Tomato golden mottle virus
Basic Information
Genus |
Begomovirus
|
NCBI Assembly |
GCF_000839225.1 |
Isolate |
Mexico |
Release date |
2015/2/12 |
Submitter |
Mauricio-Castillo,J.A., Arguello-Astorga,G.R., Gregorio-Jorge,J., Ambriz-Granados,S., Alpuche-Solis,A.G., Monreal-Vargas,C.T. |
Host |
|
Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGCGATTTTTACCCGACCCGGGCCCATTAATGAAATATTCTCGGGTTATGCAATGATGATAAATATGGCTGTCCAATCACATGACGTCTGCTGGGTCTAATTAGTGGTCCTTGGTAGACAAGAATGGACCCGGATATCTATAAATATTAAAGTGAATCCCACTATTGTATATCTTTAATTTGAAATGCCAAAGCGCGATGCTCCGTGGCGATTGATGGGGGGGACCTCAAAAGTGAGCCGGTCCTCCAACCAGTCTCCCAGGACTGGTACTGGGCCTAAATTTGACAAGGCCCATGCATGGGTTAACAGGCCTATGTACAGGAAGCCCAGGATATATCGGGCTTGGAGAACACCCGACGTTCCTAGAGGCTGTGAAGGCCCATGTAAGGTCCAGTCATTTGAACAACGTCATGATATCTCCCATGTTGGTAAGGTGATGTGCATATCGGACGTCACCCGTGGTAACGGTATCACTCACCGCGTTGGTAAGCGTTTTTGTGTTAAGTCCGTGTATATATTAGGCAAGATCTGGATGGATGACAACATCAAATTGAAGAACCACACGAACAGTGTCATGTTCTGGTTGGTCAGGGATAGGAGACCATATGGTACTCCTATGGATTTTGGCCAAGTGTTCAATATGTACGACAATGAGCCTAGTACTGCTACTGTGAAGAACGATCTTCGTGATTGTTATCAGGTAGTCCACAGATTTTATGCTAAGGTCACTGGTGGTCAGTATGCCAGCAATGAGCAGGCTCTTGTCAGACGATTCTGGAAGGTGAACAACCATGTGGTGTACAACCATCAGGAAGCCGGGAAGTATGAGAACCACACAGAGAATGCTCTGTTATTGTATATGGCGTGTACTCATGCTTTTAATCCTGTATATGCAACTTTGAAAATTCGGATCTATTTTTATGATTCGATAAGTAATTAATAAATTTTGAATTTTATTGAATGTCTTTCTAATACATGATTTACATATGGTTTATCTGTTGCGAAGCGAACAGCACGAATGACATTATTAAGTGAAATAACACCTAATCTATCTAAGTACAATAAAACTAAACTCCTAAACCGATTCAAATAAGTCGTCCCAGAAGCCGTCAGGGATGTCGTCCAGACTTGGAAATTTAGGTATGCCTTGTGTAGATCCAAAGCTTTCCTCACGTTGTGGTTGAACCTGATCTGCACGTGGTATATCCTGATGTTCGTGTATAGGAGATCCTCTACGTTGTATATCTTGAAATAGAGGGGATTTGGAACATCCCAAATAAAAACGCCATTCCCTGCTTGACGAGCAGTGATGGGTTCCCCTGTGCGTGAATCCATTGTTGGCGCAGTTGATGTGCACGTATATTGTACGGCCGCAGTCCAAGTCTATACGTTTTCGACGTATTCCCTTTCGTTTTGCAATCCTGTGTTTAGGTTTGATAGAGGGGGGCGTCGAGGAAGACGAATTCTGCATTGTGATGTGTCCACGCCTTGAGATGTGAGTTTTCCTGTTTGTCGAGGTAGTATTTATAGCTAGCCCCCTCACCAGGATTGCATAGCACGATTGATGGAATGCCACCTTTAATTTGAATGGGTTTCCCGTATTTACAGTTGGTCTGCCAGTCTGTCTGGGCCCCAATGAGCTCTTTCCAGTGTTTCATCTTTAGATAGTGCGGTGGTACGTCATCAATGACGTTGTACATAACATCGTTTGAGTAAACTCTAGAATTGAAATCTAGATGACCACTCAAATAATTATGAATTCCTAATGAACGAGCCCACATCGTCTTTCCCGTTCTTGAATCACCTTCGATGATGATACTGATAGGTCTTAATGTCCGCGCAGCGCAACCATTTCCAAAATAATCATCAGCCCATGACTGTAACTCCTCAGGCACGTTGTTAAATGAGGAGAGTGAAAATGGAGGAACCCATGGTTCTGGAGCTTTTGTAAATATCTTCTCAAGGTTACCCTTGAGATTGTGAAAATCTTTAACAAAATCCCTAGGTTGTTCTTCCTTTAAAATTTGGAGTGCCTCTTGCACTCCATTTGCGTTAAGCGCCTTGGCATACGAGTCGTTTGCAGTCTGCTGACCTCCTCTAGCAGATCTGCCATCGATTTGAAATTCTCCCCATTCGAGGGTATCTCCATCTTTGTCGATATATGATTTGACATCGGAACTAGