Tobacco curly shoot virus


Basic Information

Genus Begomovirus
NCBI Assembly GCF_000859325.1
Release date 2015/2/13
Submitter Li,Z.H., Zhou,X.P., Zhang,X., Xie,Y., Li,Z., Li,G., Zhang,Z., Zhou,X.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_003722
ACCGGATGGCCGCGATTTTTTTTAAAGTGGGCCCCTTGATGTGATATGTCATCCAATCAAAATGCTCCCCCAAAGCTTAATTGTTTTGTGGTCCCTTATTTAAACTTGCTCACCAAGTAGTGCACTCCGCACTATGTGGGATCCATTAGTAAACGAGTTTCCCGAAACCGTTCACGGCTTTAGGTGTATGTTAGCAGTTAAATATCTGCAGTTAGTAGAGAAGACTTATTCGCCTGACACATTAGGGCACGATTTAATTAGGGATTTAATTTCAGTTATTAGGGCTAGAAATTATGTCGAAGCGTCCAGCAGATATAATCATTTCCACGCCCGCTTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCCATATGTGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAAGCAAGAGCATGGGCGAACAGGCCCATGAACAGAAAACCCAGGATGTACAGGATGTACAGAAGTCCTGATGTCCCTAGAGGATGTGAAGGGCCATGTAAGGTCCAGTCTTTTGAGTCTAGACATGACATTCAGCATATAGGTAAAGTTATGTGTGTCAGTGATGTTACGCGTGGAACTGGGCTGACTCATCGAGTGGGTAAAAGGTTTTGTGTTAAATCCGTTTATGTCTTGGGTAAGATCTGGATGGATGAAAATATTAAGACCAAGAATCACACTAACAGTGTTATGTTTTTTTTAGTTAGGGATCGTAGGCCTGTGGATAAACCTCAAGATTTTGGAGAGGTTTTTAACATGTTTGATAATGAGCCCAGTACGGCTACTGTGAAGAATGTTCATCGTGATAGGTATCAAGTGCTTCGCAAATGGCATGCAACTGTTGCGGGTGGACAATATGCGTCGAAGGAACAAGCCTTTGTGAAGAAGTTTGTTAGGGTTAATAATTATGTTGTGTATAACCAGCAAGAAGCTGGCAAGTATGAAAATCATTCTGAGAATGCGTTAATGTTGTATATGGCATGTACTCATGCCTCTAACCCTGTGTATGCTACTTTGAAGATACGGATCTATTTCTATGATTCCGTAACAAATTAATAAATATTAAATTTTATTGAATAAGATTGGTCTACATATACAATGTGTTCTAATACATCCCATAATACATGATCAACTGCACGAATTACATTATTAATACTGATAATTCCTAAATTATTTAAATATTTAAAAACTTGAGTCTTAAAGACCCTTAAGAAACGACCAGTCTGAGGCTGTGAAGTCATCCAGATTCGGTAGACTAGATAACATTTGTGCACTCCCAGAGCTTTCCGCAGGTTGTAGTTGAACTGTATTTGGATGGTGATTATGTCTTCTTTCATGAGAAATGGACGGTTCTGGTGCTCTATTATCTTGAAATAAAGGGGATTTTGAATCTCCCAGATATACACGCCATTCTTTGCTTGAGCTGCAGTGATGAGTTCCCCTGTGCGTGAATCCATGATCGTGACAGGCTAGTGCTATGAAATATGAACATCCACAAGGGAGATCAACACGACGACGTCTGTTCCCCTTCTTGGCTAGCCTGTGCTTCACTTTGATTGGAACCTGAGTAGAGTGGGCTTTCGAGGGTGACGAAGATCGCATTCTTTAAAGCCCAATTTTTAAGAGCTGTATTTTTCTCTTCATCCAAGAATTCTTTATAGCTAGAGTTGGGTCCTGGATTGCAGAGAAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTCCCGTACTTGGTATTGCTTTGCCAGTCTCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGGTAGTGCGGATCTACGTCATCAATGACGTTATACCAAGCATCATTATTGTACACCTTAGGGCTTAGATCTAAATGACCACACAAGTAATTATGTGGTCCCAATGACCTGGCCCACATCGTCTTCCCTGTTCTACTGTCACCCTCTATGACTATACTCATGGGTCTCAATGGCCGCGCAGCGGCACTGACGACATTCTCGGCAGCCCATTCGTCAAGTTCTTCTGGAACTTGATCGAAAGAAGAAGATAAAAAAGGAGAAATGTATTCCTCTATCGGGGGAGTAAAAATCCTATCTAAATTAGAATTTAAATTATGAAACTGTAATACAAAATCTTTAGGGGCCTTTTCCCTTAGTATATTGAGGGCCGAAGCTTTGGACCCTGAATTGATTGCCTCGGCATATGCGTCGTTGGCAGATTGGCAACCTCCTCTAGCCGATCTTCCATCGATCTGGAAAATTCCATGATCAAGGACGTCTCCGTCTTTTTCCATGTATGTTTTAACATCTGTTGAGCTTTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGATCGGGTTGGGGATGTGAGATCGAAGAATCTTTGGTTTTTACACTGGAATTTTCCTTCGAATTGGATGAGGACATGCAGGTGAGGAGTCCCATCTTCATGGAGTTCCCTGCAGATTCTGATGAATAATTTATTAATTGGTGTTTCTAGGGCTTTAATTTGGGAAAGTGCCTCTTCTTTAGTGAGAGAACAATGTGGGTATGTGAGGAAATAGTTCTTGGCATTTATTCTGAATTTATTAGGAGGAGCCATTGACTGGTCAATCGGTGTCTCTCAAACTTGGCTATGCAATCGGTGTCTGGGGTCTTATTTATATGTGGACACCAAATGGCATAATTGTAATTTAGTAAATGTAATTCAAAATTCAAAATCCAAAAGCGGCCATCCGTATAATATT

