Tobacco curly shoot virus
Basic Information
Genus |
Begomovirus
|
NCBI Assembly |
GCF_000859325.1 |
Release date |
2015/2/13 |
Submitter |
Li,Z.H., Zhou,X.P., Zhang,X., Xie,Y., Li,Z., Li,G., Zhang,Z., Zhou,X. |
Host |
|
Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGATTTTTTTTAAAGTGGGCCCCTTGATGTGATATGTCATCCAATCAAAATGCTCCCCCAAAGCTTAATTGTTTTGTGGTCCCTTATTTAAACTTGCTCACCAAGTAGTGCACTCCGCACTATGTGGGATCCATTAGTAAACGAGTTTCCCGAAACCGTTCACGGCTTTAGGTGTATGTTAGCAGTTAAATATCTGCAGTTAGTAGAGAAGACTTATTCGCCTGACACATTAGGGCACGATTTAATTAGGGATTTAATTTCAGTTATTAGGGCTAGAAATTATGTCGAAGCGTCCAGCAGATATAATCATTTCCACGCCCGCTTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCCATATGTGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAAGCAAGAGCATGGGCGAACAGGCCCATGAACAGAAAACCCAGGATGTACAGGATGTACAGAAGTCCTGATGTCCCTAGAGGATGTGAAGGGCCATGTAAGGTCCAGTCTTTTGAGTCTAGACATGACATTCAGCATATAGGTAAAGTTATGTGTGTCAGTGATGTTACGCGTGGAACTGGGCTGACTCATCGAGTGGGTAAAAGGTTTTGTGTTAAATCCGTTTATGTCTTGGGTAAGATCTGGATGGATGAAAATATTAAGACCAAGAATCACACTAACAGTGTTATGTTTTTTTTAGTTAGGGATCGTAGGCCTGTGGATAAACCTCAAGATTTTGGAGAGGTTTTTAACATGTTTGATAATGAGCCCAGTACGGCTACTGTGAAGAATGTTCATCGTGATAGGTATCAAGTGCTTCGCAAATGGCATGCAACTGTTGCGGGTGGACAATATGCGTCGAAGGAACAAGCCTTTGTGAAGAAGTTTGTTAGGGTTAATAATTATGTTGTGTATAACCAGCAAGAAGCTGGCAAGTATGAAAATCATTCTGAGAATGCGTTAATGTTGTATATGGCATGTACTCATGCCTCTAACCCTGTGTATGCTACTTTGAAGATACGGATCTATTTCTATGATTCCGTAACAAATTAATAAATATTAAATTTTATTGAATAAGATTGGTCTACATATACAATGTGTTCTAATACATCCCATAATACATGATCAACTGCACGAATTACATTATTAATACTGATAATTCCTAAATTATTTAAATATTTAAAAACTTGAGTCTTAAAGACCCTTAAGAAACGACCAGTCTGAGGCTGTGAAGTCATCCAGATTCGGTAGACTAGATAACATTTGTGCACTCCCAGAGCTTTCCGCAGGTTGTAGTTGAACTGTATTTGGATGGTGATTATGTCTTCTTTCATGAGAAATGGACGGTTCTGGTGCTCTATTATCTTGAAATAAAGGGGATTTTGAATCTCCCAGATATACACGCCATTCTTTGCTTGAGCTGCAGTGATGAGTTCCCCTGTGCGTGAATCCATGATCGTGACAGGCTAGTGCTATGAAATATGAACATCCACAAGGGAGATCAACACGACGACGTCTGTTCCCCTTCTTGGCTAGCCTGTGCTTCACTTTGATTGGAACCTGAGTAGAGTGGGCTTTCGAGGGTGACGAAGATCGCATTCTTTAAAGCCCAATTTTTAAGAGCTGTATTTTTCTCTTCATCCAAGAATTCTTTATAGCTAGAGTTGGGTCCTGGATTGCAGAGAAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTCCCGTACTTGGTATTGCTTTGCCAGTCTCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGGTAGTGCGGATCTACGTCATCAATGACGTTATACCAAGCATCATTATTGTACACCTTAGGGCTTAGATCTAAATGACCACACAAGTAATTATGTGGTCCCAATGACCTGGCCCACATCGTCTTCCCTGTTCTACTGTCACCCTCTATGACTATACTCATGGGTCTCAATGGCCGCGCAGCGGCACTGACGACATTCTCGGCAGCCCATTCGTCAAGTTCTTCTGGAACTTGATCGAAAGAAGAAGATAAAAAAGGAGAAATGTATTCCTCTATCGGGGGAGTAAAAATCCTATCTAAATTAGAATTTAAATTATGAAACTGTAATACAAAATCTTTAGGGGCCTTTTCCCTTAGTATATTGAGGGCCGAAGCTTTGGACCCTGAATTGATTGCCTCGGCATATGCGTCGTTGGCAGATTGGCAACCTCCTCTAGCCGATCTTCCATCGATCTGGAAAATTCCATGATCAAGGACGTCTCCGTCTTTTTCCATGTATGTTTTAACATCTGTTGAGCTTTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGATCGGGTTGGGGATGTGAGATCGAAGAATCTTTGGTTTTTACACTGGAATTTTCCTTCGAATTGGATGAGGACATGCAGGTGAGGAGTCCCATCTTCATGGAGTTCCCTGCAGATTCTGATGAATAATTTATTAATTGGTGTTTCTAGGGCTTTAATTTGGGAAAGTGCCTCTTCTTTAGTGAGAGAACAATGTGGGTATGTGAGGAAATAGTTCTTGGCATTTATTCTGAATTTATTAGGAGGAGCCATTGACTGGTCAATCGGTGTCTCTCAAACTTGGCTATGCAATCGGTGTCTGGGGTCTTATTTATATGTGGACACCAAATGGCATAATTGTAATTTAGTAAATGTAATTCAAAATTCAAAATCCAAAAGCGGCCATCCGTATAATATT
Gene Information
NCBI Accession
|
NP_620420.1
|
Location
|
134-481 |
Gene Name
|
AV2 |
Protein Name
|
AV2 protein |
Coding Region
|
ATGTGGGATCCATTAGTAAACGAGTTTCCCGAAACCGTTCACGGCTTTAGGTGTATGTTAGCAGTTAAATATCTGCAGTTAGTAGAGAAGACTTATTCGCCTGACACATTAGGGCACGATTTAATTAGGGATTTAATTTCAGTTATTAGGGCTAGAAATTATGTCGAAGCGTCCAGCAGATATAATCATTTCCACGCCCGCTTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCCATATGTGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAAGCAAGAGCATGGGCGAACAGGCCCATGAACAGAAAACCCAGGATGTACAGGATGTACAGAAGTCCTGA |
Protein Sequence
|
MWDPLVNEFPETVHGFRCMLAVKYLQLVEKTYSPDTLGHDLIRDLISVIRARNYVEASSRYNHFHARFEGTPPSQLRQPICEPCCCPHCPRHQSKSMGEQAHEQKTQDVQDVQKS |
NCBI Accession
|
NP_620421.1
|
Location
|
294-1064 |
Gene Name
|
AV1 |
Protein Name
|
coat protein |
Coding Region
|
ATGTCGAAGCGTCCAGCAGATATAATCATTTCCACGCCCGCTTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCCATATGTGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAAGCAAGAGCATGGGCGAACAGGCCCATGAACAGAAAACCCAGGATGTACAGGATGTACAGAAGTCCTGATGTCCCTAGAGGATGTGAAGGGCCATGTAAGGTCCAGTCTTTTGAGTCTAGACATGACATTCAGCATATAGGTAAAGTTATGTGTGTCAGTGATGTTACGCGTGGAACTGGGCTGACTCATCGAGTGGGTAAAAGGTTTTGTGTTAAATCCGTTTATGTCTTGGGTAAGATCTGGATGGATGAAAATATTAAGACCAAGAATCACACTAACAGTGTTATGTTTTTTTTAGTTAGGGATCGTAGGCCTGTGGATAAACCTCAAGATTTTGGAGAGGTTTTTAACATGTTTGATAATGAGCCCAGTACGGCTACTGTGAAGAATGTTCATCGTGATAGGTATCAAGTGCTTCGCAAATGGCATGCAACTGTTGCGGGTGGACAATATGCGTCGAAGGAACAAGCCTTTGTGAAGAAGTTTGTTAGGGTTAATAATTATGTTGTGTATAACCAGCAAGAAGCTGGCAAGTATGAAAATCATTCTGAGAATGCGTTAATGTTGTATATGGCATGTACTCATGCCTCTAACCCTGTGTATGCTACTTTGAAGATACGGATCTATTTCTATGATTCCGTAACAAATTAA |
Protein Sequence
|
MSKRPADIIISTPASKVRRRLNFDSPYVSRAAAPIVRVTKARAWANRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDIQHIGKVMCVSDVTRGTGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEPSTATVKNVHRDRYQVLRKWHATVAGGQYASKEQAFVKKFVRVNNYVVYNQQEAGKYENHSENALMLYMACTHASNPVYATLKIRIYFYDSVTN |
NCBI Accession
|
NP_620422.1
|
Location
|
1061-1465 |
Gene Name
|
AC3 |
Protein Name
|
AC3 protein |
Coding Region
|
ATGGATTCACGCACAGGGGAACTCATCACTGCAGCTCAAGCAAAGAATGGCGTGTATATCTGGGAGATTCAAAATCCCCTTTATTTCAAGATAATAGAGCACCAGAACCGTCCATTTCTCATGAAAGAAGACATAATCACCATCCAAATACAGTTCAACTACAACCTGCGGAAAGCTCTGGGAGTGCACAAATGTTATCTAGTCTACCGAATCTGGATGACTTCACAGCCTCAGACTGGTCGTTTCTTAAGGGTCTTTAAGACTCAAGTTTTTAAATATTTAAATAATTTAGGAATTATCAGTATTAATAATGTAATTCGTGCAGTTGATCATGTATTATGGGATGTATTAGAACACATTGTATATGTAGACCAATCTTATTCAATAAAATTTAATATTTATTAA |
Protein Sequence
|
MDSRTGELITAAQAKNGVYIWEIQNPLYFKIIEHQNRPFLMKEDIITIQIQFNYNLRKALGVHKCYLVYRIWMTSQPQTGRFLRVFKTQVFKYLNNLGIISINNVIRAVDHVLWDVLEHIVYVDQSYSIKFNIY |
NCBI Accession
|
NP_620423.1
|
Location
|
1206-1610 |
Gene Name
|
AC2 |
Protein Name
|
AC2 protein |
Coding Region
|
ATGCGATCTTCGTCACCCTCGAAAGCCCACTCTACTCAGGTTCCAATCAAAGTGAAGCACAGGCTAGCCAAGAAGGGGAACAGACGTCGTCGTGTTGATCTCCCTTGTGGATGTTCATATTTCATAGCACTAGCCTGTCACGATCATGGATTCACGCACAGGGGAACTCATCACTGCAGCTCAAGCAAAGAATGGCGTGTATATCTGGGAGATTCAAAATCCCCTTTATTTCAAGATAATAGAGCACCAGAACCGTCCATTTCTCATGAAAGAAGACATAATCACCATCCAAATACAGTTCAACTACAACCTGCGGAAAGCTCTGGGAGTGCACAAATGTTATCTAGTCTACCGAATCTGGATGACTTCACAGCCTCAGACTGGTCGTTTCTTAAGGGTCTTTAA |
Protein Sequence
|
MRSSSPSKAHSTQVPIKVKHRLAKKGNRRRRVDLPCGCSYFIALACHDHGFTHRGTHHCSSSKEWRVYLGDSKSPLFQDNRAPEPSISHERRHNHHPNTVQLQPAESSGSAQMLSSLPNLDDFTASDWSFLKGL |
NCBI Accession
|
NP_620424.1
