Tomato interveinal chlorosis virus
Basic Information
Genus |
Begomovirus
|
NCBI Assembly |
GCF_002823985.1 |
Isolate |
Brazil: Pernambuco |
Release date |
2018/8/25 |
Submitter |
Albuquerque,L.C., Varsani,A., Fernandes,F.R., Pinheiro,B., Martin,D.P., de Tarso Oliveira Ferreira,P., Lemos,T.O., Inoue-Nagata,A.K., Martins,D.P., Ferreira,P.T.O. |
Host |
|
Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGAAAAATTTTGGACTTGGGCCGCTTTAGTTGGGCCCGCTCTCTTTATTGAATGAAAGTAATGTGTGGCCCAACCATATTACGTCTGACGAGTTAAGATATTTGTAACGACTTAGCGCCCAAGTTTAGCAACGGCTATATATTGAACGTGCAATTGTCAGTAACTTTAATTCAAAATGCCTAAGCGCGATGCCCCATGGCGCCACATGGCAGGTACGTCTAAGATTAGCCGGGTCGCTAATTATTCTCCTCGTGCAGGAGTTGGGCCACGATCCAACAAGGCCTCTGAATGGGTTAACAGGCCTATGTACAGGAAGCCCAGGATATATCGGATGTACAGGACCCCCGATGTTCCAAGAGGCTGTGAAGGCCCATGTAAAGTCCAGTCGTATGAGCAGCGTCACGATATATCCCATGTTGGTAAGGTGATGTGCGTCTCCGACGTGACAAGAGGTAATGGTATTACCCACCGTGTAGGGAAGCGTTTTTGTGTTAAGTCCGTTTATATTTTAGGTAAGGTATGGATGGACGAGAATATCAAGTTGAAGAACCACACCAACAGTGTTATGTTCTGGCTGGTCAGAGACCGTAGACCCTATGGGACTCCTATGGACTTCGGCCAAGTTTTTAACATGTTTGACAATGAGCCCAGTACTGCCACGGTCAAGAACGATCTTCGTGATCGTTACCAAGTTATGCATAAATTCTATGCTAAGGTGACAGGTGGACAATACGCAAGCAATGAACAAGCGCTGGTCAAGCGTTTCTGGAGGGTCAACAATCACGTGGTGTACAATCATCAAGAAGCCGGGAAATACGAGAATCATACGGAGAACGCACTATTATTGTATATGGCATGTACTCATGCCTCGAACCCTGTGTATGCGACTTTAAAAATTCGGATCTATTTCTATGATTCGATAATAAATTAATAAATGTTGAATTTTATTGAATGATTCTCTAGTACATCATGAACATATGATTTGTCTGTTGCGAAACGAACAGCTCTAATTACATTATTAACTGAAATAACGCCTAATTGATCTAGATACAACTGAACAAGAAATTTAAATCTACTTAAATATCTCATCCCAGAAGCTCTCAGGGATGTCGTCCAAACTTGGAAGTTGAGATAAGCCTTGTGGAGACCCAACACTCTCCGCAGGTTGTGGTTGAACCGTATCTGGACGTGGTAGACTCTCGTCCTCGTGTAGAGTAGGTCCTCCACATTGTACATCTTGAAATATAGGGGATTTGATATCTCCCAGGTATACACGCCATTCTCTGCCTGATGTGCAGTGATGAGTTCCCCTGTGCGTGAATCCATGCCCTGCGCAGTGGATGTGAACGTATATGGAGCACCCGCACTGTAGATCAATTCGTCTTCGTCGTGTTGCCCTCTTTCTTTTAGCTGCCCGATGTTGAACTTTGATAGAGGGGGGAGTTGAGAAAGACGAATTGCGCATTGTGCTTTGTCCAATTATTTAATGCTGAGTTTTCCTCTTTGTCGAGGAAAGATTTATAACTGGCCCCCTCGCCAGGATTGCAAAGCACGATGCATGGGATACCTCCTTTAATTTGAACTGGCTTTCCGTATTTGCAGTTTGATTGCCAGTCCCTTTGGGCCCCGATAAGTTCTTTCCAGTGCTTTAACTTTAGATAGTGCGGTGCGACATCATCAATGACGTTATACTGCACATCGTTTGAATACACCTTTGAATTGAAATCGAGGTGACCGCTCAAGTAATTGTGGGACCCTAATGCACGTGCCCACATGGTCTTCCCTGTCCTTGAATCACCCTCGATTATTATACTGATAGGCCTCTCCGGCCGCGCAGCGGCATCCCTTCCGAAATAGTCATGTGCCCAAGATTGCATCTCGACAGGCACGTTAGTGAACGACGAGAGGGGAAACGGAGGAACCCACGGTTCTGGAGCCTTTGCAAATATACGCTCTAAATTCGAACGAATATTATGATGCTGAAGAACATAATCTTTTGGCTGTTCCTCCTTTAATATATTGAGGGCCTCCATGACTGATCCTGCGTTAAGAACCTTGGCATACGTGTCGTTGGCAGATTGCTGACCTCCTCTAGCTGATCTTCCATCGATCTGGAAAACTCCATGATCAACGAAGTCTCCGTCTTTCTCCACGTATGCCTTGACATCTGACGAGCTCTTAGCTGCCTGAATGTTCGGATGGAAATGTGCTGACCTTGTTGGGGATACAAGGTCGAACAATCGTTCGTTCGTGCACTGGTATTTTCCTTCGAACTGTATGAGGACGTGCAGATGAGGTTGCCCATCTTCGTGTAATTCTCTCGCAACACGAACGAATAGTTTATTGACTGGTATTGTTAAGGCTAAGAGTTGGGAAAGTGCTTCTTCTTTCGAAAGAGAACACTTAGGATAAGTGAGGAAATAGTTTTTGGCATTTAAACGAAATCGTTTCGGGAGTGGCATATTTGTAAATAAGAGCTTGTACACCGATTGGGAGCTCTCACAAAGTCCGAATGAATCGGTGTATTGGTGTACAATATATACTAGAACCCTCAATAGAACTTTCAATCTCGATCGAACACGTGGCGGCCATCCGTTATAATATT
Gene Information
NCBI Accession
|
YP_009506521.1
|
Location
|
188-943 |
Protein Name
|
V1 |
Coding Region
|
ATGCCTAAGCGCGATGCCCCATGGCGCCACATGGCAGGTACGTCTAAGATTAGCCGGGTCGCTAATTATTCTCCTCGTGCAGGAGTTGGGCCACGATCCAACAAGGCCTCTGAATGGGTTAACAGGCCTATGTACAGGAAGCCCAGGATATATCGGATGTACAGGACCCCCGATGTTCCAAGAGGCTGTGAAGGCCCATGTAAAGTCCAGTCGTATGAGCAGCGTCACGATATATCCCATGTTGGTAAGGTGATGTGCGTCTCCGACGTGACAAGAGGTAATGGTATTACCCACCGTGTAGGGAAGCGTTTTTGTGTTAAGTCCGTTTATATTTTAGGTAAGGTATGGATGGACGAGAATATCAAGTTGAAGAACCACACCAACAGTGTTATGTTCTGGCTGGTCAGAGACCGTAGACCCTATGGGACTCCTATGGACTTCGGCCAAGTTTTTAACATGTTTGACAATGAGCCCAGTACTGCCACGGTCAAGAACGATCTTCGTGATCGTTACCAAGTTATGCATAAATTCTATGCTAAGGTGACAGGTGGACAATACGCAAGCAATGAACAAGCGCTGGTCAAGCGTTTCTGGAGGGTCAACAATCACGTGGTGTACAATCATCAAGAAGCCGGGAAATACGAGAATCATACGGAGAACGCACTATTATTGTATATGGCATGTACTCATGCCTCGAACCCTGTGTATGCGACTTTAAAAATTCGGATCTATTTCTATGATTCGATAATAAATTAA |
Protein Sequence
|
MPKRDAPWRHMAGTSKISRVANYSPRAGVGPRSNKASEWVNRPMYRKPRIYRMYRTPDVPRGCEGPCKVQSYEQRHDISHVGKVMCVSDVTRGNGITHRVGKRFCVKSVYILGKVWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATVKNDLRDRYQVMHKFYAKVTGGQYASNEQALVKRFWRVNNHVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSIIN |
NCBI Accession
|
YP_009506522.1
|
Location
|
940-1338 |
Protein Name
|
C3 |
Coding Region
|
ATGGATTCACGCACAGGGGAACTCATCACTGCACATCAGGCAGAGAATGGCGTGTATACCTGGGAGATATCAAATCCCCTATATTTCAAGATGTACAATGTGGAGGACCTACTCTACACGAGGACGAGAGTCTACCACGTCCAGATACGGTTCAACCACAACCTGCGGAGAGTGTTGGGTCTCCACAAGGCTTATCTCAACTTCCAAGTTTGGACGACATCCCTGAGAGCTTCTGGGATGAGATATTTAAGTAGATTTAAATTTCTTGTTCAGTTGTATCTAGATCAATTAGGCGTTATTTCAGTTAATAATGTAATTAGAGCTGTTCGTTTCGCAACAGACAAATCATATGTTCATGATGTACTAGAGAATCATTCAATAAAATTCAACATTTATTAA |
Protein Sequence
|
MDSRTGELITAHQAENGVYTWEISNPLYFKMYNVEDLLYTRTRVYHVQIRFNHNLRRVLGLHKAYLNFQVWTTSLRASGMRYLSRFKFLVQLYLDQLGVISVNNVIRAVRFATDKSYVHDVLENHSIKFNIY |
NCBI Accession
|
YP_009506523.1
|
Location
|
1085-1477 |
Protein Name
|
C2 |
Coding Region
|
