Tobacco leaf curl Cuba virus


Basic Information

Genus Begomovirus
NCBI Assembly GCF_002310935.1
Isolate Cuba
Release date 2017/9/21
Submitter Chang-Sidorchuk,L., Gonzalez-Alvarez,H., Martinez-Zubiaur,Y., Navas-Castillo,J., Fiallo-Olive,E.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_035887
ACCGGATGGCCGCGCGCCCCCCCCTGGTGCCGTACACTCACGCGCGCCCCCCCTTTCTCACTCGCGTTATCGTCCAATCATATTGCGCCTACCGCGCCTATTTATTTCAAACAACTTGGGCTCCAAGTTGTTGCGCGGTTTATAAATTTTAAGTTGTTTGGGCCTGTATCTTCAGCCCAAGATGCCTAAGCGCGATGCCCCATGGCGCCCGATGGCAGGAACTTCGAAGGTAAGTCGCAATGCAAATTATTCTCCCCGTGCAGGTATTGGGCCAAGAATGAACAGGGCATCGGAATGGGTTAACAGGCCTATGTACAGGAAGCCCAGGATCTATCGGACGCTACGGACGCCCGACATTCCGAGAGGCTGTGAAGGCCCGTGCAAGGTCCAGTCCTATGAACAGCGCCACGATATCTCTCACGTGGGTAAGGTGATGTGTATATCTGATGTCACACGTGGTAATGGCATTACCCACCGTGTGGGTAAGCGTTTTTGTGTTAAGTCTGTGTACATACTAGGTAAGATATGGATGGATGAGAACATCAAGCTCAAGAACCACACGAACAGCGTTATGTTCTGGTTGGTCAGAGACCGTCGACCGTATGGGACGCCTATGGATTTTGGACAGGTGTTCAACATGTTCGACAACGAACCCAGCACTGCCACGGTTAAGAACGATCTACGTGATCGTTACCAGGTTATGCACCGGTTCTATGGTAAGGTCACAGGTGGACAGTATGCCAGCAACGAGCAGGCTATTGTCAGGCGATTCTGGAAGGTCAACAACTATGTCGTCTACAACCACCAGGAAGCTGCCAAGTACGAGAACCACACTGAGAACGCGCTGTTATTGTACATGGCATGTACACATGCCTCTAACCCCGTGTATGCAACTCTGAAGATTCGAATCTATTTTTATGATTCGATAATGAATTAATAAATTTTGAATTTTATTGAATGATTTTCCAGTACATAATTCACATACGATCTGTCCGTTGCAAAACGAACAGCTCTAATTACATTGTTAATGGAAATCACTCCTAACTGATCTAAATACATATTAACTAAATACGTAAACCTAACTAAATAAGTTGACCCAGAAGCTGTCATCGATGTCGTCCAGACTTGGAAGTTCAGGTAAGCTTTGTGGAGATGCAACGCTCTCCTCAGGTTGTGGTTGAACCGTATCTGGATGTGGTACACTCTTGTTCTGGTGTATAGCAGATCCTCTACTCTGTATATCTTGAAATATAGGGGATTTTCTATCTCCCAGATATACACGCCATTCTCCGCCTGATGTGCAGTGATGAGTTCCCCGGTGCGTAAATCCATGTCCCGTGCAGTCTATATGGAAGTATATGGAGCACCCGCACCTAAGATCAATGCGTCTCCTCCTGACTGCCCTCCTCTTGGCCTGCCTGTGTGCTATCTTGATAGAGGGAGGATGTGAGGGTGATGAAGACCGCATTCTTTAACGTCCAGTTTTTGAGAGATGTGTTTTCCTCTTTGTTGAGGAAATCTTTATAGCTGGCACCCTCACCAGGATTGCAAAGCACGATAGCTGGGATCCCACCTTTAATTTGAACTGGCTTGCCGTATTTGCAATTGGATTGCCAGTCTTTTTGTGCGCCCAAGAGCTCTTTCCAGTGCTTTAGCTTTAAATAGTGCGGTGCGACATCATCAATGACGTTATACTCCACTTCGTTTGAAAAGACACGAGCATTGAAGTCCAGGTGTCCACTGAGATAGTTATGTGGGCCTAACGCACGTGCCCACATTGTCTTCCCTGTCCTTGAATCACCTTCGACTATGAGACTTACTGGTCTTCCGGCCGCGCAGCGGAACCTCTTCCAAAATACTCATCGGCCCAGTCTTGCATCTCTTCAGGAACGTTAGTGAAAGAGGAGAGTTGAAACGGAGGGACCCATGGTTCCGGAGCCTTTTGAAAGATCCGATGAGCATTTGCTACCAAATTATGATGCTGAAGGAAAAAATGTTGAGGCTGTTCCTCTTTTATTATTTGCAGAGCTTCCTCAGCAGAGGAGGCATTCAACGCCTTGGCATATGTGTCATTAGTTGTTTGGCAGCCTCCTCTAGCACTTCTTCCGTCAATCTGGAACTTTCCCCATTCAAGTGTATCTCCGTCCTTGTCGATGTAGGACTTGACGTCGGAGCTTGATTTAGCTCCCTGTATGTTCGGATGGAAATGTGCTGACCGAGATGGGGAGACCAGATCGAAGAATCTGTTATTCGTGCAGTTGTATTTGCCCTCGAATTGTATAAGCACGTGGAGATGAGGCTTCCCATCTTGATGGAGCTCTCTGCAGATTTTGATGAACTTCTTGTTCACCGGAGTATTTAGTTTTTTTAATTGGGAAAGTGCCTCCTCTTTGGTAAGGGAACACTGTGGATAAGTAAGGAAATAGTTTTTGGCATTAGCAATTGAAGAACCCTTCCGTGGCATTTTTGTAATATGAAGGGTGTTCCCCCAATTGCTCTGGCTCCAAACTTATCTATGAATTGGGGGTACTGGGGGTACATTTATACTAGAACCCTCAATAGAACTCTCAATCGTGTGCATACGCGTGGCGGCCATCCGCTATAATATT