Gene Information

NCBI Accession NP_620420.1
Location 134-481
Gene Name AV2
Protein Name AV2 protein
Coding Region ATGTGGGATCCATTAGTAAACGAGTTTCCCGAAACCGTTCACGGCTTTAGGTGTATGTTAGCAGTTAAATATCTGCAGTTAGTAGAGAAGACTTATTCGCCTGACACATTAGGGCACGATTTAATTAGGGATTTAATTTCAGTTATTAGGGCTAGAAATTATGTCGAAGCGTCCAGCAGATATAATCATTTCCACGCCCGCTTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCCATATGTGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAAGCAAGAGCATGGGCGAACAGGCCCATGAACAGAAAACCCAGGATGTACAGGATGTACAGAAGTCCTGA
Protein Sequence MWDPLVNEFPETVHGFRCMLAVKYLQLVEKTYSPDTLGHDLIRDLISVIRARNYVEASSRYNHFHARFEGTPPSQLRQPICEPCCCPHCPRHQSKSMGEQAHEQKTQDVQDVQKS

NCBI Accession NP_620421.1
Location 294-1064
Gene Name AV1
Protein Name coat protein
Coding Region ATGTCGAAGCGTCCAGCAGATATAATCATTTCCACGCCCGCTTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCCATATGTGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAAGCAAGAGCATGGGCGAACAGGCCCATGAACAGAAAACCCAGGATGTACAGGATGTACAGAAGTCCTGATGTCCCTAGAGGATGTGAAGGGCCATGTAAGGTCCAGTCTTTTGAGTCTAGACATGACATTCAGCATATAGGTAAAGTTATGTGTGTCAGTGATGTTACGCGTGGAACTGGGCTGACTCATCGAGTGGGTAAAAGGTTTTGTGTTAAATCCGTTTATGTCTTGGGTAAGATCTGGATGGATGAAAATATTAAGACCAAGAATCACACTAACAGTGTTATGTTTTTTTTAGTTAGGGATCGTAGGCCTGTGGATAAACCTCAAGATTTTGGAGAGGTTTTTAACATGTTTGATAATGAGCCCAGTACGGCTACTGTGAAGAATGTTCATCGTGATAGGTATCAAGTGCTTCGCAAATGGCATGCAACTGTTGCGGGTGGACAATATGCGTCGAAGGAACAAGCCTTTGTGAAGAAGTTTGTTAGGGTTAATAATTATGTTGTGTATAACCAGCAAGAAGCTGGCAAGTATGAAAATCATTCTGAGAATGCGTTAATGTTGTATATGGCATGTACTCATGCCTCTAACCCTGTGTATGCTACTTTGAAGATACGGATCTATTTCTATGATTCCGTAACAAATTAA
Protein Sequence MSKRPADIIISTPASKVRRRLNFDSPYVSRAAAPIVRVTKARAWANRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDIQHIGKVMCVSDVTRGTGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEPSTATVKNVHRDRYQVLRKWHATVAGGQYASKEQAFVKKFVRVNNYVVYNQQEAGKYENHSENALMLYMACTHASNPVYATLKIRIYFYDSVTN

NCBI Accession NP_620422.1
Location 1061-1465
Gene Name AC3
Protein Name AC3 protein
Coding Region ATGGATTCACGCACAGGGGAACTCATCACTGCAGCTCAAGCAAAGAATGGCGTGTATATCTGGGAGATTCAAAATCCCCTTTATTTCAAGATAATAGAGCACCAGAACCGTCCATTTCTCATGAAAGAAGACATAATCACCATCCAAATACAGTTCAACTACAACCTGCGGAAAGCTCTGGGAGTGCACAAATGTTATCTAGTCTACCGAATCTGGATGACTTCACAGCCTCAGACTGGTCGTTTCTTAAGGGTCTTTAAGACTCAAGTTTTTAAATATTTAAATAATTTAGGAATTATCAGTATTAATAATGTAATTCGTGCAGTTGATCATGTATTATGGGATGTATTAGAACACATTGTATATGTAGACCAATCTTATTCAATAAAATTTAATATTTATTAA
Protein Sequence MDSRTGELITAAQAKNGVYIWEIQNPLYFKIIEHQNRPFLMKEDIITIQIQFNYNLRKALGVHKCYLVYRIWMTSQPQTGRFLRVFKTQVFKYLNNLGIISINNVIRAVDHVLWDVLEHIVYVDQSYSIKFNIY

NCBI Accession NP_620423.1
Location 1206-1610
Gene Name AC2
Protein Name AC2 protein
Coding Region ATGCGATCTTCGTCACCCTCGAAAGCCCACTCTACTCAGGTTCCAATCAAAGTGAAGCACAGGCTAGCCAAGAAGGGGAACAGACGTCGTCGTGTTGATCTCCCTTGTGGATGTTCATATTTCATAGCACTAGCCTGTCACGATCATGGATTCACGCACAGGGGAACTCATCACTGCAGCTCAAGCAAAGAATGGCGTGTATATCTGGGAGATTCAAAATCCCCTTTATTTCAAGATAATAGAGCACCAGAACCGTCCATTTCTCATGAAAGAAGACATAATCACCATCCAAATACAGTTCAACTACAACCTGCGGAAAGCTCTGGGAGTGCACAAATGTTATCTAGTCTACCGAATCTGGATGACTTCACAGCCTCAGACTGGTCGTTTCTTAAGGGTCTTTAA
Protein Sequence MRSSSPSKAHSTQVPIKVKHRLAKKGNRRRRVDLPCGCSYFIALACHDHGFTHRGTHHCSSSKEWRVYLGDSKSPLFQDNRAPEPSISHERRHNHHPNTVQLQPAESSGSAQMLSSLPNLDDFTASDWSFLKGL

