Sweet potato leaf curl South Carolina virus


Basic Information

Genus Begomovirus
NCBI Assembly GCF_000893435.1
Isolate USA
Release date 2015/2/22
Submitter Zhang,S.C., Ling,K.S., Zhang,S., Ling,K.-S.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_015317
ACCGGTGCCCGCGCGACTTTTATTGTGGGACCCACGCGCTTTGCTTTAATTATTTAAAGGCGTTCTTGGTGCAGACTTTGTCGCCAAGAATGGATATGTGGGACCCACTTCAGAACCCACTCCCAGATACTTTATACGGTTTCCGTTGTATGCTTTCTGTAAAATACCTGCAAGGTATTTTGAAGAAATACGAACCAGGAACCCTAGGGTTCGAACTTTGTTCCGAACTCATCCGCATACTGCGTGTCAAGCAATATGGTAGGGCGAATTCCCGTTTCGCGGAGATTTCATCCCTATGGGGGGAGACCGGTAAGACGGAGGCTGAACTTCGAGACAGCTATCGTGCCCTACACTGGGAATGCTGTCCCAATTGCTGCCCGAAGCTATGTCCCGGTTTCTCGAAGCGTCCAGATGAAGAGAAGGAAGGGTGATCGCATCCCGAAGGGATGTGTTGGTCCCTGTAAGGTACAGGACTATGAGTTCAAGATGGATGTCCCACATAGTGGGACCTTTGTTTGTGTTTCTGATTTTACTAGAGGTACTGGGCTTACCCATCGTTTGGGTAAGAGGGTGTGTATTAAGTCCATGGGTATTGACGGTAAGGTCTGGATGGACGACAACGTCGCCAAGAGGGACCATACCAACATTATTACTTACTGGTTGGTCCGAGATCGGAGGCCCAATAAGGATCCTTTGACATTTGTACAGGCGTTTGCAATGTGTGATAACGAGCCCACTACTGCTAAGATCCGTATGGATCTGAGAGATAGAATGCAGGTGTTGAAGAAGTTCTCTGTTACAGTTTCAGGAGGCCCTTATAACCACAAAGAGCAGGCTTTGATTAGGAAGTTTTTTAAGGGATTGTATAATCATGTTACTTATAATCATAAGGAGGAGGCCAAATATGAGAATCATTTAGAAAATGCGTTAATGTTGTATTCTGCTAGCAGTCATGCTAGTAATCCTGTGTATCAGACCCTGCGTTGCAGGGCTTATTTTTATGATTCGCACAACAATTAATAAAGAAGTATTTTTATATCATCTTTACAATCTATTACATCGACTTCTTCAATCCATCTAACTGATTCAGGCAGATGCCTGATTACATAAACTAAATTGATAAGAGAAAAAAAACCTAAACTAGCTAAGCTATTACATATATGCCATTTAAGGCGTTGCAAAATACCAGTCCAACTGGGAATAACACCAGTCAGCTGGGTTGTTACTATTCGGAATTGGAGGAAGATCTTCTGGAATCCAATTTCCCTCCTGTTCCTGTGGTTGACTTGAAGCTGCAACTTGATGACCTTCTTTGTGTTGATGTTGTTGGTATGGACATATATCAGTCGTAGATGGAATGGAGCAGTCTGACCCACAGACATGGGATTGTTGAAGAATTCTGCTGCTCTCGTAATCTGTGCATGACTTAGTGACTCCCCGGTGCGTGAATCCATGTTGGAACTTGCAGGCGTTGGTGATGAAGGCTGAACAACCACAGCCCTTCCACACTATCCTTGTCCTTTGCTCAGGAGCCTTCCTCTTGGCCTTCTTCGCCGCTGTGTGCAGAGGTTCCTGAATGGGACACTTCCTCTTGTATCCAGAAGGGAGATTGGACATCGCAGAATATAGCGTTTGCTGTTGCCCAATTCTTGAGTGCTCCTTGCTCTGGTTTGTCTAGCCAGAGTTTAAATGAGGAACCCTCTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTTCCGTATTTACAGTTGGATTGCCAGTCCTTCTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGGTATTGGGGGTTGACGTCATCAATGATGTTATACCAAGCACTGTTGCTATACACTTTTGGACTCAGATCTAAATGACCACACAGATAATTATGTGGACCTAAAGACCTAGCCCAAACTGTTTTACCTATCCTACTTGGGCCTTCTATTACAATACTTATGGGCCTATCTGGCCGCGCAGCGGAATCCATGACATTTTCAGCAGCCCAATCGCTGATAATGTCAGGAACATTATTGAAAGAAGAAGATAAAAAAGGTGAAGAATATACAGAAGGAGGAGGAGAAAAAATCCTATCTAAATTACCACATAAATTGTGGTATTGAAAAATAAATTTCTCAGGGAGTTTTTCCCTGATAATTTGTAAGGCAGCTTCTTTACTTCCTGAGTTTAAGGCCTCTGCTGCTGCGTCATTAGCCGTCTGCTGGCCTCCTCGAGCAGATCTGCCGTCGACCTGGAATTCACCCCATTCAATTGTGTCACCGTCCTTATCGACATAGGACTTGACATCGGAGCTGGATTTAGCTCTCTGGATATTGGGGTGAAAGTGAGCCGACCTTGATGGTGATACAAGGTCGAAGAATCTCTGATTCGTGCATTGGTAGTTCCCTTCGAACTGCAATAGCACGTGGAGATGAGGTTCCCCATTTTCATGCAGCTCTCTGCATATTTTTATGAATTTTTTGTTGGTTGGGGTGTTGAGGTTACGAAGCTGGTCGAGAGCTTCTTCTTTGGTGAGAGAGCATTGGGGATATGTGAGGAAATAGTTTTTTGCTTTTATATTAAAACGCCCGGCTCTAGGCATGTTGAAAAAGCAAATGGTGGAACACAAACTTGCTGTATGAATTGGTGGAACGGTGGACAATTTATATGTGTCCACCAAATGGCATTTTGGTAATTTGAACAACTTTAATTTGAATTCTGAAAGCCTATTGGTCCTCCGTAAAGCGGGCACCGTATTAATATT