|
Location
|
1513-2598 |
Gene Name
|
AC1 |
Protein Name
|
AC1 protein |
Coding Region
|
ATGGCTCCTCCTAATAAATTCAGAATAAATGCCAAGAACTATTTCCTCACATACCCACATTGTTCTCTCACTAAAGAAGAGGCACTTTCCCAAATTAAAGCCCTAGAAACACCAATTAATAAATTATTCATCAGAATCTGCAGGGAACTCCATGAAGATGGGACTCCTCACCTGCATGTCCTCATCCAATTCGAAGGAAAATTCCAGTGTAAAAACCAAAGATTCTTCGATCTCACATCCCCAACCCGATCAGCACATTTCCATCCGAACATTCAGGGAGCTAAAAGCTCAACAGATGTTAAAACATACATGGAAAAAGACGGAGACGTCCTTGATCATGGAATTTTCCAGATCGATGGAAGATCGGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAATTCAGGGTCCAAAGCTTCGGCCCTCAATATACTAAGGGAAAAGGCCCCTAAAGATTTTGTATTACAGTTTCATAATTTAAATTCTAATTTAGATAGGATTTTTACTCCCCCGATAGAGGAATACATTTCTCCTTTTTTATCTTCTTCTTTCGATCAAGTTCCAGAAGAACTTGACGAATGGGCTGCCGAGAATGTCGTCAGTGCCGCTGCGCGGCCATTGAGACCCATGAGTATAGTCATAGAGGGTGACAGTAGAACAGGGAAGACGATGTGGGCCAGGTCATTGGGACCACATAATTACTTGTGTGGTCATTTAGATCTAAGCCCTAAGGTGTACAATAATGATGCTTGGTATAACGTCATTGATGACGTAGATCCGCACTACCTAAAGCACTTTAAAGAATTCATGGGGGCCCAAAGAGACTGGCAAAGCAATACCAAGTACGGGAAGCCAGTTCAAATTAAAGGCGGAATTCCCACTATCTTTCTCTGCAATCCAGGACCCAACTCTAGCTATAAAGAATTCTTGGATGAAGAGAAAAATACAGCTCTTAAAAATTGGGCTTTAAAGAATGCGATCTTCGTCACCCTCGAAAGCCCACTCTACTCAGGTTCCAATCAAAGTGAAGCACAGGCTAGCCAAGAAGGGGAACAGACGTCGTCGTGTTGA |
Protein Sequence
|
MAPPNKFRINAKNYFLTYPHCSLTKEEALSQIKALETPINKLFIRICRELHEDGTPHLHVLIQFEGKFQCKNQRFFDLTSPTRSAHFHPNIQGAKSSTDVKTYMEKDGDVLDHGIFQIDGRSARGGCQSANDAYAEAINSGSKASALNILREKAPKDFVLQFHNLNSNLDRIFTPPIEEYISPFLSSSFDQVPEELDEWAAENVVSAAARPLRPMSIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYNNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNTALKNWALKNAIFVTLESPLYSGSNQSEAQASQEGEQTSSC |
NCBI Accession
|
NP_620425.1
|
Location
|
2148-2447 |
Gene Name
|
AC4 |
Protein Name
|
AC4 protein |
Coding Region
|
ATGAAGATGGGACTCCTCACCTGCATGTCCTCATCCAATTCGAAGGAAAATTCCAGTGTAAAAACCAAAGATTCTTCGATCTCACATCCCCAACCCGATCAGCACATTTCCATCCGAACATTCAGGGAGCTAAAAGCTCAACAGATGTTAAAACATACATGGAAAAAGACGGAGACGTCCTTGATCATGGAATTTTCCAGATCGATGGAAGATCGGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAATTCAGGGTCCAAAGCTTCGGCCCTCAATATACTAA |
Protein Sequence
|
MKMGLLTCMSSSNSKENSSVKTKDSSISHPQPDQHISIRTFRELKAQQMLKHTWKKTETSLIMEFSRSMEDRLEEVANLPTTHMPRQSIQGPKLRPSIY |