Tobacco leaf curl Thailand virus
Basic Information
Genus |
Begomovirus
|
NCBI Assembly |
GCF_000871705.1 |
Isolate |
Thailand |
Release date |
2015/2/13 |
Submitter |
Knierim,D., Maiss,E. |
Host |
|
Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
TAATATTACCGGATGGCCGCGATTTTTTTAAAGTGGGCCCCCTGATGTGATATGTCCCCCAATAAAAACGCTCCCTCAAAGCCTATTTAATTCAAATCCATTATAAATACTTGGTCCCTACGTTTTTCAATTAAAGACATGTGGGATCCATTAGTAAACGAGTTTCCCGAAACCGTTCACGGATTTAGGTGTATGTTAGCAGTTAAATATCTGCAGTTAGTAGAGAAGACCTATTCGCCTGACACATTAGGGCACGATTTAATTAGGGATTTAATTTCTGTTATTAGGGCTAGAAATTATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCCTCGAAGGTACGTCGCCGTCTGAACTTCGACAGCCCATATGTGAGCCGTGCTGCTGCCCCCACTGTCCGCGTCACAAAAGCAAGATCATGGACGAACAGGCCCATGAACAGAAAGCCCAAGATGTACAGGATGTACAGAAGTCCAGATGTCCCTAGAGGATGTGAAGGCCCATGTAAGGTTCAATCGTTTGATGCTAAGAACGATATTGGTCACATGGGCAAGGTCTTATGTTTGTCCGACGTTACCCGTGGTATTGGGCTTACCCATCGAGTTGGCAAGCGTTTCTGTGTCAAATCACTTTATTTTGTTGGCAAGATCTGGATGGATGAAAATATTAAGGTTAAGAACCACACTAACACCGTTTTATTCTGGATAGTTAGAGATCGGCGTCCTACTGGAACGCCTAATGATTTTCAGCAGGTCTTTAATGTATATGATAATGAACCCAGCACTGCTACTGTGAAGAACGACCAGCGTGATCGTTACCAGGTTTTAAGGAGGTTCCAGGCAACGGTGACTGGTGGACAATATGCAGCGAAGGAGCAGGCGATTATTAGAAAGTTTTATCGTGTTAATAATTATGTAGTTTACAATCACCAGGAAGCTGGGAAGTACGAGAACCATACTGAAAATGCTTTGTTGTTGTATATGGCATGTACTCATGCCTCTAATCCTGTGTATGCTACTTTGAAAGTCAGAAGTTATTTCTATGACTCAGTGACGAATTAATAAAGATTGAATTTTATTATATTAGACTGTCTTACATATTCTGTCTTTTCCAATACATCCCATAATACATGATCACATGCTCTAATTACATTGTTAATACTAATTACACCCAAATTATCTAAATATTTCATACATTGAACCCTAAATACTCTTAAGAAACGCCAAGTCTGAGGTTGTAAGCGAGTCCAGATCTGGAAGATTAGAAAACACTGGTGTATTCCCAACGCTTTCCTCAGGTTGTGGTTGAACTGTATTTGGATCTGTATGATGTCCTGATTGGTGTTGAATGGTCTCTCGTGGTGCTTGGTTATCTTGAAATAGAGGGGATTTCTGATCGTCCAAGTATACACGCCACTCTCGCATTGAGTTGCAGTGAGTAATTCCCCTGTGCGTGAATCCATGATTTGCGCAGTCTATGCCTAAGTAATATGAGCACCCGCACGTTAGATCAACTCTCCTCCTGCGAACTGGTTTCTTCTTGGCTATTCTGTGTTGCACTTTGATTGGAACCTGAGTACAATGGGCTGTTGAGGGTGATGAATTCCGCATTCTTTAATGCCCAATATTTTAATGCTGAGTTTTTCTCTTCATCCAAGAATTCTTTATAGCTAGAGTTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTTCCGTATTTAGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGATAGTGGGGGTCGACGTCATCGATGACGTTATACCAGGCATCATTATTGTATACCTTTGGACTGAGATCAAGGTGACCACAGAGATAATTATGTGGGCCTAATGATCTTGCCCACATCGTCTTTCCTGTTCTACTATCACCTTCAATTACTATACTCATGGGTCTCAATGGCCGCGCAGCGGCACTGACGACATTCTCGGCAGCCCATTCCTCAAGTTCCTCTGGAACTTGATCGAAAGAAGAAGATAAAAAAGGAGAAATATATTCCTCTATTGGAGGAGTAAAAATCCTATCTAAATTAGAATTTAAATTATGAAACTGTAAAACAAAATCTTTAGGAGCCTTCTCCTTTAATATATTGAGGGCCGCTGCTTTGGACCCTGAATTGATTGCCTCGGCATATGCGTCGTTGGCAGATTGGCAACCTCCTCTAGCTGATCTTCCATCGATCTGGAAAACTCCATGATCAAGCACGTCTCCGTCTTTTTCCATGTATGCTTTAACATCTGTTGAGCTTTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGCTTGGGGATGTGAGATCGAAGAATCTGTTGTTTTGGCATTTGAATTTGCCTTCGAACTGGATGAGGACATGCAGGTGAGGAGACCCATCTTCGTGTAGTTCCCTGCAAATACGTATGAATAATTTATTAGTCGGTGTTGATAGGGCTGAGATTTGGGAAAGTGCCTCTTCTTTAGTAAGGGAGCACTGTGGATAAGTGAGGAAATAATTCTTGGCATTTATAAAAAATTTTTTTGGTTGAGGCATATTGACTGGTCAATCGGGTCCTCTCAAACTTGGCTATGCAATCGGGGAATGGGTCCTTATTTATAGTTGAGGACCTAAATGGCAAAGTCGTAAATTCCAAAAGAAATTCAAAATTTGAATTTTGAATCCAAAAGCGGCCATCCGAT
Gene Information
NCBI Accession
|
YP_001285869.1
|
Location
|
139-495 |
Protein Name
|
V2 |
Coding Region
|
ATGTGGGATCCATTAGTAAACGAGTTTCCCGAAACCGTTCACGGATTTAGGTGTATGTTAGCAGTTAAATATCTGCAGTTAGTAGAGAAGACCTATTCGCCTGACACATTAGGGCACGATTTAATTAGGGATTTAATTTCTGTTATTAGGGCTAGAAATTATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCCTCGAAGGTACGTCGCCGTCTGAACTTCGACAGCCCATATGTGAGCCGTGCTGCTGCCCCCACTGTCCGCGTCACAAAAGCAAGATCATGGACGAACAGGCCCATGAACAGAAAGCCCAAGATGTACAGGATGTACAGAAGTCCAGATGTCCCTAG |
Protein Sequence
|
MWDPLVNEFPETVHGFRCMLAVKYLQLVEKTYSPDTLGHDLIRDLISVIRARNYVEATSRYNHFHARLEGTSPSELRQPICEPCCCPHCPRHKSKIMDEQAHEQKAQDVQDVQKSRCP |
NCBI Accession
|
YP_001285870.1
|
Location
|
299-1069 |
Protein Name
|
V1 |
Coding Region
|
ATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCCTCGAAGGTACGTCGCCGTCTGAACTTCGACAGCCCATATGTGAGCCGTGCTGCTGCCCCCACTGTCCGCGTCACAAAAGCAAGATCATGGACGAACAGGCCCATGAACAGAAAGCCCAAGATGTACAGGATGTACAGAAGTCCAGATGTCCCTAGAGGATGTGAAGGCCCATGTAAGGTTCAATCGTTTGATGCTAAGAACGATATTGGTCACATGGGCAAGGTCTTATGTTTGTCCGACGTTACCCGTGGTATTGGGCTTACCCATCGAGTTGGCAAGCGTTTCTGTGTCAAATCACTTTATTTTGTTGGCAAGATCTGGATGGATGAAAATATTAAGGTTAAGAACCACACTAACACCGTTTTATTCTGGATAGTTAGAGATCGGCGTCCTACTGGAACGCCTAATGATTTTCAGCAGGTCTTTAATGTATATGATAATGAACCCAGCACTGCTACTGTGAAGAACGACCAGCGTGATCGTTACCAGGTTTTAAGGAGGTTCCAGGCAACGGTGACTGGTGGACAATATGCAGCGAAGGAGCAGGCGATTATTAGAAAGTTTTATCGTGTTAATAATTATGTAGTTTACAATCACCAGGAAGCTGGGAAGTACGAGAACCATACTGAAAATGCTTTGTTGTTGTATATGGCATGTACTCATGCCTCTAATCCTGTGTATGCTACTTTGAAAGTCAGAAGTTATTTCTATGACTCAGTGACGAATTAA |
