Tomato leaf curl Arusha virus


Basic Information

Genus Begomovirus
NCBI Assembly GCF_000868885.1
Isolate Tanzania:Kilimanjaro
Release date 2015/2/13
Submitter Shih,S.L., Tsai,W.S., Green,S.K., Lee,L.M.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_009030
ACCGGATGGCCGCGCCCCCGAAAAAGCATGGACCCCCTTGAAATATACGGAGCCAATCAGATTGCAGCCTCAATGCTTAGTTAATTTTTTTTTTGTCTTTATATACTTGGCTGTTAAGTATTAAACGCCGTCATTATGTGGGATCCGTTGGTAAATGAGTTTCCGGAGTCTGTTCACGGGTTTCATTGTATGCTTGCCATAAAATATTTGCAGGCCGTTGAAGAGTCTTACGAGCCCAATACATTGGGCCACGATTTAATTAGAGATTTAATCTCTGTAGTTAGAGCCCGGGATTATGTCGAAGCGACCCGCCGATATAATCATTTCCACGCCCGCCTCGAAGGTTCGTCGAAGGCTGAACTTCGACAGCCCTTATTCCAGCCGTGCTGCTGTCCCCATTGTCCCAGGCACAAGCAAACGCAGGTCATGGACGTACAGGCCCATGTATCGCAAGCCCAGAATGTATCGCATGTTCCGTAGTCCAGATGTTCCTCGGGGATGTGAGGGTCCCTGTAAGGTTCAGTCTTATGAGCAGAGGGATGATGTGAAGCACACCGGTATTGTTCGTTGTGTTAGTGATGTAACTAGAGGTAATGGAATTACTCATGGAGTAGGAAAACGGTTCTGCATTAAGTCCATATACATTTTAGGAAAAATATGGATGGATGAGAATATCAAGAAGCAGAATCATACTAATCAGGTCATGTTTTTTTTGGTCCGTGATAGAAGGCCCTATGGCCCAAGCCCAATGGATTTTGGGCAGGTGTTTAACATGTTTGATAATGAGCCCAGTACAGCCACTGTGAAGAATGATCTCCGAGACAGATATCAAGTTTTGCGGAAATTTCATGCAACTGTTGTCGGTGTCCCCTCTGGGATGAAAGAGCAGGCGTTACTTAAAAGATTTTTTAGAATTAATAATCATGTAGTTTATAATCATCAGGAGACTGCTAAGTATGAGAATCATACTGAGAATGCTCTGTTGTTGTATATGGCATGTACTCATGCCTCTAACCCTGTGTATGCTACGTTGAAAATACGTATCTATTTCTATGATTCAGTTGGGAATTAATAAAGTTTGAATTTTATATCATAATTTTGTTCCACCCATAAAGTGCCATTGATTACATCAAACAATACATATTCTATTGCTCTAATTACATTATTAATTGAAATTACACCAAGATTGTCTAAATATTTCCTAACTTGAGTCTTAAAGACTCTTAAGAAAAGACCAGTCTGAGGCTGTAAGGTTGTCCAGATCTTGAAGGCCATGAAACACTTGTGAATCCCCAGTTCCTTCCTTAGGTTGTGGTTGAATCGGATTTGTACTGTGATGATGTCGTGGTTGTAGTTGAACGGTCTCTTTGAGTGTTCCGTGATGCTGAAATATAGGGGATTGGCGATTTCCCAGGTATAGACGCCACTCTGTGCCTGATGCACAGTGATGAGTTCCCCGGTGCGTAAATCCATGGTTGCGACAGTTGAGCGACAAGTAGTACGAGCACCCGCAATTAAGGTCTATCCTCTTCCTCCGCTGAAGCCTCTGTTTGGCTGCTCTGTGTTGGACCTTGATGGGAACTTGAGTACAATGGCTGTTGGATGGTGAAGAAGACCGCATTTTTAATTGCCCAGGCCTTTAATGGTGCGTTCTTTTCCTCATCCAAGTACTCTTTATATGATGAAGTGGGTCCTGGATTGCAGAGGAAGATTGCCGGGATACCTCCTTTAATTTGAATTGGTTTCCCGTACTTTGTGTTGCTTTGCCAGTCCCTTTGTGCGCCCATGAATTCTTTAAAGTGCTTTAGATAATGAGGATCGACGTCATCAATGACGTTGTACCAAGCATTATTACTGTACACCTTTGGACTGAGGTCAAGATGACCACACAAATAATTGTGTGGTCCTAATGACCTAGCCCACATTGTCTTGCCGGTACGACTATCCCCTTCAATCACAATACTCATGGGTCTCAATGGCCGCGCAGCGGCAGTGACAACATTCTGTGCCGCCCACTCTTCAAGTTCCTCTGGAACTTGATCGAACGAAGAACATAAGAAAGGTGAAACATATTCCTCCAACGGAGGTGTAAAAATCCTATCTAAATTACTTTTCAAATTATGATACTGAAAAATAAAATCTTTAGGGAGTTTCTCCCTAATAATAGCCAGAGCGGCTTCAGCGGACCCTGCGTTTAATGCCTCGGCGCATGCGTCGTTAGCATTATGGCAGCCTCCTCTAGCACTTCTGCCGTCGATCTGGAATTCCCCCCATTCGAGTGCGTCTCCATCCTTGTCGATGTAGGACTTGACGTCGGAGCTTGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGTTGACCTGGTTGGGGATACCAGGTCGAAGAATCTGTTATTTTTGCAGTTGAATTTTCCTTCGAACTGAATAAGCACGTGGAGATGAGGCTCCCCATCTTCGTGTAGTTCTCTGCAAATTTTGATGAATTTTTTATTTGTTGGAGTATCAGTATTTAATAATTGAGATAGTGCTTCTTCTTTATTTAGAGAGCATTTGGGATAAGTGAGGAAATAATTTTTGGAATTTATTTGGAAACGCTTAGGAGGAGGCATGTTGGTCAATGGGTACCGATTGACTCACTTGGAATGCTTCTCCTGGTATATCGGTACCCAATATATAGTGGGTACCGAATGCCAGTATTGTAATAACAAAAAGTTACTCTACCCTTATTGTCAAATTGTTAAAGCGGTCATCCGTCTAATATT