NC_035888
ACCGGATGGCCGCGCGCCCCCCCCTGGTGCCGTACACTCACGCGCGCCCCCCCCTGGTCCCGTTCTCGTACGCGCCCACTCATTGGTGTTTGGATAAGACGCTCCTTTTTTTGTAACTGCTTTAATTCAAATTAAAGCTTATTTCCTGTCTGACAATTTGAATTATTTTCTCGCGACGATGGACCATGTACTATCTCATAGACGTGGCAAAAAAAGGACCAAGCTGCTGAGTCTATTTGCGTTTACTGTTGAACCATTCATGTATATATTTGTGTTGGTGGATATGAATTTTTTTATCCTACTCAGCAGTGGATCACGTTTATATCGTTATAAACTATTATATTGTCCACCCCTTATAATCATTGGATAATGTATCCTTTGAGGAATAAACGTGGATCGTATTTTACTGCACGTCGATATTATCCACGTAATACATTTTCTAGGCGTCCATCTACTTCCAAGAAACAAGATGGGAAACGACGAGCTGTAAATACCAATAAGACGAATGACGAGCCGAAGATGTCAGCCCAACGCATACATGAGAATCAGTATGGGCCTGATTTTGTTATGGCCCATAATACTGCTATCTCGACCTTCATTAGTTACCCGGGCTTGGGTTCAACTTTACCCAACCGAAGCAGGTCCTATATTAAGTTGAAACAACTACGTTTCAAAGGGACCGTGAAGATTGAACGTGTTCAATCGGATCTGAACATGGATGGTTCTACCCCGAAGGTTGAAGGAGTCTTCTCCCTTGTTGTTGTTGTGGATCGTAAACCCCATGTTGGTCCTTCTGGCTGTCTACAATCATTTGACGAACTCTTTGGTGCAAGGATCCACAGCCATGGCAACCTCAACGTAACCTCTGCATTGAAAGATCGTTATTATATTCGACACGTTTGCAAACGTGTATTCTCAGTGGAGAAGGACACGTTGATGGTAGATGTGGAGGGATTCATTCCCCTCTCTAACAAGCGTTTCAATTGTTGGTCTACGTTCAAGGATCTTGATCGTGATTCATGCAAGGGTGTTTATGACAATATAAGCAAGAACGCCCTCTTAGTTTATTATTGTTGGATGTCGGATACGATGTCTACCGCATCTACCTTTGTATCGTTTGACCTTGATTATGTCGGTTGATCAATGAATAATGTTTAACCAAAGATGATTATCTTATTTGGACAGTGAAAAGATAACATTTATTTTAATGATTTGGCTTGAGAAGCCTGACAATTACTATTAATACATTCTTGGACAGTTGTCCTAACTAACTCGTTCAACTGGCCCATCGACATTGTTATGTTGGAACCCGCTCTTTGGGCCCCCACGATCGAAGCAGACTCTCCTGGGTCTAGAACGCTGGTTCCCAGCCTGTTTAGATGTCTATATGGATGGAGTTCGTTCTCCATCTCTGAGTCCGCGTCTGACGCGCCTGTACCTATTGTACTTCTAGAAGCCCACGACTCGCCAGGCCTAATCTCGATTGGGCCTCTTAGCCCAAGTCTTGACATTGATGCGCATCTTATGGGCTTCCTCTCCCATTTCCCATAGTCGACATGGGAGAAGTCCACGTCTTTGTCGGTGAACTGTTTGGACAGGATCTTGACTGTCGGTGCCCGGAATGGAATGTCGACCGAGTGTTTCGCCGTAGACAATTTCAGCTTGCCCTTGAACTTGGCAAAGTGGGTCCTTTGATGAACATTTGTATCGCAAACGCGATAGTACAATTTCCATGGAATTGGGTCTTTGAGTGAGAAGAACGAAGCCGAGAAATAGTGGAGATCTATGTTGCACCTGATCGGATAAGTCCAGGACGCCTGTAAGGACTCATTGTCCGTCATTCTTTTATCGTGGATCTCCACTATTACCGTCCCCGTGGCGTTGATCGGAACTTGTTGCCTGTATTCTATGACGCAGTGGTCTATCTTCATACAGCTACGACTGAGCCTAGCTGTCAACTGAGACGCCGTCGAAGGAAATTGCAGGATTATCTCAGTTAGGTCATGTGAAAGCTGGTACTCGTCCCGGTGAGACTCTATGTAGTTGAATGCGTTAGGAGGATTAACTAACTGAGAATCCATATGGAGAAATAAGGCCGCGCAGCGGAATCGATTGATGAAGATGAATCGGAAAAAAGATGACAGTCTAGCTCGTGAAGAACAGTATATACTATTCTGCAGAAGAAGAAAGAAATATATCTGGAAAACCCAGAAAATTGATGAAGATGTTGCTAGGCACTCTTTAAATCTCTCTCGAAGATGAATAGTTTTTCTGTGAAAGAGATAATTGCACTGTAAAATTATAATTCTGGGTTTTCTGGGTTTCTATTTGATGAACATATATAGGGAAAAGCAAATATTGTTAATGACTATGAATTGTGTTTGATAGTGTTTATATAGAAACCAGAGTGATGCAGTGGCATATTTGTAATATGAAGGGTGTTCCCCCAATTGATCTGGCTCCAAACTTATCTATGAATTGGGGGTACTGGGGGTACATTTATACTAGAACCCTCAATAGAACTCTCAATCGTGTGCATACACGTGGCGGCCATCCGCTATAATATT

