Tomato golden mottle virus


Basic Information

Genus Begomovirus
NCBI Assembly GCF_000839225.1
Isolate Mexico
Release date 2015/2/12
Submitter Mauricio-Castillo,J.A., Arguello-Astorga,G.R., Gregorio-Jorge,J., Ambriz-Granados,S., Alpuche-Solis,A.G., Monreal-Vargas,C.T.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_008058
ACCGGATGGCCGCGCGATTTTTACCCGACCCGGGCCCATTAATGAAATATTCTCGGGTTATGCAATGATGATAAATATGGCTGTCCAATCACATGACGTCTGCTGGGTCTAATTAGTGGTCCTTGGTAGACAAGAATGGACCCGGATATCTATAAATATTAAAGTGAATCCCACTATTGTATATCTTTAATTTGAAATGCCAAAGCGCGATGCTCCGTGGCGATTGATGGGGGGGACCTCAAAAGTGAGCCGGTCCTCCAACCAGTCTCCCAGGACTGGTACTGGGCCTAAATTTGACAAGGCCCATGCATGGGTTAACAGGCCTATGTACAGGAAGCCCAGGATATATCGGGCTTGGAGAACACCCGACGTTCCTAGAGGCTGTGAAGGCCCATGTAAGGTCCAGTCATTTGAACAACGTCATGATATCTCCCATGTTGGTAAGGTGATGTGCATATCGGACGTCACCCGTGGTAACGGTATCACTCACCGCGTTGGTAAGCGTTTTTGTGTTAAGTCCGTGTATATATTAGGCAAGATCTGGATGGATGACAACATCAAATTGAAGAACCACACGAACAGTGTCATGTTCTGGTTGGTCAGGGATAGGAGACCATATGGTACTCCTATGGATTTTGGCCAAGTGTTCAATATGTACGACAATGAGCCTAGTACTGCTACTGTGAAGAACGATCTTCGTGATTGTTATCAGGTAGTCCACAGATTTTATGCTAAGGTCACTGGTGGTCAGTATGCCAGCAATGAGCAGGCTCTTGTCAGACGATTCTGGAAGGTGAACAACCATGTGGTGTACAACCATCAGGAAGCCGGGAAGTATGAGAACCACACAGAGAATGCTCTGTTATTGTATATGGCGTGTACTCATGCTTTTAATCCTGTATATGCAACTTTGAAAATTCGGATCTATTTTTATGATTCGATAAGTAATTAATAAATTTTGAATTTTATTGAATGTCTTTCTAATACATGATTTACATATGGTTTATCTGTTGCGAAGCGAACAGCACGAATGACATTATTAAGTGAAATAACACCTAATCTATCTAAGTACAATAAAACTAAACTCCTAAACCGATTCAAATAAGTCGTCCCAGAAGCCGTCAGGGATGTCGTCCAGACTTGGAAATTTAGGTATGCCTTGTGTAGATCCAAAGCTTTCCTCACGTTGTGGTTGAACCTGATCTGCACGTGGTATATCCTGATGTTCGTGTATAGGAGATCCTCTACGTTGTATATCTTGAAATAGAGGGGATTTGGAACATCCCAAATAAAAACGCCATTCCCTGCTTGACGAGCAGTGATGGGTTCCCCTGTGCGTGAATCCATTGTTGGCGCAGTTGATGTGCACGTATATTGTACGGCCGCAGTCCAAGTCTATACGTTTTCGACGTATTCCCTTTCGTTTTGCAATCCTGTGTTTAGGTTTGATAGAGGGGGGCGTCGAGGAAGACGAATTCTGCATTGTGATGTGTCCACGCCTTGAGATGTGAGTTTTCCTGTTTGTCGAGGTAGTATTTATAGCTAGCCCCCTCACCAGGATTGCATAGCACGATTGATGGAATGCCACCTTTAATTTGAATGGGTTTCCCGTATTTACAGTTGGTCTGCCAGTCTGTCTGGGCCCCAATGAGCTCTTTCCAGTGTTTCATCTTTAGATAGTGCGGTGGTACGTCATCAATGACGTTGTACATAACATCGTTTGAGTAAACTCTAGAATTGAAATCTAGATGACCACTCAAATAATTATGAATTCCTAATGAACGAGCCCACATCGTCTTTCCCGTTCTTGAATCACCTTCGATGATGATACTGATAGGTCTTAATGTCCGCGCAGCGCAACCATTTCCAAAATAATCATCAGCCCATGACTGTAACTCCTCAGGCACGTTGTTAAATGAGGAGAGTGAAAATGGAGGAACCCATGGTTCTGGAGCTTTTGTAAATATCTTCTCAAGGTTACCCTTGAGATTGTGAAAATCTTTAACAAAATCCCTAGGTTGTTCTTCCTTTAAAATTTGGAGTGCCTCTTGCACTCCATTTGCGTTAAGCGCCTTGGCATACGAGTCGTTTGCAGTCTGCTGACCTCCTCTAGCAGATCTGCCATCGATTTGAAATTCTCCCCATTCGAGGGTATCTCCATCTTTGTCGATATATGATTTGACATCGGAACTAGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGATCTGGTTGGGGATACCAGATCGAACTGTCGTTCATTCGTGATCTGGACTTTTCCTTCAAGTTGGACAAGGGCATGGAGATGAGGTTTCCCATTCTCGTGAAGCTCTCTGCAAATCTTGATATATCGTTTATTCGAAGTTAGTTGTATTGATTGTAATTGCTCTAATGCTTCATCTTTAGTAAGAGAGCATAATGGGTATGTTAGGAATATATTTTTTGCTTGAAGTCTGAAACGTCTTGGTGGTGGCATATTTGTAATTAAAGGGTGTACTCCAATTGAGCTCCTCTCAACTTGGCGAAACAAATTGGAGTATTGGAGTACAATTTATACTAAAACCTAAGATAGCGCTTGGAGACACGTGGCGGCCATCCGTTTATAATATT