Gene Information

NCBI Accession YP_004339037.1
Location 90-431
Gene Name V2
Protein Name V2
Coding Region ATGGATATGTGGGACCCACTTCAGAACCCACTCCCAGATACTTTATACGGTTTCCGTTGTATGCTTTCTGTAAAATACCTGCAAGGTATTTTGAAGAAATACGAACCAGGAACCCTAGGGTTCGAACTTTGTTCCGAACTCATCCGCATACTGCGTGTCAAGCAATATGGTAGGGCGAATTCCCGTTTCGCGGAGATTTCATCCCTATGGGGGGAGACCGGTAAGACGGAGGCTGAACTTCGAGACAGCTATCGTGCCCTACACTGGGAATGCTGTCCCAATTGCTGCCCGAAGCTATGTCCCGGTTTCTCGAAGCGTCCAGATGAAGAGAAGGAAGGGTGA
Protein Sequence MDMWDPLQNPLPDTLYGFRCMLSVKYLQGILKKYEPGTLGFELCSELIRILRVKQYGRANSRFAEISSLWGETGKTEAELRDSYRALHWECCPNCCPKLCPGFSKRPDEEKEG

NCBI Accession YP_004339038.1
Location 256-1020
Gene Name V1
Protein Name coat protein
Coding Region ATGGTAGGGCGAATTCCCGTTTCGCGGAGATTTCATCCCTATGGGGGGAGACCGGTAAGACGGAGGCTGAACTTCGAGACAGCTATCGTGCCCTACACTGGGAATGCTGTCCCAATTGCTGCCCGAAGCTATGTCCCGGTTTCTCGAAGCGTCCAGATGAAGAGAAGGAAGGGTGATCGCATCCCGAAGGGATGTGTTGGTCCCTGTAAGGTACAGGACTATGAGTTCAAGATGGATGTCCCACATAGTGGGACCTTTGTTTGTGTTTCTGATTTTACTAGAGGTACTGGGCTTACCCATCGTTTGGGTAAGAGGGTGTGTATTAAGTCCATGGGTATTGACGGTAAGGTCTGGATGGACGACAACGTCGCCAAGAGGGACCATACCAACATTATTACTTACTGGTTGGTCCGAGATCGGAGGCCCAATAAGGATCCTTTGACATTTGTACAGGCGTTTGCAATGTGTGATAACGAGCCCACTACTGCTAAGATCCGTATGGATCTGAGAGATAGAATGCAGGTGTTGAAGAAGTTCTCTGTTACAGTTTCAGGAGGCCCTTATAACCACAAAGAGCAGGCTTTGATTAGGAAGTTTTTTAAGGGATTGTATAATCATGTTACTTATAATCATAAGGAGGAGGCCAAATATGAGAATCATTTAGAAAATGCGTTAATGTTGTATTCTGCTAGCAGTCATGCTAGTAATCCTGTGTATCAGACCCTGCGTTGCAGGGCTTATTTTTATGATTCGCACAACAATTAA
Protein Sequence MVGRIPVSRRFHPYGGRPVRRRLNFETAIVPYTGNAVPIAARSYVPVSRSVQMKRRKGDRIPKGCVGPCKVQDYEFKMDVPHSGTFVCVSDFTRGTGLTHRLGKRVCIKSMGIDGKVWMDDNVAKRDHTNIITYWLVRDRRPNKDPLTFVQAFAMCDNEPTTAKIRMDLRDRMQVLKKFSVTVSGGPYNHKEQALIRKFFKGLYNHVTYNHKEEAKYENHLENALMLYSASSHASNPVYQTLRCRAYFYDSHNN