Gene Information

NCBI Accession YP_009428561.1
Location 182-937
Gene Name AC1
Protein Name coat protein
Coding Region ATGCCTAAGCGCGATGCCCCATGGCGCCCGATGGCAGGAACTTCGAAGGTAAGTCGCAATGCAAATTATTCTCCCCGTGCAGGTATTGGGCCAAGAATGAACAGGGCATCGGAATGGGTTAACAGGCCTATGTACAGGAAGCCCAGGATCTATCGGACGCTACGGACGCCCGACATTCCGAGAGGCTGTGAAGGCCCGTGCAAGGTCCAGTCCTATGAACAGCGCCACGATATCTCTCACGTGGGTAAGGTGATGTGTATATCTGATGTCACACGTGGTAATGGCATTACCCACCGTGTGGGTAAGCGTTTTTGTGTTAAGTCTGTGTACATACTAGGTAAGATATGGATGGATGAGAACATCAAGCTCAAGAACCACACGAACAGCGTTATGTTCTGGTTGGTCAGAGACCGTCGACCGTATGGGACGCCTATGGATTTTGGACAGGTGTTCAACATGTTCGACAACGAACCCAGCACTGCCACGGTTAAGAACGATCTACGTGATCGTTACCAGGTTATGCACCGGTTCTATGGTAAGGTCACAGGTGGACAGTATGCCAGCAACGAGCAGGCTATTGTCAGGCGATTCTGGAAGGTCAACAACTATGTCGTCTACAACCACCAGGAAGCTGCCAAGTACGAGAACCACACTGAGAACGCGCTGTTATTGTACATGGCATGTACACATGCCTCTAACCCCGTGTATGCAACTCTGAAGATTCGAATCTATTTTTATGATTCGATAATGAATTAA
Protein Sequence MPKRDAPWRPMAGTSKVSRNANYSPRAGIGPRMNRASEWVNRPMYRKPRIYRTLRTPDIPRGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGITHRVGKRFCVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATVKNDLRDRYQVMHRFYGKVTGGQYASNEQAIVRRFWKVNNYVVYNHQEAAKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSIMN

NCBI Accession YP_009428562.1
Location 934-1332
Gene Name AC3
Protein Name REn
Coding Region ATGGATTTACGCACCGGGGAACTCATCACTGCACATCAGGCGGAGAATGGCGTGTATATCTGGGAGATAGAAAATCCCCTATATTTCAAGATATACAGAGTAGAGGATCTGCTATACACCAGAACAAGAGTGTACCACATCCAGATACGGTTCAACCACAACCTGAGGAGAGCGTTGCATCTCCACAAAGCTTACCTGAACTTCCAAGTCTGGACGACATCGATGACAGCTTCTGGGTCAACTTATTTAGTTAGGTTTACGTATTTAGTTAATATGTATTTAGATCAGTTAGGAGTGATTTCCATTAACAATGTAATTAGAGCTGTTCGTTTTGCAACGGACAGATCGTATGTGAATTATGTACTGGAAAATCATTCAATAAAATTCAAAATTTATTAA
Protein Sequence MDLRTGELITAHQAENGVYIWEIENPLYFKIYRVEDLLYTRTRVYHIQIRFNHNLRRALHLHKAYLNFQVWTTSMTASGSTYLVRFTYLVNMYLDQLGVISINNVIRAVRFATDRSYVNYVLENHSIKFKIY

NCBI Accession YP_009428563.1
Location 1079-1468
Gene Name AC2
Protein Name TrAP
Coding Region ATGCGGTCTTCATCACCCTCACATCCTCCCTCTATCAAGATAGCACACAGGCAGGCCAAGAGGAGGGCAGTCAGGAGGAGACGCATTGATCTTAGGTGCGGGTGCTCCATATACTTCCATATAGACTGCACGGGACATGGATTTACGCACCGGGGAACTCATCACTGCACATCAGGCGGAGAATGGCGTGTATATCTGGGAGATAGAAAATCCCCTATATTTCAAGATATACAGAGTAGAGGATCTGCTATACACCAGAACAAGAGTGTACCACATCCAGATACGGTTCAACCACAACCTGAGGAGAGCGTTGCATCTCCACAAAGCTTACCTGAACTTCCAAGTCTGGACGACATCGATGACAGCTTCTGGGTCAACTTATTTAGTTAG
Protein Sequence MRSSSPSHPPSIKIAHRQAKRRAVRRRRIDLRCGCSIYFHIDCTGHGFTHRGTHHCTSGGEWRVYLGDRKSPIFQDIQSRGSAIHQNKSVPHPDTVQPQPEESVASPQSLPELPSLDDIDDSFWVNLFS