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGATCTGGTTGGGGATACCAGATCGAACTGTCGTTCATTCGTGATCTGGACTTTTCCTTCAAGTTGGACAAGGGCATGGAGATGAGGTTTCCCATTCTCGTGAAGCTCTCTGCAAATCTTGATATATCGTTTATTCGAAGTTAGTTGTATTGATTGTAATTGCTCTAATGCTTCATCTTTAGTAAGAGAGCATAATGGGTATGTTAGGAATATATTTTTTGCTTGAAGTCTGAAACGTCTTGGTGGTGGCATATTTGTAATTAAAGGGTGTACTCCAATTGAGCTCCTCTCAACTTGGCGAAACAAATTGGAGTATTGGAGTACAATTTATACTAAAACCTAAGATAGCGCTTGGAGACACGTGGCGGCCATCCGTTTATAATATT
Gene Information
NCBI Accession
|
YP_619880.1
|
Location
|
197-952 |
Gene Name
|
AV1 |
Protein Name
|
coat protein |
Coding Region
|
ATGCCAAAGCGCGATGCTCCGTGGCGATTGATGGGGGGGACCTCAAAAGTGAGCCGGTCCTCCAACCAGTCTCCCAGGACTGGTACTGGGCCTAAATTTGACAAGGCCCATGCATGGGTTAACAGGCCTATGTACAGGAAGCCCAGGATATATCGGGCTTGGAGAACACCCGACGTTCCTAGAGGCTGTGAAGGCCCATGTAAGGTCCAGTCATTTGAACAACGTCATGATATCTCCCATGTTGGTAAGGTGATGTGCATATCGGACGTCACCCGTGGTAACGGTATCACTCACCGCGTTGGTAAGCGTTTTTGTGTTAAGTCCGTGTATATATTAGGCAAGATCTGGATGGATGACAACATCAAATTGAAGAACCACACGAACAGTGTCATGTTCTGGTTGGTCAGGGATAGGAGACCATATGGTACTCCTATGGATTTTGGCCAAGTGTTCAATATGTACGACAATGAGCCTAGTACTGCTACTGTGAAGAACGATCTTCGTGATTGTTATCAGGTAGTCCACAGATTTTATGCTAAGGTCACTGGTGGTCAGTATGCCAGCAATGAGCAGGCTCTTGTCAGACGATTCTGGAAGGTGAACAACCATGTGGTGTACAACCATCAGGAAGCCGGGAAGTATGAGAACCACACAGAGAATGCTCTGTTATTGTATATGGCGTGTACTCATGCTTTTAATCCTGTATATGCAACTTTGAAAATTCGGATCTATTTTTATGATTCGATAAGTAATTAA |
Protein Sequence
|
MPKRDAPWRLMGGTSKVSRSSNQSPRTGTGPKFDKAHAWVNRPMYRKPRIYRAWRTPDVPRGCEGPCKVQSFEQRHDISHVGKVMCISDVTRGNGITHRVGKRFCVKSVYILGKIWMDDNIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMYDNEPSTATVKNDLRDCYQVVHRFYAKVTGGQYASNEQALVRRFWKVNNHVVYNHQEAGKYENHTENALLLYMACTHAFNPVYATLKIRIYFYDSISN |
NCBI Accession
|
YP_619881.1
|
Location
|
949-1347 |
Gene Name
|
AC3 |
Protein Name
|
replication enhancer protein |
Coding Region
|
ATGGATTCACGCACAGGGGAACCCATCACTGCTCGTCAAGCAGGGAATGGCGTTTTTATTTGGGATGTTCCAAATCCCCTCTATTTCAAGATATACAACGTAGAGGATCTCCTATACACGAACATCAGGATATACCACGTGCAGATCAGGTTCAACCACAACGTGAGGAAAGCTTTGGATCTACACAAGGCATACCTAAATTTCCAAGTCTGGACGACATCCCTGACGGCTTCTGGGACGACTTATTTGAATCGGTTTAGGAGTTTAGTTTTATTGTACTTAGATAGATTAGGTGTTATTTCACTTAATAATGTCATTCGTGCTGTTCGCTTCGCAACAGATAAACCATATGTAAATCATGTATTAGAAAGACATTCAATAAAATTCAAAATTTATTAA |
Protein Sequence
|
MDSRTGEPITARQAGNGVFIWDVPNPLYFKIYNVEDLLYTNIRIYHVQIRFNHNVRKALDLHKAYLNFQVWTTSLTASGTTYLNRFRSLVLLYLDRLGVISLNNVIRAVRFATDKPYVNHVLERHSIKFKIY |
NCBI Accession
|
YP_619882.1
|
Location
|
1088-1483 |
Gene Name
|
AC2 |
Protein Name
|
transactivator protein TrAP |
Coding Region
|
