Tobacco leaf curl Cuba virus
Basic Information
Genus |
Begomovirus
|
NCBI Assembly |
GCF_002310935.1 |
Isolate |
Cuba |
Release date |
2017/9/21 |
Submitter |
Chang-Sidorchuk,L., Gonzalez-Alvarez,H., Martinez-Zubiaur,Y., Navas-Castillo,J., Fiallo-Olive,E. |
Host |
|
Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGCGCCCCCCCCTGGTGCCGTACACTCACGCGCGCCCCCCCTTTCTCACTCGCGTTATCGTCCAATCATATTGCGCCTACCGCGCCTATTTATTTCAAACAACTTGGGCTCCAAGTTGTTGCGCGGTTTATAAATTTTAAGTTGTTTGGGCCTGTATCTTCAGCCCAAGATGCCTAAGCGCGATGCCCCATGGCGCCCGATGGCAGGAACTTCGAAGGTAAGTCGCAATGCAAATTATTCTCCCCGTGCAGGTATTGGGCCAAGAATGAACAGGGCATCGGAATGGGTTAACAGGCCTATGTACAGGAAGCCCAGGATCTATCGGACGCTACGGACGCCCGACATTCCGAGAGGCTGTGAAGGCCCGTGCAAGGTCCAGTCCTATGAACAGCGCCACGATATCTCTCACGTGGGTAAGGTGATGTGTATATCTGATGTCACACGTGGTAATGGCATTACCCACCGTGTGGGTAAGCGTTTTTGTGTTAAGTCTGTGTACATACTAGGTAAGATATGGATGGATGAGAACATCAAGCTCAAGAACCACACGAACAGCGTTATGTTCTGGTTGGTCAGAGACCGTCGACCGTATGGGACGCCTATGGATTTTGGACAGGTGTTCAACATGTTCGACAACGAACCCAGCACTGCCACGGTTAAGAACGATCTACGTGATCGTTACCAGGTTATGCACCGGTTCTATGGTAAGGTCACAGGTGGACAGTATGCCAGCAACGAGCAGGCTATTGTCAGGCGATTCTGGAAGGTCAACAACTATGTCGTCTACAACCACCAGGAAGCTGCCAAGTACGAGAACCACACTGAGAACGCGCTGTTATTGTACATGGCATGTACACATGCCTCTAACCCCGTGTATGCAACTCTGAAGATTCGAATCTATTTTTATGATTCGATAATGAATTAATAAATTTTGAATTTTATTGAATGATTTTCCAGTACATAATTCACATACGATCTGTCCGTTGCAAAACGAACAGCTCTAATTACATTGTTAATGGAAATCACTCCTAACTGATCTAAATACATATTAACTAAATACGTAAACCTAACTAAATAAGTTGACCCAGAAGCTGTCATCGATGTCGTCCAGACTTGGAAGTTCAGGTAAGCTTTGTGGAGATGCAACGCTCTCCTCAGGTTGTGGTTGAACCGTATCTGGATGTGGTACACTCTTGTTCTGGTGTATAGCAGATCCTCTACTCTGTATATCTTGAAATATAGGGGATTTTCTATCTCCCAGATATACACGCCATTCTCCGCCTGATGTGCAGTGATGAGTTCCCCGGTGCGTAAATCCATGTCCCGTGCAGTCTATATGGAAGTATATGGAGCACCCGCACCTAAGATCAATGCGTCTCCTCCTGACTGCCCTCCTCTTGGCCTGCCTGTGTGCTATCTTGATAGAGGGAGGATGTGAGGGTGATGAAGACCGCATTCTTTAACGTCCAGTTTTTGAGAGATGTGTTTTCCTCTTTGTTGAGGAAATCTTTATAGCTGGCACCCTCACCAGGATTGCAAAGCACGATAGCTGGGATCCCACCTTTAATTTGAACTGGCTTGCCGTATTTGCAATTGGATTGCCAGTCTTTTTGTGCGCCCAAGAGCTCTTTCCAGTGCTTTAGCTTTAAATAGTGCGGTGCGACATCATCAATGACGTTATACTCCACTTCGTTTGAAAAGACACGAGCATTGAAGTCCAGGTGTCCACTGAGATAGTTATGTGGGCCTAACGCACGTGCCCACATTGTCTTCCCTGTCCTTGAATCACCTTCGACTATGAGACTTACTGGTCTTCCGGCCGCGCAGCGGAACCTCTTCCAAAATACTCATCGGCCCAGTCTTGCATCTCTTCAGGAACGTTAGTGAAAGAGGAGAGTTGAAACGGAGGGACCCATGGTTCCGGAGCCTTTTGAAAGATCCGATGAGCATTTGCTACCAAATTATGATGCTGAAGGAAAAAATGTTGAGGCTGTTCCTCTTTTATTATTTGCAGAGCTTCCTCAGCAGAGGAGGCATTCAACGCCTTGGCATATGTGTCATTAGTTGTTTGGCAGCCTCCTCTAGCACTTCTTCCGTCAATCTGGAACTTTCCCCATTCAAGTGTATCTCCGTCCTTGTCGATGTAGGACTTGACGTCGGAGCTTGATTTAGCTCCCTGTATGTTCGGATGGAAATGTGCTGACCGAGATGGGGAGACCAGATCGAAGAATCTGTTATTCGTGCAGTTGTATTTGCCCTCGAATTGTATAAGCACGTGGAGATGAGGCTTCCCATCTTGATGGAGCTCTCTGCAGATTTTGATGAACTTCTTGTTCACCGGAGTATTTAGTTTTTTTAATTGGGAAAGTGCCTCCTCTTTGGTAAGGGAACACTGTGGATAAGTAAGGAAATAGTTTTTGGCATTAGCAATTGAAGAACCCTTCCGTGGCATTTTTGTAATATGAAGGGTGTTCCCCCAATTGCTCTGGCTCCAAACTTATCTATGAATTGGGGGTACTGGGGGTACATTTATACTAGAACCCTCAATAGAACTCTCAATCGTGTGCATACGCGTGGCGGCCATCCGCTATAATATT
ACCGGATGGCCGCGCGCCCCCCCCTGGTGCCGTACACTCACGCGCGCCCCCCCCTGGTCCCGTTCTCGTACGCGCCCACTCATTGGTGTTTGGATAAGACGCTCCTTTTTTTGTAACTGCTTTAATTCAAATTAAAGCTTATTTCCTGTCTGACAATTTGAATTATTTTCTCGCGACGATGGACCATGTACTATCTCATAGACGTGGCAAAAAAAGGACCAAGCTGCTGAGTCTATTTGCGTTTACTGTTGAACCATTCATGTATATATTTGTGTTGGTGGATATGAATTTTTTTATCCTACTCAGCAGTGGATCACGTTTATATCGTTATAAACTATTATATTGTCCACCCCTTATAATCATTGGATAATGTATCCTTTGAGGAATAAACGTGGATCGTATTTTACTGCACGTCGATATTATCCACGTAATACATTTTCTAGGCGTCCATCTACTTCCAAGAAACAAGATGGGAAACGACGAGCTGTAAATACCAATAAGACGAATGACGAGCCGAAGATGTCAGCCCAACGCATACATGAGAATCAGTATGGGCCTGATTTTGTTATGGCCCATAATACTGCTATCTCGACCTTCATTAGTTACCCGGGCTTGGGTTCAACTTTACCCAACCGAAGCAGGTCCTATATTAAGTTGAAACAACTACGTTTCAAAGGGACCGTGAAGATTGAACGTGTTCAATCGGATCTGAACATGGATGGTTCTACCCCGAAGGTTGAAGGAGTCTTCTCCCTTGTTGTTGTTGTGGATCGTAAACCCCATGTTGGTCCTTCTGGCTGTCTACAATCATTTGACGAACTCTTTGGTGCAAGGATCCACAGCCATGGCAACCTCAACGTAACCTCTGCATTGAAAGATCGTTATTATATTCGACACGTTTGCAAACGTGTATTCTCAGTGGAGAAGGACACGTTGATGGTAGATGTGGAGGGATTCATTCCCCTCTCTAACAAGCGTTTCAATTGTTGGTCTACGTTCAAGGATCTTGATCGTGATTCATGCAAGGGTGTTTATGACAATATAAGCAAGAACGCCCTCTTAGTTTATTATTGTTGGATGTCGGATACGATGTCTACCGCATCTACCTTTGTATCGTTTGACCTTGATTATGTCGGTTGATCAATGAATAATGTTTAACCAAAGATGATTATCTTATTTGGACAGTGAAAAGATAACATTTATTTTAATGATTTGGCTTGAGAAGCCTGACAATTACTATTAATACATTCTTGGACAGTTGTCCTAACTAACTCGTTCAACTGGCCCATCGACATTGTTATGTTGGAACCCGCTCTTTGGGCCCCCACGATCGAAGCAGACTCTCCTGGGTCTAGAACGCTGGTTCCCAGCCTGTTTAGATGTCTATATGGATGGAGTTCGTTCTCCATCTCTGAGTCCGCGTCTGACGCGCCTGTACCTATTGTACTTCTAGAAGCCCACGACTCGCCAGGCCTAATCTCGATTGGGCCTCTTAGCCCAAGTCTTGACATTGATGCGCATCTTATGGGCTTCCTCTCCCATTTCCCATAGTCGACATGGGAGAAGTCCACGTCTTTGTCGGTGAACTGTTTGGACAGGATCTTGACTGTCGGTGCCCGGAATGGAATGTCGACCGAGTGTTTCGCCGTAGACAATTTCAGCTTGCCCTTGAACTTGGCAAAGTGGGTCCTTTGATGAACATTTGTATCGCAAACGCGATAGTACAATTTCCATGGAATTGGGTCTTTGAGTGAGAAGAACGAAGCCGAGAAATAGTGGAGATCTATGTTGCACCTGATCGGATAAGTCCAGGACGCCTGTAAGGACTCATTGTCCGTCATTCTTTTATCGTGGATCTCCACTATTACCGTCCCCGTGGCGTTGATCGGAACTTGTTGCCTGTATTCTATGACGCAGTGGTCTATCTTCATACAGCTACGACTGAGCCTAGCTGTCAACTGAGACGCCGTCGAAGGAAATTGCAGGATTATCTCAGTTAGGTCATGTGAAAGCTGGTACTCGTCCCGGTGAGACTCTATGTAGTTGAATGCGTTAGGAGGATTAACTAACTGAGAATCCATATGGAGAAATAAGGCCGCGCAGCGGAATCGATTGATGAAGATGAATCGGAAAAAAGATGACAGTCTAGCTCGTGAAGAACAGTATATACTATTCTGCAGAAGAAGAAAGAAATATATCTGGAAAACCCAGAAAATTGATGAAGATGTTGCTAGGCACTCTTTAAATCTCTCTCGAAGATGAATAGTTTTTCTGTGAAAGAGATAATTGCACTGTAAAATTATAATTCTGGGTTTTCTGGGTTTCTATTTGATGAACATATATAGGGAAAAGCAAATATTGTTAATGACTATGAATTGTGTTTGATAGTGTTTATATAGAAACCAGAGTGATGCAGTGGCATATTTGTAATATGAAGGGTGTTCCCCCAATTGATCTGGCTCCAAACTTATCTATGAATTGGGGGTACTGGGGGTACATTTATACTAGAACCCTCAATAGAACTCTCAATCGTGTGCATACACGTGGCGGCCATCCGCTATAATATT
Gene Information
NCBI Accession
|
YP_009428561.1
|
Location
|
182-937 |
Gene Name
|
AC1 |
Protein Name
|
coat protein |
Coding Region
|
ATGCCTAAGCGCGATGCCCCATGGCGCCCGATGGCAGGAACTTCGAAGGTAAGTCGCAATGCAAATTATTCTCCCCGTGCAGGTATTGGGCCAAGAATGAACAGGGCATCGGAATGGGTTAACAGGCCTATGTACAGGAAGCCCAGGATCTATCGGACGCTACGGACGCCCGACATTCCGAGAGGCTGTGAAGGCCCGTGCAAGGTCCAGTCCTATGAACAGCGCCACGATATCTCTCACGTGGGTAAGGTGATGTGTATATCTGATGTCACACGTGGTAATGGCATTACCCACCGTGTGGGTAAGCGTTTTTGTGTTAAGTCTGTGTACATACTAGGTAAGATATGGATGGATGAGAACATCAAGCTCAAGAACCACACGAACAGCGTTATGTTCTGGTTGGTCAGAGACCGTCGACCGTATGGGACGCCTATGGATTTTGGACAGGTGTTCAACATGTTCGACAACGAACCCAGCACTGCCACGGTTAAGAACGATCTACGTGATCGTTACCAGGTTATGCACCGGTTCTATGGTAAGGTCACAGGTGGACAGTATGCCAGCAACGAGCAGGCTATTGTCAGGCGATTCTGGAAGGTCAACAACTATGTCGTCTACAACCACCAGGAAGCTGCCAAGTACGAGAACCACACTGAGAACGCGCTGTTATTGTACATGGCATGTACACATGCCTCTAACCCCGTGTATGCAACTCTGAAGATTCGAATCTATTTTTATGATTCGATAATGAATTAA |
Protein Sequence
|
MPKRDAPWRPMAGTSKVSRNANYSPRAGIGPRMNRASEWVNRPMYRKPRIYRTLRTPDIPRGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGITHRVGKRFCVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATVKNDLRDRYQVMHRFYGKVTGGQYASNEQAIVRRFWKVNNYVVYNHQEAAKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSIMN |
NCBI Accession
|
YP_009428562.1
|
Location
|
934-1332 |
Gene Name
|
AC3 |
Protein Name
|
REn |
Coding Region
|
ATGGATTTACGCACCGGGGAACTCATCACTGCACATCAGGCGGAGAATGGCGTGTATATCTGGGAGATAGAAAATCCCCTATATTTCAAGATATACAGAGTAGAGGATCTGCTATACACCAGAACAAGAGTGTACCACATCCAGATACGGTTCAACCACAACCTGAGGAGAGCGTTGCATCTCCACAAAGCTTACCTGAACTTCCAAGTCTGGACGACATCGATGACAGCTTCTGGGTCAACTTATTTAGTTAGGTTTACGTATTTAGTTAATATGTATTTAGATCAGTTAGGAGTGATTTCCATTAACAATGTAATTAGAGCTGTTCGTTTTGCAACGGACAGATCGTATGTGAATTATGTACTGGAAAATCATTCAATAAAATTCAAAATTTATTAA |
Protein Sequence
|
MDLRTGELITAHQAENGVYIWEIENPLYFKIYRVEDLLYTRTRVYHIQIRFNHNLRRALHLHKAYLNFQVWTTSMTASGSTYLVRFTYLVNMYLDQLGVISINNVIRAVRFATDRSYVNYVLENHSIKFKIY |
NCBI Accession
|
YP_009428563.1
|
Location
|
1079-1468 |
Gene Name
|
AC2 |
Protein Name
|
TrAP |
Coding Region
|
ATGCGGTCTTCATCACCCTCACATCCTCCCTCTATCAAGATAGCACACAGGCAGGCCAAGAGGAGGGCAGTCAGGAGGAGACGCATTGATCTTAGGTGCGGGTGCTCCATATACTTCCATATAGACTGCACGGGACATGGATTTACGCACCGGGGAACTCATCACTGCACATCAGGCGGAGAATGGCGTGTATATCTGGGAGATAGAAAATCCCCTATATTTCAAGATATACAGAGTAGAGGATCTGCTATACACCAGAACAAGAGTGTACCACATCCAGATACGGTTCAACCACAACCTGAGGAGAGCGTTGCATCTCCACAAAGCTTACCTGAACTTCCAAGTCTGGACGACATCGATGACAGCTTCTGGGTCAACTTATTTAGTTAG |
Protein Sequence
|
MRSSSPSHPPSIKIAHRQAKRRAVRRRRIDLRCGCSIYFHIDCTGHGFTHRGTHHCTSGGEWRVYLGDRKSPIFQDIQSRGSAIHQNKSVPHPDTVQPQPEESVASPQSLPELPSLDDIDDSFWVNLFS |