NCBI Accession YP_009428564.1
Location 1817-2464
Gene Name AV1
Protein Name replication protein
Coding Region ATGCCACGGAAGGGTTCTTCAATTGCTAATGCCAAAAACTATTTCCTTACTTATCCACAGTGTTCCCTTACCAAAGAGGAGGCACTTTCCCAATTAAAAAAACTAAATACTCCGGTGAACAAGAAGTTCATCAAAATCTGCAGAGAGCTCCATCAAGATGGGAAGCCTCATCTCCACGTGCTTATACAATTCGAGGGCAAATACAACTGCACGAATAACAGATTCTTCGATCTGGTCTCCCCATCTCGGTCAGCACATTTCCATCCGAACATACAGGGAGCTAAATCAAGCTCCGACGTCAAGTCCTACATCGACAAGGACGGAGATACACTTGAATGGGGAAAGTTCCAGATTGACGGAAGAAGTGCTAGAGGAGGCTGCCAAACAACTAATGACACATATGCCAAGGCGTTGAATGCCTCCTCTGCTGAGGAAGCTCTGCAAATAATAAAAGAGGAACAGCCTCAACATTTTTTCCTTCAGCATCATAATTTGGTAGCAAATGCTCATCGGATCTTTCAAAAGGCTCCGGAACCATGGGTCCCTCCGTTTCAACTCTCCTCTTTCACTAACGTTCCTGAAGAGATGCAAGACTGGGCCGATGAGTATTTTGGAAGAGGTTCCGCTGCGCGGCCGGAAGACCAGTAA
Protein Sequence MPRKGSSIANAKNYFLTYPQCSLTKEEALSQLKKLNTPVNKKFIKICRELHQDGKPHLHVLIQFEGKYNCTNNRFFDLVSPSRSAHFHPNIQGAKSSSDVKSYIDKDGDTLEWGKFQIDGRSARGGCQTTNDTYAKALNASSAEEALQIIKEEQPQHFFLQHHNLVANAHRIFQKAPEPWVPPFQLSSFTNVPEEMQDWADEYFGRGSAARPEDQ

NCBI Accession YP_009428565.1
Location 2050-2307
Gene Name AC4
Protein Name AC4 protein
Coding Region ATGGGAAGCCTCATCTCCACGTGCTTATACAATTCGAGGGCAAATACAACTGCACGAATAACAGATTCTTCGATCTGGTCTCCCCATCTCGGTCAGCACATTTCCATCCGAACATACAGGGAGCTAAATCAAGCTCCGACGTCAAGTCCTACATCGACAAGGACGGAGATACACTTGAATGGGGAAAGTTCCAGATTGACGGAAGAAGTGCTAGAGGAGGCTGCCAAACAACTAATGACACATATGCCAAGGCGTTGA
Protein Sequence MGSLISTCLYNSRANTTARITDSSIWSPHLGQHISIRTYRELNQAPTSSPTSTRTEIHLNGESSRLTEEVLEEAAKQLMTHMPRR