ATGCGCAATTCGTCTTTCTCAACTCCCCCCTCTATCAAAGTTCAACATCGGGCAGCTAAAAGAAAGAGGGCAACACGACGAAGACGAATTGATCTACAGTGCGGGTGCTCCATATACGTTCACATCCACTGCGCAGGGCATGGATTCACGCACAGGGGAACTCATCACTGCACATCAGGCAGAGAATGGCGTGTATACCTGGGAGATATCAAATCCCCTATATTTCAAGATGTACAATGTGGAGGACCTACTCTACACGAGGACGAGAGTCTACCACGTCCAGATACGGTTCAACCACAACCTGCGGAGAGTGTTGGGTCTCCACAAGGCTTATCTCAACTTCCAAGTTTGGACGACATCCCTGAGAGCTTCTGGGATGAGATATTTAAGTAG |
Protein Sequence
|
MRNSSFSTPPSIKVQHRAAKRKRATRRRRIDLQCGCSIYVHIHCAGHGFTHRGTHHCTSGREWRVYLGDIKSPIFQDVQCGGPTLHEDESLPRPDTVQPQPAESVGSPQGLSQLPSLDDIPESFWDEIFK |
NCBI Accession
|
YP_009506524.1
|
Location
|
1419-2474 |
Protein Name
|
C1 |
Coding Region
|
ATGCCACTCCCGAAACGATTTCGTTTAAATGCCAAAAACTATTTCCTCACTTATCCTAAGTGTTCTCTTTCGAAAGAAGAAGCACTTTCCCAACTCTTAGCCTTAACAATACCAGTCAATAAACTATTCGTTCGTGTTGCGAGAGAATTACACGAAGATGGGCAACCTCATCTGCACGTCCTCATACAGTTCGAAGGAAAATACCAGTGCACGAACGAACGATTGTTCGACCTTGTATCCCCAACAAGGTCAGCACATTTCCATCCGAACATTCAGGCAGCTAAGAGCTCGTCAGATGTCAAGGCATACGTGGAGAAAGACGGAGACTTCGTTGATCATGGAGTTTTCCAGATCGATGGAAGATCAGCTAGAGGAGGTCAGCAATCTGCCAACGACACGTATGCCAAGGTTCTTAACGCAGGATCAGTCATGGAGGCCCTCAATATATTAAAGGAGGAACAGCCAAAAGATTATGTTCTTCAGCATCATAATATTCGTTCGAATTTAGAGCGTATATTTGCAAAGGCTCCAGAACCGTGGGTTCCTCCGTTTCCCCTCTCGTCGTTCACTAACGTGCCTGTCGAGATGCAATCTTGGGCACATGACTATTTCGGAAGGGATGCCGCTGCGCGGCCGGAGAGGCCTATCAGTATAATAATCGAGGGTGATTCAAGGACAGGGAAGACCATGTGGGCACGTGCATTAGGGTCCCACAATTACTTGAGCGGTCACCTCGATTTCAATTCAAAGGTGTATTCAAACGATGTGCAGTATAACGTCATTGATGATGTCGCACCGCACTATCTAAAGTTAAAGCACTGGAAAGAACTTATCGGGGCCCAAAGGGACTGGCAATCAAACTGCAAATACGGAAAGCCAGTTCAAATTAAAGGAGGTATCCCATGCATCGTGCTTTGCAATCCTGGCGAGGGGGCCAGTTATAAATCTTTCCTCGACAAAGAGGAAAACTCAGCATTAAATAATTGGACAAAGCACAATGCGCAATTCGTCTTTCTCAACTCCCCCCTCTATCAAAGTTCAACATCGGGCAGCTAA |
Protein Sequence
|
MPLPKRFRLNAKNYFLTYPKCSLSKEEALSQLLALTIPVNKLFVRVARELHEDGQPHLHVLIQFEGKYQCTNERLFDLVSPTRSAHFHPNIQAAKSSSDVKAYVEKDGDFVDHGVFQIDGRSARGGQQSANDTYAKVLNAGSVMEALNILKEEQPKDYVLQHHNIRSNLERIFAKAPEPWVPPFPLSSFTNVPVEMQSWAHDYFGRDAAARPERPISIIIEGDSRTGKTMWARALGSHNYLSGHLDFNSKVYSNDVQYNVIDDVAPHYLKLKHWKELIGAQRDWQSNCKYGKPVQIKGGIPCIVLCNPGEGASYKSFLDKEENSALNNWTKHNAQFVFLNSPLYQSSTSGS |
NCBI Accession
|
YP_009506525.1
|
Location
|
2024-2317 |
Protein Name
|
C4 |
Coding Region
|
ATGGGCAACCTCATCTGCACGTCCTCATACAGTTCGAAGGAAAATACCAGTGCACGAACGAACGATTGTTCGACCTTGTATCCCCAACAAGGTCAGCACATTTCCATCCGAACATTCAGGCAGCTAAGAGCTCGTCAGATGTCAAGGCATACGTGGAGAAAGACGGAGACTTCGTTGATCATGGAGTTTTCCAGATCGATGGAAGATCAGCTAGAGGAGGTCAGCAATCTGCCAACGACACGTATGCCAAGGTTCTTAACGCAGGATCAGTCATGGAGGCCCTCAATATATTAA |
Protein Sequence
|
MGNLICTSSYSSKENTSARTNDCSTLYPQQGQHISIRTFRQLRARQMSRHTWRKTETSLIMEFSRSMEDQLEEVSNLPTTRMPRFLTQDQSWRPSIY |