Protein Sequence
|
MSKRPADIIISTPASKVRRRLNFDSPYVSRAAAPTVRVTKARSWTNRPMNRKPKMYRMYRSPDVPRGCEGPCKVQSFDAKNDIGHMGKVLCLSDVTRGIGLTHRVGKRFCVKSLYFVGKIWMDENIKVKNHTNTVLFWIVRDRRPTGTPNDFQQVFNVYDNEPSTATVKNDQRDRYQVLRRFQATVTGGQYAAKEQAIIRKFYRVNNYVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKVRSYFYDSVTN |
NCBI Accession
|
YP_001285871.1
|
Location
|
833-1003 |
Protein Name
|
C5 |
Coding Region
|
ATGAGTACATGCCATATACAACAACAAAGCATTTTCAGTATGGTTCTCGTACTTCCCAGCTTCCTGGTGATTGTAAACTACATAATTATTAACACGATAAAACTTTCTAATAATCGCCTGCTCCTTCGCTGCATATTGTCCACCAGTCACCGTTGCCTGGAACCTCCTTAA |
Protein Sequence
|
MSTCHIQQQSIFSMVLVLPSFLVIVNYIIINTIKLSNNRLLLRCILSTSHRCLEPP |
NCBI Accession
|
YP_001285872.1
|
Location
|
1066-1470 |
Protein Name
|
C3 |
Coding Region
|
ATGGATTCACGCACAGGGGAATTACTCACTGCAACTCAATGCGAGAGTGGCGTGTATACTTGGACGATCAGAAATCCCCTCTATTTCAAGATAACCAAGCACCACGAGAGACCATTCAACACCAATCAGGACATCATACAGATCCAAATACAGTTCAACCACAACCTGAGGAAAGCGTTGGGAATACACCAGTGTTTTCTAATCTTCCAGATCTGGACTCGCTTACAACCTCAGACTTGGCGTTTCTTAAGAGTATTTAGGGTTCAATGTATGAAATATTTAGATAATTTGGGTGTAATTAGTATTAACAATGTAATTAGAGCATGTGATCATGTATTATGGGATGTATTGGAAAAGACAGAATATGTAAGACAGTCTAATATAATAAAATTCAATCTTTATTAA |
Protein Sequence
|
MDSRTGELLTATQCESGVYTWTIRNPLYFKITKHHERPFNTNQDIIQIQIQFNHNLRKALGIHQCFLIFQIWTRLQPQTWRFLRVFRVQCMKYLDNLGVISINNVIRACDHVLWDVLEKTEYVRQSNIIKFNLY |
NCBI Accession
|
YP_001285873.1
|
Location
|
1211-1618 |
Protein Name
|
C2 |
Coding Region
|
ATGCGGAATTCATCACCCTCAACAGCCCATTGTACTCAGGTTCCAATCAAAGTGCAACACAGAATAGCCAAGAAGAAACCAGTTCGCAGGAGGAGAGTTGATCTAACGTGCGGGTGCTCATATTACTTAGGCATAGACTGCGCAAATCATGGATTCACGCACAGGGGAATTACTCACTGCAACTCAATGCGAGAGTGGCGTGTATACTTGGACGATCAGAAATCCCCTCTATTTCAAGATAACCAAGCACCACGAGAGACCATTCAACACCAATCAGGACATCATACAGATCCAAATACAGTTCAACCACAACCTGAGGAAAGCGTTGGGAATACACCAGTGTTTTCTAATCTTCCAGATCTGGACTCGCTTACAACCTCAGACTTGGCGTTTCTTAAGAGTATTTAG |
Protein Sequence
|
MRNSSPSTAHCTQVPIKVQHRIAKKKPVRRRRVDLTCGCSYYLGIDCANHGFTHRGITHCNSMREWRVYLDDQKSPLFQDNQAPRETIQHQSGHHTDPNTVQPQPEESVGNTPVFSNLPDLDSLTTSDLAFLKSI |
