Synedrella yellow vein clearing virus


Basic Information

Genus Begomovirus
NCBI Assembly GCF_003029435.1
Isolate India
Release date 2018/8/26
Submitter Das,S., Shivaprasad,P.
Host
Vector
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_038994
ACCGGATGGCCGCGATTTTTTTTTAAGTGGTCCCCAGACCACGTGGTCCAATAATAGACGCTCCTCAAAGCTTAATTAATGGTTTGTGGGCCTATAACTTGCCCACCAAGTAGTGGGATTTTGTCATAATGTGGGATCCACTTTTAAACGAGTTTCCGGATACGGTGCACGGTTTTCGGTGTATGCTTGCTGTGAAATACTTACAGCTCGTAGAGAATACGTATTCACCGGATTCATTGGGTTACGATTTAATTCGGGATTTGATATCTGTAGTTCGTGCTCGTAACTATGTCGAAGCGACCAGCAGATATAATCATTTCCACTCCCGCATCGAAGGTGCGACGCCGTCTGAACTTCGAAACCCCCTACACGAGCCGTGTTGCTGTCCCCACTGTCCGCGTCACAAAATCAAGAGCATGGGCCAATCGGCCCATGAATCGGAAACCCAGGATGTACAGAATGTACAGAAGCCCTGATGTTCCTAGAGGATGCGAAGGCCCATGTAAGGTGCAATCATTTGAGTCTAGGCACGATGTAGTCCATATAGGGAAGGTCATGTGTATTAGTGATGTCACTCGTGGAACTGGGTTGACCCATAGAGTTGGTAAGCGTTTTTGTGTTAAGTCGGTTTACGTTTTGGGTAAGATATGGATGGATGAGAACATCAAGACCAAGAATCACACGAACAGTGTCATGTTTTTTCTTGTTCGTGATCGAAGACCTGTTGATAAGCCTCAAGATTTTGGAGAGGTGTTCAATATGTTTGATAATGAGCCTAGCACTGCTACTGTTAAGAATATGCACAGAGATCGTTATCAGGTGTTGAGAAAGTGGCACGCAACTGTCACTGGTGGTCAGTATGCATCCAAGGAGCAGGCGTTAGTTAAAAAATTTGTTAAAGTTAATAATTATGTTGTGTATAACCAGCAAGAGGCTGGGAAGTATGAGAATCATTCTGAAAATGCATTAATGTTGTATATGGCGTGCACGCACGCCTCTAATCCTGTGTATGCTACGTTGAAGATACGGATCTATTTTTATGATTCGGTCACAAATTAATAAATATTGAATTTTATTGATGATAATTGTTCTACGTATACAATGTGTTGCAATAGATTCCATAATACATGATCCACTGCTCTAATTACATTGTTAATACTAATAACTCCCACATTATTTAAGTACTTGAGTACTTGTGTCCTAAATACTCTTAAGAAACGACCAGTCTGAGGCTGTGAAGTCATCCAGATCCGGAAGGTCAGAAAGCATTTGTGAATTCCCAACGCTTTCCTCAGGTTGTAATTGAACTGGATTTGGATTTTCATGATATCTTGTTTCATTGTAAATGGGCGGTTGTGGTGCTCCGTTATCTTGAAATAAAGGGGATTTTGTATCTCCCAGATATACACGCCATTCTCTGCTTGAGCTGCAGTGATGTACTCCCCTGTGCGAGAATCCATGGTTATGACAGGCTAGGGCTATGAAGTATGAGCAGCCGCACGGTAGATCAACTCTCCGTCGTCTGTTGCTCTTCTTCGCTATCCTGTGTTGGACTTTGATGGGTACCTGAGTAGAGTGGCTCTTCGAGGGTGACGAAGGTCGCATTCTTCAGAGCCCAGTTTTTAAGCGCATTGTTTTTCTCTTCATCCAGATACTCTTTATAACTTGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACAGGTTTCCCGTACTTGGTGTTGCTTTGCCAGTCTCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGATAGTGCGGATCGACGTCATCAATGACGTTATACCACGCATTATTACTGTACACTTTCGGACTCAGATCGAGATGACCACACAAGTAGTTATGTGGTCCTAGTGACCTAGCCCACATGGTTTTTCCGGTACGACTATCACCCTCAATTACAATACTTATGGGCCTGATAGGCCGCGCAGCGGCACTGACAACGTTTTCACATGCCCACTCTTCAAGTTCTTCTGGAACTTGGTCAAAAGAAGAAGATAAAAAAGGAGAAACATAAACCTCCATTGGAGGTGTAAAAATCCTATCTAAATTAGAATTTAAATTGTGAAATTGTAAAACATAATCTTTGGGAGCTTTCTCCCTTAATATATTGAGGGCCTCAATTTTGGACCCTGAATTGATTGCCTCGGCATATGCGTCATTGGCAGATTGGCAACCTCCTCTAGCTGATCTTCCATCGACTTGGAAAACTCCATGATCAAGGATGTCTCCGTCTTTTTCCATATAGGTTTTGACGTCTGACGAACTTTTAGCTCCCTGAATGTTCGGATGGAAATGTGTTGACCGGCTTGGGGATGTGAGGTCGAAGAATCTGTTGTTTTGGCACTTGTATTTTCCTTCGAATTGGATGAGAACATGCAGGTGAGGAGTCCCATCTTCGTGAAGCTCTCTGCAGATTCTAATGAATTTTTTATTAGTTGGGGTTTGTAGGTTTAGGAATTGGGAAAGTGCCTCTTCTTTTGTAAGTGTGCACTTTGGATAAGTAAGAAAATAATTTTTGGCATTTATTTGAAAACGTTTGGGTTGAGGCATGTTGACTTGGTCAATCGGTACTCAACAAACTTGTCTATGCAATTGGGGAATGGTACTCAATATATAGGTGAGTACCAAATGGCATTATTGTAATTTGGTAAAGTGTGTTTTGAAATTCAAAACCCTCACGCTCCAAAAGCGGCCATCCGTATAATATT