Gene Information

NCBI Accession YP_001040008.1
Location 136-480
Gene Name V2
Protein Name pre-coat protein
Coding Region ATGTGGGATCCGTTGGTAAATGAGTTTCCGGAGTCTGTTCACGGGTTTCATTGTATGCTTGCCATAAAATATTTGCAGGCCGTTGAAGAGTCTTACGAGCCCAATACATTGGGCCACGATTTAATTAGAGATTTAATCTCTGTAGTTAGAGCCCGGGATTATGTCGAAGCGACCCGCCGATATAATCATTTCCACGCCCGCCTCGAAGGTTCGTCGAAGGCTGAACTTCGACAGCCCTTATTCCAGCCGTGCTGCTGTCCCCATTGTCCCAGGCACAAGCAAACGCAGGTCATGGACGTACAGGCCCATGTATCGCAAGCCCAGAATGTATCGCATGTTCCGTAG
Protein Sequence MWDPLVNEFPESVHGFHCMLAIKYLQAVEESYEPNTLGHDLIRDLISVVRARDYVEATRRYNHFHARLEGSSKAELRQPLFQPCCCPHCPRHKQTQVMDVQAHVSQAQNVSHVP

NCBI Accession YP_001040009.1
Location 296-1072
Gene Name V1
Protein Name coat protein
Coding Region ATGTCGAAGCGACCCGCCGATATAATCATTTCCACGCCCGCCTCGAAGGTTCGTCGAAGGCTGAACTTCGACAGCCCTTATTCCAGCCGTGCTGCTGTCCCCATTGTCCCAGGCACAAGCAAACGCAGGTCATGGACGTACAGGCCCATGTATCGCAAGCCCAGAATGTATCGCATGTTCCGTAGTCCAGATGTTCCTCGGGGATGTGAGGGTCCCTGTAAGGTTCAGTCTTATGAGCAGAGGGATGATGTGAAGCACACCGGTATTGTTCGTTGTGTTAGTGATGTAACTAGAGGTAATGGAATTACTCATGGAGTAGGAAAACGGTTCTGCATTAAGTCCATATACATTTTAGGAAAAATATGGATGGATGAGAATATCAAGAAGCAGAATCATACTAATCAGGTCATGTTTTTTTTGGTCCGTGATAGAAGGCCCTATGGCCCAAGCCCAATGGATTTTGGGCAGGTGTTTAACATGTTTGATAATGAGCCCAGTACAGCCACTGTGAAGAATGATCTCCGAGACAGATATCAAGTTTTGCGGAAATTTCATGCAACTGTTGTCGGTGTCCCCTCTGGGATGAAAGAGCAGGCGTTACTTAAAAGATTTTTTAGAATTAATAATCATGTAGTTTATAATCATCAGGAGACTGCTAAGTATGAGAATCATACTGAGAATGCTCTGTTGTTGTATATGGCATGTACTCATGCCTCTAACCCTGTGTATGCTACGTTGAAAATACGTATCTATTTCTATGATTCAGTTGGGAATTAA
Protein Sequence MSKRPADIIISTPASKVRRRLNFDSPYSSRAAVPIVPGTSKRRSWTYRPMYRKPRMYRMFRSPDVPRGCEGPCKVQSYEQRDDVKHTGIVRCVSDVTRGNGITHGVGKRFCIKSIYILGKIWMDENIKKQNHTNQVMFFLVRDRRPYGPSPMDFGQVFNMFDNEPSTATVKNDLRDRYQVLRKFHATVVGVPSGMKEQALLKRFFRINNHVVYNHQETAKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSVGN

NCBI Accession YP_001040010.1
Location 1069-1473
Gene Name C3
Protein Name replication enhancement protein
Coding Region ATGGATTTACGCACCGGGGAACTCATCACTGTGCATCAGGCACAGAGTGGCGTCTATACCTGGGAAATCGCCAATCCCCTATATTTCAGCATCACGGAACACTCAAAGAGACCGTTCAACTACAACCACGACATCATCACAGTACAAATCCGATTCAACCACAACCTAAGGAAGGAACTGGGGATTCACAAGTGTTTCATGGCCTTCAAGATCTGGACAACCTTACAGCCTCAGACTGGTCTTTTCTTAAGAGTCTTTAAGACTCAAGTTAGGAAATATTTAGACAATCTTGGTGTAATTTCAATTAATAATGTAATTAGAGCAATAGAATATGTATTGTTTGATGTAATCAATGGCACTTTATGGGTGGAACAAAATTATGATATAAAATTCAAACTTTATTAA
Protein Sequence MDLRTGELITVHQAQSGVYTWEIANPLYFSITEHSKRPFNYNHDIITVQIRFNHNLRKELGIHKCFMAFKIWTTLQPQTGLFLRVFKTQVRKYLDNLGVISINNVIRAIEYVLFDVINGTLWVEQNYDIKFKLY

NCBI Accession YP_001040011.1
Location 1214-1621
Gene Name C2
Protein Name transcriptional activation protein
Coding Region ATGCGGTCTTCTTCACCATCCAACAGCCATTGTACTCAAGTTCCCATCAAGGTCCAACACAGAGCAGCCAAACAGAGGCTTCAGCGGAGGAAGAGGATAGACCTTAATTGCGGGTGCTCGTACTACTTGTCGCTCAACTGTCGCAACCATGGATTTACGCACCGGGGAACTCATCACTGTGCATCAGGCACAGAGTGGCGTCTATACCTGGGAAATCGCCAATCCCCTATATTTCAGCATCACGGAACACTCAAAGAGACCGTTCAACTACAACCACGACATCATCACAGTACAAATCCGATTCAACCACAACCTAAGGAAGGAACTGGGGATTCACAAGTGTTTCATGGCCTTCAAGATCTGGACAACCTTACAGCCTCAGACTGGTCTTTTCTTAAGAGTCTTTAA
Protein Sequence MRSSSPSNSHCTQVPIKVQHRAAKQRLQRRKRIDLNCGCSYYLSLNCRNHGFTHRGTHHCASGTEWRLYLGNRQSPIFQHHGTLKETVQLQPRHHHSTNPIQPQPKEGTGDSQVFHGLQDLDNLTASDWSFLKSL