NCBI Accession
|
YP_001285874.1
|
Location
|
1518-2606 |
Protein Name
|
C1 |
Coding Region
|
ATGCCTCAACCAAAAAAATTTTTTATAAATGCCAAGAATTATTTCCTCACTTATCCACAGTGCTCCCTTACTAAAGAAGAGGCACTTTCCCAAATCTCAGCCCTATCAACACCGACTAATAAATTATTCATACGTATTTGCAGGGAACTACACGAAGATGGGTCTCCTCACCTGCATGTCCTCATCCAGTTCGAAGGCAAATTCAAATGCCAAAACAACAGATTCTTCGATCTCACATCCCCAAGCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAAAGCTCAACAGATGTTAAAGCATACATGGAAAAAGACGGAGACGTGCTTGATCATGGAGTTTTCCAGATCGATGGAAGATCAGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAATTCAGGGTCCAAAGCAGCGGCCCTCAATATATTAAAGGAGAAGGCTCCTAAAGATTTTGTTTTACAGTTTCATAATTTAAATTCTAATTTAGATAGGATTTTTACTCCTCCAATAGAGGAATATATTTCTCCTTTTTTATCTTCTTCTTTCGATCAAGTTCCAGAGGAACTTGAGGAATGGGCTGCCGAGAATGTCGTCAGTGCCGCTGCGCGGCCATTGAGACCCATGAGTATAGTAATTGAAGGTGATAGTAGAACAGGAAAGACGATGTGGGCAAGATCATTAGGCCCACATAATTATCTCTGTGGTCACCTTGATCTCAGTCCAAAGGTATACAATAATGATGCCTGGTATAACGTCATCGATGACGTCGACCCCCACTATCTAAAGCACTTTAAAGAATTCATGGGGGCCCAAAGGGACTGGCAAAGCAACACTAAATACGGAAAGCCAGTTCAAATTAAAGGCGGAATTCCCACTATCTTCCTCTGCAATCCAGGACCCAACTCTAGCTATAAAGAATTCTTGGATGAAGAGAAAAACTCAGCATTAAAATATTGGGCATTAAAGAATGCGGAATTCATCACCCTCAACAGCCCATTGTACTCAGGTTCCAATCAAAGTGCAACACAGAATAGCCAAGAAGAAACCAGTTCGCAGGAGGAGAGTTGA |
Protein Sequence
|
MPQPKKFFINAKNYFLTYPQCSLTKEEALSQISALSTPTNKLFIRICRELHEDGSPHLHVLIQFEGKFKCQNNRFFDLTSPSRSAHFHPNIQGAKSSTDVKAYMEKDGDVLDHGVFQIDGRSARGGCQSANDAYAEAINSGSKAAALNILKEKAPKDFVLQFHNLNSNLDRIFTPPIEEYISPFLSSSFDQVPEELEEWAAENVVSAAARPLRPMSIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYNNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNSALKYWALKNAEFITLNSPLYSGSNQSATQNSQEETSSQEES |
NCBI Accession
|
YP_001285875.1
|
Location
|
2156-2449 |
Protein Name
|
C4 |
Coding Region
|
ATGGGTCTCCTCACCTGCATGTCCTCATCCAGTTCGAAGGCAAATTCAAATGCCAAAACAACAGATTCTTCGATCTCACATCCCCAAGCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAAAGCTCAACAGATGTTAAAGCATACATGGAAAAAGACGGAGACGTGCTTGATCATGGAGTTTTCCAGATCGATGGAAGATCAGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAATTCAGGGTCCAAAGCAGCGGCCCTCAATATATTAA |
Protein Sequence
|
MGLLTCMSSSSSKANSNAKTTDSSISHPQAGQHISIRTFRELKAQQMLKHTWKKTETCLIMEFSRSMEDQLEEVANLPTTHMPRQSIQGPKQRPSIY |