Gene Information

NCBI Accession YP_009508435.1
Location 129-476
Gene Name AV2
Protein Name pre-coat protein
Coding Region ATGTGGGATCCACTTTTAAACGAGTTTCCGGATACGGTGCACGGTTTTCGGTGTATGCTTGCTGTGAAATACTTACAGCTCGTAGAGAATACGTATTCACCGGATTCATTGGGTTACGATTTAATTCGGGATTTGATATCTGTAGTTCGTGCTCGTAACTATGTCGAAGCGACCAGCAGATATAATCATTTCCACTCCCGCATCGAAGGTGCGACGCCGTCTGAACTTCGAAACCCCCTACACGAGCCGTGTTGCTGTCCCCACTGTCCGCGTCACAAAATCAAGAGCATGGGCCAATCGGCCCATGAATCGGAAACCCAGGATGTACAGAATGTACAGAAGCCCTGA
Protein Sequence MWDPLLNEFPDTVHGFRCMLAVKYLQLVENTYSPDSLGYDLIRDLISVVRARNYVEATSRYNHFHSRIEGATPSELRNPLHEPCCCPHCPRHKIKSMGQSAHESETQDVQNVQKP

NCBI Accession YP_009508436.1
Location 289-1059
Gene Name AV1
Protein Name coat protein
Coding Region ATGTCGAAGCGACCAGCAGATATAATCATTTCCACTCCCGCATCGAAGGTGCGACGCCGTCTGAACTTCGAAACCCCCTACACGAGCCGTGTTGCTGTCCCCACTGTCCGCGTCACAAAATCAAGAGCATGGGCCAATCGGCCCATGAATCGGAAACCCAGGATGTACAGAATGTACAGAAGCCCTGATGTTCCTAGAGGATGCGAAGGCCCATGTAAGGTGCAATCATTTGAGTCTAGGCACGATGTAGTCCATATAGGGAAGGTCATGTGTATTAGTGATGTCACTCGTGGAACTGGGTTGACCCATAGAGTTGGTAAGCGTTTTTGTGTTAAGTCGGTTTACGTTTTGGGTAAGATATGGATGGATGAGAACATCAAGACCAAGAATCACACGAACAGTGTCATGTTTTTTCTTGTTCGTGATCGAAGACCTGTTGATAAGCCTCAAGATTTTGGAGAGGTGTTCAATATGTTTGATAATGAGCCTAGCACTGCTACTGTTAAGAATATGCACAGAGATCGTTATCAGGTGTTGAGAAAGTGGCACGCAACTGTCACTGGTGGTCAGTATGCATCCAAGGAGCAGGCGTTAGTTAAAAAATTTGTTAAAGTTAATAATTATGTTGTGTATAACCAGCAAGAGGCTGGGAAGTATGAGAATCATTCTGAAAATGCATTAATGTTGTATATGGCGTGCACGCACGCCTCTAATCCTGTGTATGCTACGTTGAAGATACGGATCTATTTTTATGATTCGGTCACAAATTAA
Protein Sequence MSKRPADIIISTPASKVRRRLNFETPYTSRVAVPTVRVTKSRAWANRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGTGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEPSTATVKNMHRDRYQVLRKWHATVTGGQYASKEQALVKKFVKVNNYVVYNQQEAGKYENHSENALMLYMACTHASNPVYATLKIRIYFYDSVTN

NCBI Accession YP_009508437.1
Location 1056-1460
Gene Name AC3
Protein Name replication enhancer protein
Coding Region ATGGATTCTCGCACAGGGGAGTACATCACTGCAGCTCAAGCAGAGAATGGCGTGTATATCTGGGAGATACAAAATCCCCTTTATTTCAAGATAACGGAGCACCACAACCGCCCATTTACAATGAAACAAGATATCATGAAAATCCAAATCCAGTTCAATTACAACCTGAGGAAAGCGTTGGGAATTCACAAATGCTTTCTGACCTTCCGGATCTGGATGACTTCACAGCCTCAGACTGGTCGTTTCTTAAGAGTATTTAGGACACAAGTACTCAAGTACTTAAATAATGTGGGAGTTATTAGTATTAACAATGTAATTAGAGCAGTGGATCATGTATTATGGAATCTATTGCAACACATTGTATACGTAGAACAATTATCATCAATAAAATTCAATATTTATTAA
Protein Sequence MDSRTGEYITAAQAENGVYIWEIQNPLYFKITEHHNRPFTMKQDIMKIQIQFNYNLRKALGIHKCFLTFRIWMTSQPQTGRFLRVFRTQVLKYLNNVGVISINNVIRAVDHVLWNLLQHIVYVEQLSSIKFNIY

NCBI Accession YP_009508438.1
Location 1201-1605
Gene Name AC2
Protein Name transcriptional activator protein
Coding Region ATGCGACCTTCGTCACCCTCGAAGAGCCACTCTACTCAGGTACCCATCAAAGTCCAACACAGGATAGCGAAGAAGAGCAACAGACGACGGAGAGTTGATCTACCGTGCGGCTGCTCATACTTCATAGCCCTAGCCTGTCATAACCATGGATTCTCGCACAGGGGAGTACATCACTGCAGCTCAAGCAGAGAATGGCGTGTATATCTGGGAGATACAAAATCCCCTTTATTTCAAGATAACGGAGCACCACAACCGCCCATTTACAATGAAACAAGATATCATGAAAATCCAAATCCAGTTCAATTACAACCTGAGGAAAGCGTTGGGAATTCACAAATGCTTTCTGACCTTCCGGATCTGGATGACTTCACAGCCTCAGACTGGTCGTTTCTTAAGAGTATTTAG
Protein Sequence MRPSSPSKSHSTQVPIKVQHRIAKKSNRRRRVDLPCGCSYFIALACHNHGFSHRGVHHCSSSREWRVYLGDTKSPLFQDNGAPQPPIYNETRYHENPNPVQLQPEESVGNSQMLSDLPDLDDFTASDWSFLKSI