NCBI Accession
|
YP_009428564.1
|
Location
|
1817-2464 |
Gene Name
|
AV1 |
Protein Name
|
replication protein |
Coding Region
|
ATGCCACGGAAGGGTTCTTCAATTGCTAATGCCAAAAACTATTTCCTTACTTATCCACAGTGTTCCCTTACCAAAGAGGAGGCACTTTCCCAATTAAAAAAACTAAATACTCCGGTGAACAAGAAGTTCATCAAAATCTGCAGAGAGCTCCATCAAGATGGGAAGCCTCATCTCCACGTGCTTATACAATTCGAGGGCAAATACAACTGCACGAATAACAGATTCTTCGATCTGGTCTCCCCATCTCGGTCAGCACATTTCCATCCGAACATACAGGGAGCTAAATCAAGCTCCGACGTCAAGTCCTACATCGACAAGGACGGAGATACACTTGAATGGGGAAAGTTCCAGATTGACGGAAGAAGTGCTAGAGGAGGCTGCCAAACAACTAATGACACATATGCCAAGGCGTTGAATGCCTCCTCTGCTGAGGAAGCTCTGCAAATAATAAAAGAGGAACAGCCTCAACATTTTTTCCTTCAGCATCATAATTTGGTAGCAAATGCTCATCGGATCTTTCAAAAGGCTCCGGAACCATGGGTCCCTCCGTTTCAACTCTCCTCTTTCACTAACGTTCCTGAAGAGATGCAAGACTGGGCCGATGAGTATTTTGGAAGAGGTTCCGCTGCGCGGCCGGAAGACCAGTAA |
Protein Sequence
|
MPRKGSSIANAKNYFLTYPQCSLTKEEALSQLKKLNTPVNKKFIKICRELHQDGKPHLHVLIQFEGKYNCTNNRFFDLVSPSRSAHFHPNIQGAKSSSDVKSYIDKDGDTLEWGKFQIDGRSARGGCQTTNDTYAKALNASSAEEALQIIKEEQPQHFFLQHHNLVANAHRIFQKAPEPWVPPFQLSSFTNVPEEMQDWADEYFGRGSAARPEDQ |
NCBI Accession
|
YP_009428565.1
|
Location
|
2050-2307 |
Gene Name
|
AC4 |
Protein Name
|
AC4 protein |
Coding Region
|
ATGGGAAGCCTCATCTCCACGTGCTTATACAATTCGAGGGCAAATACAACTGCACGAATAACAGATTCTTCGATCTGGTCTCCCCATCTCGGTCAGCACATTTCCATCCGAACATACAGGGAGCTAAATCAAGCTCCGACGTCAAGTCCTACATCGACAAGGACGGAGATACACTTGAATGGGGAAAGTTCCAGATTGACGGAAGAAGTGCTAGAGGAGGCTGCCAAACAACTAATGACACATATGCCAAGGCGTTGA |
Protein Sequence
|
MGSLISTCLYNSRANTTARITDSSIWSPHLGQHISIRTYRELNQAPTSSPTSTRTEIHLNGESSRLTEEVLEEAAKQLMTHMPRR |
NCBI Accession
|
YP_009428566.1
|
Location
|
370-1140 |
Gene Name
|
BV1 |
Protein Name
|
NSP |
Coding Region
|
ATGTATCCTTTGAGGAATAAACGTGGATCGTATTTTACTGCACGTCGATATTATCCACGTAATACATTTTCTAGGCGTCCATCTACTTCCAAGAAACAAGATGGGAAACGACGAGCTGTAAATACCAATAAGACGAATGACGAGCCGAAGATGTCAGCCCAACGCATACATGAGAATCAGTATGGGCCTGATTTTGTTATGGCCCATAATACTGCTATCTCGACCTTCATTAGTTACCCGGGCTTGGGTTCAACTTTACCCAACCGAAGCAGGTCCTATATTAAGTTGAAACAACTACGTTTCAAAGGGACCGTGAAGATTGAACGTGTTCAATCGGATCTGAACATGGATGGTTCTACCCCGAAGGTTGAAGGAGTCTTCTCCCTTGTTGTTGTTGTGGATCGTAAACCCCATGTTGGTCCTTCTGGCTGTCTACAATCATTTGACGAACTCTTTGGTGCAAGGATCCACAGCCATGGCAACCTCAACGTAACCTCTGCATTGAAAGATCGTTATTATATTCGACACGTTTGCAAACGTGTATTCTCAGTGGAGAAGGACACGTTGATGGTAGATGTGGAGGGATTCATTCCCCTCTCTAACAAGCGTTTCAATTGTTGGTCTACGTTCAAGGATCTTGATCGTGATTCATGCAAGGGTGTTTATGACAATATAAGCAAGAACGCCCTCTTAGTTTATTATTGTTGGATGTCGGATACGATGTCTACCGCATCTACCTTTGTATCGTTTGACCTTGATTATGTCGGTTGA |
Protein Sequence
|
MYPLRNKRGSYFTARRYYPRNTFSRRPSTSKKQDGKRRAVNTNKTNDEPKMSAQRIHENQYGPDFVMAHNTAISTFISYPGLGSTLPNRSRSYIKLKQLRFKGTVKIERVQSDLNMDGSTPKVEGVFSLVVVVDRKPHVGPSGCLQSFDELFGARIHSHGNLNVTSALKDRYYIRHVCKRVFSVEKDTLMVDVEGFIPLSNKRFNCWSTFKDLDRDSCKGVYDNISKNALLVYYCWMSDTMSTASTFVSFDLDYVG |
NCBI Accession
|
YP_009428567.1
|
Location
|
1200-2081 |
Gene Name
|
BC1 |
Protein Name
|
MP |
Coding Region
|
ATGGATTCTCAGTTAGTTAATCCTCCTAACGCATTCAACTACATAGAGTCTCACCGGGACGAGTACCAGCTTTCACATGACCTAACTGAGATAATCCTGCAATTTCCTTCGACGGCGTCTCAGTTGACAGCTAGGCTCAGTCGTAGCTGTATGAAGATAGACCACTGCGTCATAGAATACAGGCAACAAGTTCCGATCAACGCCACGGGGACGGTAATAGTGGAGATCCACGATAAAAGAATGACGGACAATGAGTCCTTACAGGCGTCCTGGACTTATCCGATCAGGTGCAACATAGATCTCCACTATTTCTCGGCTTCGTTCTTCTCACTCAAAGACCCAATTCCATGGAAATTGTACTATCGCGTTTGCGATACAAATGTTCATCAAAGGACCCACTTTGCCAAGTTCAAGGGCAAGCTGAAATTGTCTACGGCGAAACACTCGGTCGACATTCCATTCCGGGCACCGACAGTCAAGATCCTGTCCAAACAGTTCACCGACAAAGACGTGGACTTCTCCCATGTCGACTATGGGAAATGGGAGAGGAAGCCCATAAGATGCGCATCAATGTCAAGACTTGGGCTAAGAGGCCCAATCGAGATTAGGCCTGGCGAGTCGTGGGCTTCTAGAAGTACAATAGGTACAGGCGCGTCAGACGCGGACTCAGAGATGGAGAACGAACTCCATCCATATAGACATCTAAACAGGCTGGGAACCAGCGTTCTAGACCCAGGAGAGTCTGCTTCGATCGTGGGGGCCCAAAGAGCGGGTTCCAACATAACAATGTCGATGGGCCAGTTGAACGAGTTAGTTAGGACAACTGTCCAAGAATGTATTAATAGTAATTGTCAGGCTTCTCAAGCCAAATCATTAAAATAA |
Protein Sequence
|
MDSQLVNPPNAFNYIESHRDEYQLSHDLTEIILQFPSTASQLTARLSRSCMKIDHCVIEYRQQVPINATGTVIVEIHDKRMTDNESLQASWTYPIRCNIDLHYFSASFFSLKDPIPWKLYYRVCDTNVHQRTHFAKFKGKLKLSTAKHSVDIPFRAPTVKILSKQFTDKDVDFSHVDYGKWERKPIRCASMSRLGLRGPIEIRPGESWASRSTIGTGASDADSEMENELHPYRHLNRLGTSVLDPGESASIVGAQRAGSNITMSMGQLNELVRTTVQECINSNCQASQAKSLK |