NCBI Accession NP_620424.1
Location 1513-2598
Gene Name AC1
Protein Name AC1 protein
Coding Region ATGGCTCCTCCTAATAAATTCAGAATAAATGCCAAGAACTATTTCCTCACATACCCACATTGTTCTCTCACTAAAGAAGAGGCACTTTCCCAAATTAAAGCCCTAGAAACACCAATTAATAAATTATTCATCAGAATCTGCAGGGAACTCCATGAAGATGGGACTCCTCACCTGCATGTCCTCATCCAATTCGAAGGAAAATTCCAGTGTAAAAACCAAAGATTCTTCGATCTCACATCCCCAACCCGATCAGCACATTTCCATCCGAACATTCAGGGAGCTAAAAGCTCAACAGATGTTAAAACATACATGGAAAAAGACGGAGACGTCCTTGATCATGGAATTTTCCAGATCGATGGAAGATCGGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAATTCAGGGTCCAAAGCTTCGGCCCTCAATATACTAAGGGAAAAGGCCCCTAAAGATTTTGTATTACAGTTTCATAATTTAAATTCTAATTTAGATAGGATTTTTACTCCCCCGATAGAGGAATACATTTCTCCTTTTTTATCTTCTTCTTTCGATCAAGTTCCAGAAGAACTTGACGAATGGGCTGCCGAGAATGTCGTCAGTGCCGCTGCGCGGCCATTGAGACCCATGAGTATAGTCATAGAGGGTGACAGTAGAACAGGGAAGACGATGTGGGCCAGGTCATTGGGACCACATAATTACTTGTGTGGTCATTTAGATCTAAGCCCTAAGGTGTACAATAATGATGCTTGGTATAACGTCATTGATGACGTAGATCCGCACTACCTAAAGCACTTTAAAGAATTCATGGGGGCCCAAAGAGACTGGCAAAGCAATACCAAGTACGGGAAGCCAGTTCAAATTAAAGGCGGAATTCCCACTATCTTTCTCTGCAATCCAGGACCCAACTCTAGCTATAAAGAATTCTTGGATGAAGAGAAAAATACAGCTCTTAAAAATTGGGCTTTAAAGAATGCGATCTTCGTCACCCTCGAAAGCCCACTCTACTCAGGTTCCAATCAAAGTGAAGCACAGGCTAGCCAAGAAGGGGAACAGACGTCGTCGTGTTGA
Protein Sequence MAPPNKFRINAKNYFLTYPHCSLTKEEALSQIKALETPINKLFIRICRELHEDGTPHLHVLIQFEGKFQCKNQRFFDLTSPTRSAHFHPNIQGAKSSTDVKTYMEKDGDVLDHGIFQIDGRSARGGCQSANDAYAEAINSGSKASALNILREKAPKDFVLQFHNLNSNLDRIFTPPIEEYISPFLSSSFDQVPEELDEWAAENVVSAAARPLRPMSIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYNNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNTALKNWALKNAIFVTLESPLYSGSNQSEAQASQEGEQTSSC

NCBI Accession NP_620425.1
Location 2148-2447
Gene Name AC4
Protein Name AC4 protein
Coding Region ATGAAGATGGGACTCCTCACCTGCATGTCCTCATCCAATTCGAAGGAAAATTCCAGTGTAAAAACCAAAGATTCTTCGATCTCACATCCCCAACCCGATCAGCACATTTCCATCCGAACATTCAGGGAGCTAAAAGCTCAACAGATGTTAAAACATACATGGAAAAAGACGGAGACGTCCTTGATCATGGAATTTTCCAGATCGATGGAAGATCGGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAATTCAGGGTCCAAAGCTTCGGCCCTCAATATACTAA
Protein Sequence MKMGLLTCMSSSNSKENSSVKTKDSSISHPQPDQHISIRTFRELKAQQMLKHTWKKTETSLIMEFSRSMEDRLEEVANLPTTHMPRQSIQGPKLRPSIY