Genus | Begomovirus |
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NCBI Assembly | GCF_003029065.1 |
Isolate | Cuba: open field near Havana |
Release date | 2018/8/26 |
Submitter | Fuentes,A., Carlos,N., Ruiz,Y., Callard,D., Sanchez,Y., Ochagavia,M.E., Seguin,J., Malpica-Lopez,N., Hohn,T., Lecca,M.R., Perez,R., Doreste,V., Rehrauer,H., Farinelli,L., Pujol,M., Pooggin,M.M. |
Host | |
Download | Genome |GFF3 |PEP |CDS |
NCBI Accession | YP_009508305.1 |
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Location | 149-499 |
Gene Name | V2 |
Protein Name | pre-coat protein V2 |
Coding Region | ATGTGGGATCCACTTCTAAATGAATTTCCTGAATCTGTTCACGGATTTCGTTGTATGTTAGCTATTAAATATTTGCAGTCCGTTGAGGAAACTTACGAGCCCAATACATTGGGCCACGATTTAATTAGGGATCTTATATCTGTTGTAAGGGCCCGTGACTATGTCGAAGCGACCAGGCGATATAATCATTTCCACGCCCGTCTCGAAGGTTCGCCGAAGGCTGAACTTCGACAGCCCATACAGCAACCGTGCTGCTGTCCCCATTGTCCAAGGCACAAACAAGCGACGATCATGGACGTACAGGCCCATGTACCGAAAGCCCAGAATATACAGAATGTATCGAAGCCCTGA |
Protein Sequence | MWDPLLNEFPESVHGFRCMLAIKYLQSVEETYEPNTLGHDLIRDLISVVRARDYVEATRRYNHFHARLEGSPKAELRQPIQQPCCCPHCPRHKQATIMDVQAHVPKAQNIQNVSKP |
NCBI Accession | YP_009508306.1 |
---|---|
Location | 309-1085 |
Gene Name | V1 |
Protein Name | coat protein |
Coding Region | ATGTCGAAGCGACCAGGCGATATAATCATTTCCACGCCCGTCTCGAAGGTTCGCCGAAGGCTGAACTTCGACAGCCCATACAGCAACCGTGCTGCTGTCCCCATTGTCCAAGGCACAAACAAGCGACGATCATGGACGTACAGGCCCATGTACCGAAAGCCCAGAATATACAGAATGTATCGAAGCCCTGATGTTCCCCGTGGATGTGAAGGCCCATGTAAAGTCCAGTCTTATGAGCAGCGGGATGATATTAAGCACACTGGTGTTGTTCGTTGTGTTAGTGATGTTACTCGTGGATCTGGAATTACTCACAGAGTCGGTAAGAGGTTCTGTGTTAAATCGATATATTTTTTAGGTAAAGTCTGGATGGATGAAAATATCAAGAAGCAGAATCACACTAATCAGGTCATGTTCTTTTTGGTCCGTGATAGAAGGCCCTATGGAAGCAGTCCAATGGATTTTGGACAGGTTTTTAATATGTTCGATAATGAGCCCAGTACCGCAACTGTGAAGAATGATTTGCGTGATAGGTTTCAAGTGATGAGGAAATTTCATGCTACAGTTATTGGTGGGCCCTCTGGAATGAAAGAACAGGCATTAGTTAAGAGATTTTTTAAAATTAACAGTCATGTAACGTATAATCATCAGGAGGCAGCCAAGTACGAGAACCATACTGAAAACGCCTTGTTATTGTATATGGCATGTACGCATGCCTCTAATCCAGTGTATGCAACTATGAAAATACGCATCTATTTCTATGATTCCATCATGAATTAA |
Protein Sequence | MSKRPGDIIISTPVSKVRRRLNFDSPYSNRAAVPIVQGTNKRRSWTYRPMYRKPRIYRMYRSPDVPRGCEGPCKVQSYEQRDDIKHTGVVRCVSDVTRGSGITHRVGKRFCVKSIYFLGKVWMDENIKKQNHTNQVMFFLVRDRRPYGSSPMDFGQVFNMFDNEPSTATVKNDLRDRFQVMRKFHATVIGGPSGMKEQALVKRFFKINSHVTYNHQEAAKYENHTENALLLYMACTHASNPVYATMKIRIYFYDSIMN |
NCBI Accession | YP_009508307.1 |
---|---|
Location | 1082-1480 |
Gene Name | C3 |
Protein Name | replication enhancer |
Coding Region | ATGGATTCACGCACAGGGGAACTCATCACTGCACATCAGGCGGAGAATGGCGTGTATATCTGGGAGATAGAAAATCCCCTCTATTTCAGGATATACAGAGTAGAGGACCCGTTGTACACCAAGACAAGGGTGTACCACGTACAGATACGGTTCAATCACAACCTGAGGAGAGCGTTGCATCTCCACAAAGCCTACCTGAACTTCCAAGTCTGGACGACATCGACGACAGCTTCTGGGTCAACTTATTTAGCTAGGTTTAGGCACTTAGTCAACCTGTACCTAGATCAGTTAGGCGTGATTTCCATTAACAATGTAATTAGAGCTGTTCGTTTCGCAACAGACAGAGCGTATGTAAATTATGTACTGGAAGATCACTCAATAAAATTCAAATTTTATTAA |
Protein Sequence | MDSRTGELITAHQAENGVYIWEIENPLYFRIYRVEDPLYTKTRVYHVQIRFNHNLRRALHLHKAYLNFQVWTTSTTASGSTYLARFRHLVNLYLDQLGVISINNVIRAVRFATDRAYVNYVLEDHSIKFKFY |