ATGCAGAATTCGTCTTCCTCGACGCCCCCCTCTATCAAACCTAAACACAGGATTGCAAAACGAAAGGGAATACGTCGAAAACGTATAGACTTGGACTGCGGCCGTACAATATACGTGCACATCAACTGCGCCAACAATGGATTCACGCACAGGGGAACCCATCACTGCTCGTCAAGCAGGGAATGGCGTTTTTATTTGGGATGTTCCAAATCCCCTCTATTTCAAGATATACAACGTAGAGGATCTCCTATACACGAACATCAGGATATACCACGTGCAGATCAGGTTCAACCACAACGTGAGGAAAGCTTTGGATCTACACAAGGCATACCTAAATTTCCAAGTCTGGACGACATCCCTGACGGCTTCTGGGACGACTTATTTGAATCGGTTTAG |
Protein Sequence
|
MQNSSSSTPPSIKPKHRIAKRKGIRRKRIDLDCGRTIYVHINCANNGFTHRGTHHCSSSREWRFYLGCSKSPLFQDIQRRGSPIHEHQDIPRADQVQPQREESFGSTQGIPKFPSLDDIPDGFWDDLFESV |
NCBI Accession
|
YP_619883.1
|
Location
|
1440-2480 |
Gene Name
|
AC1 |
Protein Name
|
replication protein |
Coding Region
|
ATGCCACCACCAAGACGTTTCAGACTTCAAGCAAAAAATATATTCCTAACATACCCATTATGCTCTCTTACTAAAGATGAAGCATTAGAGCAATTACAATCAATACAACTAACTTCGAATAAACGATATATCAAGATTTGCAGAGAGCTTCACGAGAATGGGAAACCTCATCTCCATGCCCTTGTCCAACTTGAAGGAAAAGTCCAGATCACGAATGAACGACAGTTCGATCTGGTATCCCCAACCAGATCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCTAGTTCCGATGTCAAATCATATATCGACAAAGATGGAGATACCCTCGAATGGGGAGAATTTCAAATCGATGGCAGATCTGCTAGAGGAGGTCAGCAGACTGCAAACGACTCGTATGCCAAGGCGCTTAACGCAAATGGAGTGCAAGAGGCACTCCAAATTTTAAAGGAAGAACAACCTAGGGATTTTGTTAAAGATTTTCACAATCTCAAGGGTAACCTTGAGAAGATATTTACAAAAGCTCCAGAACCATGGGTTCCTCCATTTTCACTCTCCTCATTTAACAACGTGCCTGAGGAGTTACAGTCATGGGCTGATGATTATTTTGGAAATGGTTGCGCTGCGCGGACATTAAGACCTATCAGTATCATCATCGAAGGTGATTCAAGAACGGGAAAGACGATGTGGGCTCGTTCATTAGGAATTCATAATTATTTGAGTGGTCATCTAGATTTCAATTCTAGAGTTTACTCAAACGATGTTATGTACAACGTCATTGATGACGTACCACCGCACTATCTAAAGATGAAACACTGGAAAGAGCTCATTGGGGCCCAGACAGACTGGCAGACCAACTGTAAATACGGGAAACCCATTCAAATTAAAGGTGGCATTCCATCAATCGTGCTATGCAATCCTGGTGAGGGGGCTAGCTATAAATACTACCTCGACAAACAGGAAAACTCACATCTCAAGGCGTGGACACATCACAATGCAGAATTCGTCTTCCTCGACGCCCCCCTCTATCAAACCTAA |
Protein Sequence
|
MPPPRRFRLQAKNIFLTYPLCSLTKDEALEQLQSIQLTSNKRYIKICRELHENGKPHLHALVQLEGKVQITNERQFDLVSPTRSAHFHPNIQGAKSSSDVKSYIDKDGDTLEWGEFQIDGRSARGGQQTANDSYAKALNANGVQEALQILKEEQPRDFVKDFHNLKGNLEKIFTKAPEPWVPPFSLSSFNNVPEELQSWADDYFGNGCAARTLRPISIIIEGDSRTGKTMWARSLGIHNYLSGHLDFNSRVYSNDVMYNVIDDVPPHYLKMKHWKELIGAQTDWQTNCKYGKPIQIKGGIPSIVLCNPGEGASYKYYLDKQENSHLKAWTHHNAEFVFLDAPLYQT |
NCBI Accession
|
YP_619884.1
|
Location
|
2030-2323 |
Gene Name
|
AC4 |
Protein Name
|
AC4 |
Coding Region
|
ATGGGAAACCTCATCTCCATGCCCTTGTCCAACTTGAAGGAAAAGTCCAGATCACGAATGAACGACAGTTCGATCTGGTATCCCCAACCAGATCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCTAGTTCCGATGTCAAATCATATATCGACAAAGATGGAGATACCCTCGAATGGGGAGAATTTCAAATCGATGGCAGATCTGCTAGAGGAGGTCAGCAGACTGCAAACGACTCGTATGCCAAGGCGCTTAACGCAAATGGAGTGCAAGAGGCACTCCAAATTTTAA |
Protein Sequence
|
MGNLISMPLSNLKEKSRSRMNDSSIWYPQPDQHISIRTFRELNLVPMSNHISTKMEIPSNGENFKSMADLLEEVSRLQTTRMPRRLTQMECKRHSKF |