Tomato interveinal chlorosis virus


Basic Information

Genus Begomovirus
NCBI Assembly GCF_002823985.1
Isolate Brazil: Pernambuco
Release date 2018/8/25
Submitter Albuquerque,L.C., Varsani,A., Fernandes,F.R., Pinheiro,B., Martin,D.P., de Tarso Oliveira Ferreira,P., Lemos,T.O., Inoue-Nagata,A.K., Martins,D.P., Ferreira,P.T.O.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_038469
ACCGGATGGCCGCGAAAAATTTTGGACTTGGGCCGCTTTAGTTGGGCCCGCTCTCTTTATTGAATGAAAGTAATGTGTGGCCCAACCATATTACGTCTGACGAGTTAAGATATTTGTAACGACTTAGCGCCCAAGTTTAGCAACGGCTATATATTGAACGTGCAATTGTCAGTAACTTTAATTCAAAATGCCTAAGCGCGATGCCCCATGGCGCCACATGGCAGGTACGTCTAAGATTAGCCGGGTCGCTAATTATTCTCCTCGTGCAGGAGTTGGGCCACGATCCAACAAGGCCTCTGAATGGGTTAACAGGCCTATGTACAGGAAGCCCAGGATATATCGGATGTACAGGACCCCCGATGTTCCAAGAGGCTGTGAAGGCCCATGTAAAGTCCAGTCGTATGAGCAGCGTCACGATATATCCCATGTTGGTAAGGTGATGTGCGTCTCCGACGTGACAAGAGGTAATGGTATTACCCACCGTGTAGGGAAGCGTTTTTGTGTTAAGTCCGTTTATATTTTAGGTAAGGTATGGATGGACGAGAATATCAAGTTGAAGAACCACACCAACAGTGTTATGTTCTGGCTGGTCAGAGACCGTAGACCCTATGGGACTCCTATGGACTTCGGCCAAGTTTTTAACATGTTTGACAATGAGCCCAGTACTGCCACGGTCAAGAACGATCTTCGTGATCGTTACCAAGTTATGCATAAATTCTATGCTAAGGTGACAGGTGGACAATACGCAAGCAATGAACAAGCGCTGGTCAAGCGTTTCTGGAGGGTCAACAATCACGTGGTGTACAATCATCAAGAAGCCGGGAAATACGAGAATCATACGGAGAACGCACTATTATTGTATATGGCATGTACTCATGCCTCGAACCCTGTGTATGCGACTTTAAAAATTCGGATCTATTTCTATGATTCGATAATAAATTAATAAATGTTGAATTTTATTGAATGATTCTCTAGTACATCATGAACATATGATTTGTCTGTTGCGAAACGAACAGCTCTAATTACATTATTAACTGAAATAACGCCTAATTGATCTAGATACAACTGAACAAGAAATTTAAATCTACTTAAATATCTCATCCCAGAAGCTCTCAGGGATGTCGTCCAAACTTGGAAGTTGAGATAAGCCTTGTGGAGACCCAACACTCTCCGCAGGTTGTGGTTGAACCGTATCTGGACGTGGTAGACTCTCGTCCTCGTGTAGAGTAGGTCCTCCACATTGTACATCTTGAAATATAGGGGATTTGATATCTCCCAGGTATACACGCCATTCTCTGCCTGATGTGCAGTGATGAGTTCCCCTGTGCGTGAATCCATGCCCTGCGCAGTGGATGTGAACGTATATGGAGCACCCGCACTGTAGATCAATTCGTCTTCGTCGTGTTGCCCTCTTTCTTTTAGCTGCCCGATGTTGAACTTTGATAGAGGGGGGAGTTGAGAAAGACGAATTGCGCATTGTGCTTTGTCCAATTATTTAATGCTGAGTTTTCCTCTTTGTCGAGGAAAGATTTATAACTGGCCCCCTCGCCAGGATTGCAAAGCACGATGCATGGGATACCTCCTTTAATTTGAACTGGCTTTCCGTATTTGCAGTTTGATTGCCAGTCCCTTTGGGCCCCGATAAGTTCTTTCCAGTGCTTTAACTTTAGATAGTGCGGTGCGACATCATCAATGACGTTATACTGCACATCGTTTGAATACACCTTTGAATTGAAATCGAGGTGACCGCTCAAGTAATTGTGGGACCCTAATGCACGTGCCCACATGGTCTTCCCTGTCCTTGAATCACCCTCGATTATTATACTGATAGGCCTCTCCGGCCGCGCAGCGGCATCCCTTCCGAAATAGTCATGTGCCCAAGATTGCATCTCGACAGGCACGTTAGTGAACGACGAGAGGGGAAACGGAGGAACCCACGGTTCTGGAGCCTTTGCAAATATACGCTCTAAATTCGAACGAATATTATGATGCTGAAGAACATAATCTTTTGGCTGTTCCTCCTTTAATATATTGAGGGCCTCCATGACTGATCCTGCGTTAAGAACCTTGGCATACGTGTCGTTGGCAGATTGCTGACCTCCTCTAGCTGATCTTCCATCGATCTGGAAAACTCCATGATCAACGAAGTCTCCGTCTTTCTCCACGTATGCCTTGACATCTGACGAGCTCTTAGCTGCCTGAATGTTCGGATGGAAATGTGCTGACCTTGTTGGGGATACAAGGTCGAACAATCGTTCGTTCGTGCACTGGTATTTTCCTTCGAACTGTATGAGGACGTGCAGATGAGGTTGCCCATCTTCGTGTAATTCTCTCGCAACACGAACGAATAGTTTATTGACTGGTATTGTTAAGGCTAAGAGTTGGGAAAGTGCTTCTTCTTTCGAAAGAGAACACTTAGGATAAGTGAGGAAATAGTTTTTGGCATTTAAACGAAATCGTTTCGGGAGTGGCATATTTGTAAATAAGAGCTTGTACACCGATTGGGAGCTCTCACAAAGTCCGAATGAATCGGTGTATTGGTGTACAATATATACTAGAACCCTCAATAGAACTTTCAATCTCGATCGAACACGTGGCGGCCATCCGTTATAATATT