NCBI Accession YP_001040012.1
Location 1515-2609
Gene Name C1
Protein Name replication-associated protein
Coding Region ATGCCTCCTCCTAAGCGTTTCCAAATAAATTCCAAAAATTATTTCCTCACTTATCCCAAATGCTCTCTAAATAAAGAAGAAGCACTATCTCAATTATTAAATACTGATACTCCAACAAATAAAAAATTCATCAAAATTTGCAGAGAACTACACGAAGATGGGGAGCCTCATCTCCACGTGCTTATTCAGTTCGAAGGAAAATTCAACTGCAAAAATAACAGATTCTTCGACCTGGTATCCCCAACCAGGTCAACACATTTCCATCCGAACATTCAGGGAGCTAAATCAAGCTCCGACGTCAAGTCCTACATCGACAAGGATGGAGACGCACTCGAATGGGGGGAATTCCAGATCGACGGCAGAAGTGCTAGAGGAGGCTGCCATAATGCTAACGACGCATGCGCCGAGGCATTAAACGCAGGGTCCGCTGAAGCCGCTCTGGCTATTATTAGGGAGAAACTCCCTAAAGATTTTATTTTTCAGTATCATAATTTGAAAAGTAATTTAGATAGGATTTTTACACCTCCGTTGGAGGAATATGTTTCACCTTTCTTATGTTCTTCGTTCGATCAAGTTCCAGAGGAACTTGAAGAGTGGGCGGCACAGAATGTTGTCACTGCCGCTGCGCGGCCATTGAGACCCATGAGTATTGTGATTGAAGGGGATAGTCGTACCGGCAAGACAATGTGGGCTAGGTCATTAGGACCACACAATTATTTGTGTGGTCATCTTGACCTCAGTCCAAAGGTGTACAGTAATAATGCTTGGTACAACGTCATTGATGACGTCGATCCTCATTATCTAAAGCACTTTAAAGAATTCATGGGCGCACAAAGGGACTGGCAAAGCAACACAAAGTACGGGAAACCAATTCAAATTAAAGGAGGTATCCCGGCAATCTTCCTCTGCAATCCAGGACCCACTTCATCATATAAAGAGTACTTGGATGAGGAAAAGAACGCACCATTAAAGGCCTGGGCAATTAAAAATGCGGTCTTCTTCACCATCCAACAGCCATTGTACTCAAGTTCCCATCAAGGTCCAACACAGAGCAGCCAAACAGAGGCTTCAGCGGAGGAAGAGGATAGACCTTAA
Protein Sequence MPPPKRFQINSKNYFLTYPKCSLNKEEALSQLLNTDTPTNKKFIKICRELHEDGEPHLHVLIQFEGKFNCKNNRFFDLVSPTRSTHFHPNIQGAKSSSDVKSYIDKDGDALEWGEFQIDGRSARGGCHNANDACAEALNAGSAEAALAIIREKLPKDFIFQYHNLKSNLDRIFTPPLEEYVSPFLCSSFDQVPEELEEWAAQNVVTAAARPLRPMSIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNNAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPAIFLCNPGPTSSYKEYLDEEKNAPLKAWAIKNAVFFTIQQPLYSSSHQGPTQSSQTEASAEEEDRP

NCBI Accession YP_001040013.1
Location 2195-2452
Gene Name C4
Protein Name C4 protein
Coding Region ATGGGGAGCCTCATCTCCACGTGCTTATTCAGTTCGAAGGAAAATTCAACTGCAAAAATAACAGATTCTTCGACCTGGTATCCCCAACCAGGTCAACACATTTCCATCCGAACATTCAGGGAGCTAAATCAAGCTCCGACGTCAAGTCCTACATCGACAAGGATGGAGACGCACTCGAATGGGGGGAATTCCAGATCGACGGCAGAAGTGCTAGAGGAGGCTGCCATAATGCTAACGACGCATGCGCCGAGGCATTAA
Protein Sequence MGSLISTCLFSSKENSTAKITDSSTWYPQPGQHISIRTFRELNQAPTSSPTSTRMETHSNGGNSRSTAEVLEEAAIMLTTHAPRH