NCBI Accession YP_009508439.1
Location 1508-2593
Gene Name AC1
Protein Name replication associated protein
Coding Region ATGCCTCAACCCAAACGTTTTCAAATAAATGCCAAAAATTATTTTCTTACTTATCCAAAGTGCACACTTACAAAAGAAGAGGCACTTTCCCAATTCCTAAACCTACAAACCCCAACTAATAAAAAATTCATTAGAATCTGCAGAGAGCTTCACGAAGATGGGACTCCTCACCTGCATGTTCTCATCCAATTCGAAGGAAAATACAAGTGCCAAAACAACAGATTCTTCGACCTCACATCCCCAAGCCGGTCAACACATTTCCATCCGAACATTCAGGGAGCTAAAAGTTCGTCAGACGTCAAAACCTATATGGAAAAAGACGGAGACATCCTTGATCATGGAGTTTTCCAAGTCGATGGAAGATCAGCTAGAGGAGGTTGCCAATCTGCCAATGACGCATATGCCGAGGCAATCAATTCAGGGTCCAAAATTGAGGCCCTCAATATATTAAGGGAGAAAGCTCCCAAAGATTATGTTTTACAATTTCACAATTTAAATTCTAATTTAGATAGGATTTTTACACCTCCAATGGAGGTTTATGTTTCTCCTTTTTTATCTTCTTCTTTTGACCAAGTTCCAGAAGAACTTGAAGAGTGGGCATGTGAAAACGTTGTCAGTGCCGCTGCGCGGCCTATCAGGCCCATAAGTATTGTAATTGAGGGTGATAGTCGTACCGGAAAAACCATGTGGGCTAGGTCACTAGGACCACATAACTACTTGTGTGGTCATCTCGATCTGAGTCCGAAAGTGTACAGTAATAATGCGTGGTATAACGTCATTGATGACGTCGATCCGCACTATCTAAAGCACTTTAAAGAATTCATGGGGGCCCAAAGAGACTGGCAAAGCAACACCAAGTACGGGAAACCTGTTCAAATTAAAGGCGGAATTCCCACTATCTTCCTCTGCAATCCAGGACCCAATTCAAGTTATAAAGAGTATCTGGATGAAGAGAAAAACAATGCGCTTAAAAACTGGGCTCTGAAGAATGCGACCTTCGTCACCCTCGAAGAGCCACTCTACTCAGGTACCCATCAAAGTCCAACACAGGATAGCGAAGAAGAGCAACAGACGACGGAGAGTTGA
Protein Sequence MPQPKRFQINAKNYFLTYPKCTLTKEEALSQFLNLQTPTNKKFIRICRELHEDGTPHLHVLIQFEGKYKCQNNRFFDLTSPSRSTHFHPNIQGAKSSSDVKTYMEKDGDILDHGVFQVDGRSARGGCQSANDAYAEAINSGSKIEALNILREKAPKDYVLQFHNLNSNLDRIFTPPMEVYVSPFLSSSFDQVPEELEEWACENVVSAAARPIRPISIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNNAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEYLDEEKNNALKNWALKNATFVTLEEPLYSGTHQSPTQDSEEEQQTTES

NCBI Accession YP_009508440.1
Location 2143-2436
Gene Name AC4
Protein Name AC4
Coding Region ATGGGACTCCTCACCTGCATGTTCTCATCCAATTCGAAGGAAAATACAAGTGCCAAAACAACAGATTCTTCGACCTCACATCCCCAAGCCGGTCAACACATTTCCATCCGAACATTCAGGGAGCTAAAAGTTCGTCAGACGTCAAAACCTATATGGAAAAAGACGGAGACATCCTTGATCATGGAGTTTTCCAAGTCGATGGAAGATCAGCTAGAGGAGGTTGCCAATCTGCCAATGACGCATATGCCGAGGCAATCAATTCAGGGTCCAAAATTGAGGCCCTCAATATATTAA
Protein Sequence MGLLTCMFSSNSKENTSAKTTDSSTSHPQAGQHISIRTFRELKVRQTSKPIWKKTETSLIMEFSKSMEDQLEEVANLPMTHMPRQSIQGPKLRPSIY