Gene Information

NCBI Accession YP_009506521.1
Location 188-943
Protein Name V1
Coding Region ATGCCTAAGCGCGATGCCCCATGGCGCCACATGGCAGGTACGTCTAAGATTAGCCGGGTCGCTAATTATTCTCCTCGTGCAGGAGTTGGGCCACGATCCAACAAGGCCTCTGAATGGGTTAACAGGCCTATGTACAGGAAGCCCAGGATATATCGGATGTACAGGACCCCCGATGTTCCAAGAGGCTGTGAAGGCCCATGTAAAGTCCAGTCGTATGAGCAGCGTCACGATATATCCCATGTTGGTAAGGTGATGTGCGTCTCCGACGTGACAAGAGGTAATGGTATTACCCACCGTGTAGGGAAGCGTTTTTGTGTTAAGTCCGTTTATATTTTAGGTAAGGTATGGATGGACGAGAATATCAAGTTGAAGAACCACACCAACAGTGTTATGTTCTGGCTGGTCAGAGACCGTAGACCCTATGGGACTCCTATGGACTTCGGCCAAGTTTTTAACATGTTTGACAATGAGCCCAGTACTGCCACGGTCAAGAACGATCTTCGTGATCGTTACCAAGTTATGCATAAATTCTATGCTAAGGTGACAGGTGGACAATACGCAAGCAATGAACAAGCGCTGGTCAAGCGTTTCTGGAGGGTCAACAATCACGTGGTGTACAATCATCAAGAAGCCGGGAAATACGAGAATCATACGGAGAACGCACTATTATTGTATATGGCATGTACTCATGCCTCGAACCCTGTGTATGCGACTTTAAAAATTCGGATCTATTTCTATGATTCGATAATAAATTAA
Protein Sequence MPKRDAPWRHMAGTSKISRVANYSPRAGVGPRSNKASEWVNRPMYRKPRIYRMYRTPDVPRGCEGPCKVQSYEQRHDISHVGKVMCVSDVTRGNGITHRVGKRFCVKSVYILGKVWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATVKNDLRDRYQVMHKFYAKVTGGQYASNEQALVKRFWRVNNHVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSIIN

NCBI Accession YP_009506522.1
Location 940-1338
Protein Name C3
Coding Region ATGGATTCACGCACAGGGGAACTCATCACTGCACATCAGGCAGAGAATGGCGTGTATACCTGGGAGATATCAAATCCCCTATATTTCAAGATGTACAATGTGGAGGACCTACTCTACACGAGGACGAGAGTCTACCACGTCCAGATACGGTTCAACCACAACCTGCGGAGAGTGTTGGGTCTCCACAAGGCTTATCTCAACTTCCAAGTTTGGACGACATCCCTGAGAGCTTCTGGGATGAGATATTTAAGTAGATTTAAATTTCTTGTTCAGTTGTATCTAGATCAATTAGGCGTTATTTCAGTTAATAATGTAATTAGAGCTGTTCGTTTCGCAACAGACAAATCATATGTTCATGATGTACTAGAGAATCATTCAATAAAATTCAACATTTATTAA
Protein Sequence MDSRTGELITAHQAENGVYTWEISNPLYFKMYNVEDLLYTRTRVYHVQIRFNHNLRRVLGLHKAYLNFQVWTTSLRASGMRYLSRFKFLVQLYLDQLGVISVNNVIRAVRFATDKSYVHDVLENHSIKFNIY