NCBI Accession YP_009428566.1
Location 370-1140
Gene Name BV1
Protein Name NSP
Coding Region ATGTATCCTTTGAGGAATAAACGTGGATCGTATTTTACTGCACGTCGATATTATCCACGTAATACATTTTCTAGGCGTCCATCTACTTCCAAGAAACAAGATGGGAAACGACGAGCTGTAAATACCAATAAGACGAATGACGAGCCGAAGATGTCAGCCCAACGCATACATGAGAATCAGTATGGGCCTGATTTTGTTATGGCCCATAATACTGCTATCTCGACCTTCATTAGTTACCCGGGCTTGGGTTCAACTTTACCCAACCGAAGCAGGTCCTATATTAAGTTGAAACAACTACGTTTCAAAGGGACCGTGAAGATTGAACGTGTTCAATCGGATCTGAACATGGATGGTTCTACCCCGAAGGTTGAAGGAGTCTTCTCCCTTGTTGTTGTTGTGGATCGTAAACCCCATGTTGGTCCTTCTGGCTGTCTACAATCATTTGACGAACTCTTTGGTGCAAGGATCCACAGCCATGGCAACCTCAACGTAACCTCTGCATTGAAAGATCGTTATTATATTCGACACGTTTGCAAACGTGTATTCTCAGTGGAGAAGGACACGTTGATGGTAGATGTGGAGGGATTCATTCCCCTCTCTAACAAGCGTTTCAATTGTTGGTCTACGTTCAAGGATCTTGATCGTGATTCATGCAAGGGTGTTTATGACAATATAAGCAAGAACGCCCTCTTAGTTTATTATTGTTGGATGTCGGATACGATGTCTACCGCATCTACCTTTGTATCGTTTGACCTTGATTATGTCGGTTGA
Protein Sequence MYPLRNKRGSYFTARRYYPRNTFSRRPSTSKKQDGKRRAVNTNKTNDEPKMSAQRIHENQYGPDFVMAHNTAISTFISYPGLGSTLPNRSRSYIKLKQLRFKGTVKIERVQSDLNMDGSTPKVEGVFSLVVVVDRKPHVGPSGCLQSFDELFGARIHSHGNLNVTSALKDRYYIRHVCKRVFSVEKDTLMVDVEGFIPLSNKRFNCWSTFKDLDRDSCKGVYDNISKNALLVYYCWMSDTMSTASTFVSFDLDYVG

NCBI Accession YP_009428567.1
Location 1200-2081
Gene Name BC1
Protein Name MP
Coding Region ATGGATTCTCAGTTAGTTAATCCTCCTAACGCATTCAACTACATAGAGTCTCACCGGGACGAGTACCAGCTTTCACATGACCTAACTGAGATAATCCTGCAATTTCCTTCGACGGCGTCTCAGTTGACAGCTAGGCTCAGTCGTAGCTGTATGAAGATAGACCACTGCGTCATAGAATACAGGCAACAAGTTCCGATCAACGCCACGGGGACGGTAATAGTGGAGATCCACGATAAAAGAATGACGGACAATGAGTCCTTACAGGCGTCCTGGACTTATCCGATCAGGTGCAACATAGATCTCCACTATTTCTCGGCTTCGTTCTTCTCACTCAAAGACCCAATTCCATGGAAATTGTACTATCGCGTTTGCGATACAAATGTTCATCAAAGGACCCACTTTGCCAAGTTCAAGGGCAAGCTGAAATTGTCTACGGCGAAACACTCGGTCGACATTCCATTCCGGGCACCGACAGTCAAGATCCTGTCCAAACAGTTCACCGACAAAGACGTGGACTTCTCCCATGTCGACTATGGGAAATGGGAGAGGAAGCCCATAAGATGCGCATCAATGTCAAGACTTGGGCTAAGAGGCCCAATCGAGATTAGGCCTGGCGAGTCGTGGGCTTCTAGAAGTACAATAGGTACAGGCGCGTCAGACGCGGACTCAGAGATGGAGAACGAACTCCATCCATATAGACATCTAAACAGGCTGGGAACCAGCGTTCTAGACCCAGGAGAGTCTGCTTCGATCGTGGGGGCCCAAAGAGCGGGTTCCAACATAACAATGTCGATGGGCCAGTTGAACGAGTTAGTTAGGACAACTGTCCAAGAATGTATTAATAGTAATTGTCAGGCTTCTCAAGCCAAATCATTAAAATAA
Protein Sequence MDSQLVNPPNAFNYIESHRDEYQLSHDLTEIILQFPSTASQLTARLSRSCMKIDHCVIEYRQQVPINATGTVIVEIHDKRMTDNESLQASWTYPIRCNIDLHYFSASFFSLKDPIPWKLYYRVCDTNVHQRTHFAKFKGKLKLSTAKHSVDIPFRAPTVKILSKQFTDKDVDFSHVDYGKWERKPIRCASMSRLGLRGPIEIRPGESWASRSTIGTGASDADSEMENELHPYRHLNRLGTSVLDPGESASIVGAQRAGSNITMSMGQLNELVRTTVQECINSNCQASQAKSLK