTSNPILIKTETPSNGVSFRSTEDLLEGVNKQPMMLTPKQLTQEVSRRLLM