NCBI Accession YP_009506523.1
Location 1085-1477
Protein Name C2
Coding Region ATGCGCAATTCGTCTTTCTCAACTCCCCCCTCTATCAAAGTTCAACATCGGGCAGCTAAAAGAAAGAGGGCAACACGACGAAGACGAATTGATCTACAGTGCGGGTGCTCCATATACGTTCACATCCACTGCGCAGGGCATGGATTCACGCACAGGGGAACTCATCACTGCACATCAGGCAGAGAATGGCGTGTATACCTGGGAGATATCAAATCCCCTATATTTCAAGATGTACAATGTGGAGGACCTACTCTACACGAGGACGAGAGTCTACCACGTCCAGATACGGTTCAACCACAACCTGCGGAGAGTGTTGGGTCTCCACAAGGCTTATCTCAACTTCCAAGTTTGGACGACATCCCTGAGAGCTTCTGGGATGAGATATTTAAGTAG
Protein Sequence MRNSSFSTPPSIKVQHRAAKRKRATRRRRIDLQCGCSIYVHIHCAGHGFTHRGTHHCTSGREWRVYLGDIKSPIFQDVQCGGPTLHEDESLPRPDTVQPQPAESVGSPQGLSQLPSLDDIPESFWDEIFK

NCBI Accession YP_009506524.1
Location 1419-2474
Protein Name C1
Coding Region ATGCCACTCCCGAAACGATTTCGTTTAAATGCCAAAAACTATTTCCTCACTTATCCTAAGTGTTCTCTTTCGAAAGAAGAAGCACTTTCCCAACTCTTAGCCTTAACAATACCAGTCAATAAACTATTCGTTCGTGTTGCGAGAGAATTACACGAAGATGGGCAACCTCATCTGCACGTCCTCATACAGTTCGAAGGAAAATACCAGTGCACGAACGAACGATTGTTCGACCTTGTATCCCCAACAAGGTCAGCACATTTCCATCCGAACATTCAGGCAGCTAAGAGCTCGTCAGATGTCAAGGCATACGTGGAGAAAGACGGAGACTTCGTTGATCATGGAGTTTTCCAGATCGATGGAAGATCAGCTAGAGGAGGTCAGCAATCTGCCAACGACACGTATGCCAAGGTTCTTAACGCAGGATCAGTCATGGAGGCCCTCAATATATTAAAGGAGGAACAGCCAAAAGATTATGTTCTTCAGCATCATAATATTCGTTCGAATTTAGAGCGTATATTTGCAAAGGCTCCAGAACCGTGGGTTCCTCCGTTTCCCCTCTCGTCGTTCACTAACGTGCCTGTCGAGATGCAATCTTGGGCACATGACTATTTCGGAAGGGATGCCGCTGCGCGGCCGGAGAGGCCTATCAGTATAATAATCGAGGGTGATTCAAGGACAGGGAAGACCATGTGGGCACGTGCATTAGGGTCCCACAATTACTTGAGCGGTCACCTCGATTTCAATTCAAAGGTGTATTCAAACGATGTGCAGTATAACGTCATTGATGATGTCGCACCGCACTATCTAAAGTTAAAGCACTGGAAAGAACTTATCGGGGCCCAAAGGGACTGGCAATCAAACTGCAAATACGGAAAGCCAGTTCAAATTAAAGGAGGTATCCCATGCATCGTGCTTTGCAATCCTGGCGAGGGGGCCAGTTATAAATCTTTCCTCGACAAAGAGGAAAACTCAGCATTAAATAATTGGACAAAGCACAATGCGCAATTCGTCTTTCTCAACTCCCCCCTCTATCAAAGTTCAACATCGGGCAGCTAA
Protein Sequence MPLPKRFRLNAKNYFLTYPKCSLSKEEALSQLLALTIPVNKLFVRVARELHEDGQPHLHVLIQFEGKYQCTNERLFDLVSPTRSAHFHPNIQAAKSSSDVKAYVEKDGDFVDHGVFQIDGRSARGGQQSANDTYAKVLNAGSVMEALNILKEEQPKDYVLQHHNIRSNLERIFAKAPEPWVPPFPLSSFTNVPVEMQSWAHDYFGRDAAARPERPISIIIEGDSRTGKTMWARALGSHNYLSGHLDFNSKVYSNDVQYNVIDDVAPHYLKLKHWKELIGAQRDWQSNCKYGKPVQIKGGIPCIVLCNPGEGASYKSFLDKEENSALNNWTKHNAQFVFLNSPLYQSSTSGS

NCBI Accession YP_009506525.1
Location 2024-2317
Protein Name C4
Coding Region ATGGGCAACCTCATCTGCACGTCCTCATACAGTTCGAAGGAAAATACCAGTGCACGAACGAACGATTGTTCGACCTTGTATCCCCAACAAGGTCAGCACATTTCCATCCGAACATTCAGGCAGCTAAGAGCTCGTCAGATGTCAAGGCATACGTGGAGAAAGACGGAGACTTCGTTGATCATGGAGTTTTCCAGATCGATGGAAGATCAGCTAGAGGAGGTCAGCAATCTGCCAACGACACGTATGCCAAGGTTCTTAACGCAGGATCAGTCATGGAGGCCCTCAATATATTAA
Protein Sequence MGNLICTSSYSSKENTSARTNDCSTLYPQQGQHISIRTFRQLRARQMSRHTWRKTETSLIMEFSRSMEDQLEEVSNLPTTRMPRFLTQDQSWRPSIY