Gene Information

NCBI Accession YP_619880.1
Location 197-952
Gene Name AV1
Protein Name coat protein
Coding Region ATGCCAAAGCGCGATGCTCCGTGGCGATTGATGGGGGGGACCTCAAAAGTGAGCCGGTCCTCCAACCAGTCTCCCAGGACTGGTACTGGGCCTAAATTTGACAAGGCCCATGCATGGGTTAACAGGCCTATGTACAGGAAGCCCAGGATATATCGGGCTTGGAGAACACCCGACGTTCCTAGAGGCTGTGAAGGCCCATGTAAGGTCCAGTCATTTGAACAACGTCATGATATCTCCCATGTTGGTAAGGTGATGTGCATATCGGACGTCACCCGTGGTAACGGTATCACTCACCGCGTTGGTAAGCGTTTTTGTGTTAAGTCCGTGTATATATTAGGCAAGATCTGGATGGATGACAACATCAAATTGAAGAACCACACGAACAGTGTCATGTTCTGGTTGGTCAGGGATAGGAGACCATATGGTACTCCTATGGATTTTGGCCAAGTGTTCAATATGTACGACAATGAGCCTAGTACTGCTACTGTGAAGAACGATCTTCGTGATTGTTATCAGGTAGTCCACAGATTTTATGCTAAGGTCACTGGTGGTCAGTATGCCAGCAATGAGCAGGCTCTTGTCAGACGATTCTGGAAGGTGAACAACCATGTGGTGTACAACCATCAGGAAGCCGGGAAGTATGAGAACCACACAGAGAATGCTCTGTTATTGTATATGGCGTGTACTCATGCTTTTAATCCTGTATATGCAACTTTGAAAATTCGGATCTATTTTTATGATTCGATAAGTAATTAA
Protein Sequence MPKRDAPWRLMGGTSKVSRSSNQSPRTGTGPKFDKAHAWVNRPMYRKPRIYRAWRTPDVPRGCEGPCKVQSFEQRHDISHVGKVMCISDVTRGNGITHRVGKRFCVKSVYILGKIWMDDNIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMYDNEPSTATVKNDLRDCYQVVHRFYAKVTGGQYASNEQALVRRFWKVNNHVVYNHQEAGKYENHTENALLLYMACTHAFNPVYATLKIRIYFYDSISN

NCBI Accession YP_619881.1
Location 949-1347
Gene Name AC3
Protein Name replication enhancer protein
Coding Region ATGGATTCACGCACAGGGGAACCCATCACTGCTCGTCAAGCAGGGAATGGCGTTTTTATTTGGGATGTTCCAAATCCCCTCTATTTCAAGATATACAACGTAGAGGATCTCCTATACACGAACATCAGGATATACCACGTGCAGATCAGGTTCAACCACAACGTGAGGAAAGCTTTGGATCTACACAAGGCATACCTAAATTTCCAAGTCTGGACGACATCCCTGACGGCTTCTGGGACGACTTATTTGAATCGGTTTAGGAGTTTAGTTTTATTGTACTTAGATAGATTAGGTGTTATTTCACTTAATAATGTCATTCGTGCTGTTCGCTTCGCAACAGATAAACCATATGTAAATCATGTATTAGAAAGACATTCAATAAAATTCAAAATTTATTAA
Protein Sequence MDSRTGEPITARQAGNGVFIWDVPNPLYFKIYNVEDLLYTNIRIYHVQIRFNHNVRKALDLHKAYLNFQVWTTSLTASGTTYLNRFRSLVLLYLDRLGVISLNNVIRAVRFATDKPYVNHVLERHSIKFKIY