NCBI Accession | YP_009508308.1 |
---|---|
Location | 1227-1616 |
Gene Name | C2 |
Protein Name | transcriptional transactivator |
Coding Region | ATGCGATCTTCATCACCCTCACAGCCCCCCTCTATCAAGAAGACACACAGGCAGGCCAAGAGGAGGGCCATCAGGAGGAGACGGATTGATCTGGAGTGCGGGTGCTCCATCTACTTCCACATAGGCTGTACGGGACATGGATTCACGCACAGGGGAACTCATCACTGCACATCAGGCGGAGAATGGCGTGTATATCTGGGAGATAGAAAATCCCCTCTATTTCAGGATATACAGAGTAGAGGACCCGTTGTACACCAAGACAAGGGTGTACCACGTACAGATACGGTTCAATCACAACCTGAGGAGAGCGTTGCATCTCCACAAAGCCTACCTGAACTTCCAAGTCTGGACGACATCGACGACAGCTTCTGGGTCAACTTATTTAGCTAG |
Protein Sequence | MRSSSPSQPPSIKKTHRQAKRRAIRRRRIDLECGCSIYFHIGCTGHGFTHRGTHHCTSGGEWRVYLGDRKSPLFQDIQSRGPVVHQDKGVPRTDTVQSQPEESVASPQSLPELPSLDDIDDSFWVNLFS |
NCBI Accession | YP_009508309.1 |
---|---|
Location | 1528-2613 |
Gene Name | C1 |
Protein Name | replication initiator protein |
Coding Region | ATGCCACGAAAGGGTTCTTTCTCAGTTAAAGCCAAAAACTATTTCCTCACTTATCCGCAGTGTTCCTTAACCAAAGAGGAGACACTTTCCCAATTACAAAACCTAAAAACTCCGGTGAACAAGAAGTTCATCAAAATCTGCAAAGAGCTCCACGAAAATGGGGAGCCTCATCTCCATGTGCTCATCCAGTTCGAGGGAAAGTACAACTGCACGAATAACAGATTCTTCGATCTGGTGTCCCCAACCAGGTCAGCACATTTCCATCCGAACATACAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTATGTCGAGAAGGACGGGGACACAATCGAATGGGGAGTGTTCCAGGTCGACGGAAGAAGTGCTCGGGGCGGTCAGCAAACAGCTAATGACGCAGCCGCCGAGGCATTAAACTCTGGAACAAAGGAGGCGGCCCTGAAAATCATCAGGGAGAAGCTACCGGAGAAGTATCTCTTTCAGTTCCACAACCTATCCAGTAACCTAGATAGGATTTTCAGTGAGGCTCCGGAGCCATGGTCTCCTCCGTTTCCCCTCTCCTCTTTCACTAACGTTCCTGACGAGATGCAAGAGTGGGCGGACGGTTATTTTGGGAGGGGTTCCGCTGCGCGGCCAGAAAGACCATTAAGTCTAATAGTCGAAGGTGACTCGAGGACAGGGAAGACGATGTGGGCTCGTGCGTTAGGCCCACATAACTATCTCAGTGGACATCTGGACTTCAATACTCGAGTCTATTCGAACGAAGTGGAGTATAACGTCATTGATGACGTCGCACCGCACTATCTAAAGCTAAAGCACTGGAAAGAACTTCTGGGGGCCCAGAAGGACTGGCAGTCAAATTGCAAATACGGCAAGCCAGTTCAAATTAAAGGAGGTATCCCTTCAATCGTGCTTTGCAATCCGGGTGAGGGTGCCAGCTATAAAGAGTTCCTAGACAAAGAGGAAAACATAGGTCTCAGGAACTGGACCATCAAGAATGCGATCTTCATCACCCTCACAGCCCCCCTCTATCAAGAAGACACACAGGCAGGCCAAGAGGAGGGCCATCAGGAGGAGACGGATTGA |
Protein Sequence | MPRKGSFSVKAKNYFLTYPQCSLTKEETLSQLQNLKTPVNKKFIKICKELHENGEPHLHVLIQFEGKYNCTNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYVEKDGDTIEWGVFQVDGRSARGGQQTANDAAAEALNSGTKEAALKIIREKLPEKYLFQFHNLSSNLDRIFSEAPEPWSPPFPLSSFTNVPDEMQEWADGYFGRGSAARPERPLSLIVEGDSRTGKTMWARALGPHNYLSGHLDFNTRVYSNEVEYNVIDDVAPHYLKLKHWKELLGAQKDWQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKEFLDKEENIGLRNWTIKNAIFITLTAPLYQEDTQAGQEEGHQEETD |
NCBI Accession | YP_009508310.1 |
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Location | 2199-2456 |
Gene Name | C4 |
Protein Name | C4 |
Coding Region | ATGGGGAGCCTCATCTCCATGTGCTCATCCAGTTCGAGGGAAAGTACAACTGCACGAATAACAGATTCTTCGATCTGGTGTCCCCAACCAGGTCAGCACATTTCCATCCGAACATACAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTATGTCGAGAAGGACGGGGACACAATCGAATGGGGAGTGTTCCAGGTCGACGGAAGAAGTGCTCGGGGCGGTCAGCAAACAGCTAATGACGCAGCCGCCGAGGCATTAA |
Protein Sequence | MGSLISMCSSSSRESTTARITDSSIWCPQPGQHISIRTYRELNPAPTSSPMSRRTGTQSNGECSRSTEEVLGAVSKQLMTQPPRH |