NCBI Accession YP_619882.1
Location 1088-1483
Gene Name AC2
Protein Name transactivator protein TrAP
Coding Region ATGCAGAATTCGTCTTCCTCGACGCCCCCCTCTATCAAACCTAAACACAGGATTGCAAAACGAAAGGGAATACGTCGAAAACGTATAGACTTGGACTGCGGCCGTACAATATACGTGCACATCAACTGCGCCAACAATGGATTCACGCACAGGGGAACCCATCACTGCTCGTCAAGCAGGGAATGGCGTTTTTATTTGGGATGTTCCAAATCCCCTCTATTTCAAGATATACAACGTAGAGGATCTCCTATACACGAACATCAGGATATACCACGTGCAGATCAGGTTCAACCACAACGTGAGGAAAGCTTTGGATCTACACAAGGCATACCTAAATTTCCAAGTCTGGACGACATCCCTGACGGCTTCTGGGACGACTTATTTGAATCGGTTTAG
Protein Sequence MQNSSSSTPPSIKPKHRIAKRKGIRRKRIDLDCGRTIYVHINCANNGFTHRGTHHCSSSREWRFYLGCSKSPLFQDIQRRGSPIHEHQDIPRADQVQPQREESFGSTQGIPKFPSLDDIPDGFWDDLFESV

NCBI Accession YP_619883.1
Location 1440-2480
Gene Name AC1
Protein Name replication protein
Coding Region ATGCCACCACCAAGACGTTTCAGACTTCAAGCAAAAAATATATTCCTAACATACCCATTATGCTCTCTTACTAAAGATGAAGCATTAGAGCAATTACAATCAATACAACTAACTTCGAATAAACGATATATCAAGATTTGCAGAGAGCTTCACGAGAATGGGAAACCTCATCTCCATGCCCTTGTCCAACTTGAAGGAAAAGTCCAGATCACGAATGAACGACAGTTCGATCTGGTATCCCCAACCAGATCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCTAGTTCCGATGTCAAATCATATATCGACAAAGATGGAGATACCCTCGAATGGGGAGAATTTCAAATCGATGGCAGATCTGCTAGAGGAGGTCAGCAGACTGCAAACGACTCGTATGCCAAGGCGCTTAACGCAAATGGAGTGCAAGAGGCACTCCAAATTTTAAAGGAAGAACAACCTAGGGATTTTGTTAAAGATTTTCACAATCTCAAGGGTAACCTTGAGAAGATATTTACAAAAGCTCCAGAACCATGGGTTCCTCCATTTTCACTCTCCTCATTTAACAACGTGCCTGAGGAGTTACAGTCATGGGCTGATGATTATTTTGGAAATGGTTGCGCTGCGCGGACATTAAGACCTATCAGTATCATCATCGAAGGTGATTCAAGAACGGGAAAGACGATGTGGGCTCGTTCATTAGGAATTCATAATTATTTGAGTGGTCATCTAGATTTCAATTCTAGAGTTTACTCAAACGATGTTATGTACAACGTCATTGATGACGTACCACCGCACTATCTAAAGATGAAACACTGGAAAGAGCTCATTGGGGCCCAGACAGACTGGCAGACCAACTGTAAATACGGGAAACCCATTCAAATTAAAGGTGGCATTCCATCAATCGTGCTATGCAATCCTGGTGAGGGGGCTAGCTATAAATACTACCTCGACAAACAGGAAAACTCACATCTCAAGGCGTGGACACATCACAATGCAGAATTCGTCTTCCTCGACGCCCCCCTCTATCAAACCTAA
Protein Sequence MPPPRRFRLQAKNIFLTYPLCSLTKDEALEQLQSIQLTSNKRYIKICRELHENGKPHLHALVQLEGKVQITNERQFDLVSPTRSAHFHPNIQGAKSSSDVKSYIDKDGDTLEWGEFQIDGRSARGGQQTANDSYAKALNANGVQEALQILKEEQPRDFVKDFHNLKGNLEKIFTKAPEPWVPPFSLSSFNNVPEELQSWADDYFGNGCAARTLRPISIIIEGDSRTGKTMWARSLGIHNYLSGHLDFNSRVYSNDVMYNVIDDVPPHYLKMKHWKELIGAQTDWQTNCKYGKPIQIKGGIPSIVLCNPGEGASYKYYLDKQENSHLKAWTHHNAEFVFLDAPLYQT

NCBI Accession YP_619884.1
Location 2030-2323
Gene Name AC4
Protein Name AC4
Coding Region ATGGGAAACCTCATCTCCATGCCCTTGTCCAACTTGAAGGAAAAGTCCAGATCACGAATGAACGACAGTTCGATCTGGTATCCCCAACCAGATCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCTAGTTCCGATGTCAAATCATATATCGACAAAGATGGAGATACCCTCGAATGGGGAGAATTTCAAATCGATGGCAGATCTGCTAGAGGAGGTCAGCAGACTGCAAACGACTCGTATGCCAAGGCGCTTAACGCAAATGGAGTGCAAGAGGCACTCCAAATTTTAA
Protein Sequence MGNLISMPLSNLKEKSRSRMNDSSIWYPQPDQHISIRTFRELNLVPMSNHISTKMEIPSNGENFKSMADLLEEVSRLQTTRMPRRLTQMECKRHSKF