NCBI Accession YP_004339039.1
Location 1017-1454
Gene Name Ren
Protein Name replication enhancer protein
Coding Region ATGGATTCACGCACCGGGGAGTCACTAAGTCATGCACAGATTACGAGAGCAGCAGAATTCTTCAACAATCCCATGTCTGTGGGTCAGACTGCTCCATTCCATCTACGACTGATATATGTCCATACCAACAACATCAACACAAAGAAGGTCATCAAGTTGCAGCTTCAAGTCAACCACAGGAACAGGAGGGAAATTGGATTCCAGAAGATCTTCCTCCAATTCCGAATAGTAACAACCCAGCTGACTGGTGTTATTCCCAGTTGGACTGGTATTTTGCAACGCCTTAAATGGCATATATGTAATAGCTTAGCTAGTTTAGGTTTTTTTTCTCTTATCAATTTAGTTTATGTAATCAGGCATCTGCCTGAATCAGTTAGATGGATTGAAGAAGTCGATGTAATAGATTGTAAAGATGATATAAAAATACTTCTTTATTAA
Protein Sequence MDSRTGESLSHAQITRAAEFFNNPMSVGQTAPFHLRLIYVHTNNINTKKVIKLQLQVNHRNRREIGFQKIFLQFRIVTTQLTGVIPSWTGILQRLKWHICNSLASLGFFSLINLVYVIRHLPESVRWIEEVDVIDCKDDIKILLY

NCBI Accession YP_004339040.1
Location 1168-1617
Gene Name Trap
Protein Name trans-activating protein
Coding Region ATGTCCAATCTCCCTTCTGGATACAAGAGGAAGTGTCCCATTCAGGAACCTCTGCACACAGCGGCGAAGAAGGCCAAGAGGAAGGCTCCTGAGCAAAGGACAAGGATAGTGTGGAAGGGCTGTGGTTGTTCAGCCTTCATCACCAACGCCTGCAAGTTCCAACATGGATTCACGCACCGGGGAGTCACTAAGTCATGCACAGATTACGAGAGCAGCAGAATTCTTCAACAATCCCATGTCTGTGGGTCAGACTGCTCCATTCCATCTACGACTGATATATGTCCATACCAACAACATCAACACAAAGAAGGTCATCAAGTTGCAGCTTCAAGTCAACCACAGGAACAGGAGGGAAATTGGATTCCAGAAGATCTTCCTCCAATTCCGAATAGTAACAACCCAGCTGACTGGTGTTATTCCCAGTTGGACTGGTATTTTGCAACGCCTTAA
Protein Sequence MSNLPSGYKRKCPIQEPLHTAAKKAKRKAPEQRTRIVWKGCGCSAFITNACKFQHGFTHRGVTKSCTDYESSRILQQSHVCGSDCSIPSTTDICPYQQHQHKEGHQVAASSQPQEQEGNWIPEDLPPIPNSNNPADWCYSQLDWYFATP

NCBI Accession YP_004339041.1
Location 1526-2620
Gene Name Rep
Protein Name replication-associated protein
Coding Region ATGCCTAGAGCCGGGCGTTTTAATATAAAAGCAAAAAACTATTTCCTCACATATCCCCAATGCTCTCTCACCAAAGAAGAAGCTCTCGACCAGCTTCGTAACCTCAACACCCCAACCAACAAAAAATTCATAAAAATATGCAGAGAGCTGCATGAAAATGGGGAACCTCATCTCCACGTGCTATTGCAGTTCGAAGGGAACTACCAATGCACGAATCAGAGATTCTTCGACCTTGTATCACCATCAAGGTCGGCTCACTTTCACCCCAATATCCAGAGAGCTAAATCCAGCTCCGATGTCAAGTCCTATGTCGATAAGGACGGTGACACAATTGAATGGGGTGAATTCCAGGTCGACGGCAGATCTGCTCGAGGAGGCCAGCAGACGGCTAATGACGCAGCAGCAGAGGCCTTAAACTCAGGAAGTAAAGAAGCTGCCTTACAAATTATCAGGGAAAAACTCCCTGAGAAATTTATTTTTCAATACCACAATTTATGTGGTAATTTAGATAGGATTTTTTCTCCTCCTCCTTCTGTATATTCTTCACCTTTTTTATCTTCTTCTTTCAATAATGTTCCTGACATTATCAGCGATTGGGCTGCTGAAAATGTCATGGATTCCGCTGCGCGGCCAGATAGGCCCATAAGTATTGTAATAGAAGGCCCAAGTAGGATAGGTAAAACAGTTTGGGCTAGGTCTTTAGGTCCACATAATTATCTGTGTGGTCATTTAGATCTGAGTCCAAAAGTGTATAGCAACAGTGCTTGGTATAACATCATTGATGACGTCAACCCCCAATACCTAAAGCACTTTAAAGAATTCATGGGGGCCCAGAAGGACTGGCAATCCAACTGTAAATACGGAAAGCCAGTTCAAATTAAAGGCGGAATTCCCACTATCTTCCTCTGCAATCCAGGAGAGGGTTCCTCATTTAAACTCTGGCTAGACAAACCAGAGCAAGGAGCACTCAAGAATTGGGCAACAGCAAACGCTATATTCTGCGATGTCCAATCTCCCTTCTGGATACAAGAGGAAGTGTCCCATTCAGGAACCTCTGCACACAGCGGCGAAGAAGGCCAAGAGGAAGGCTCCTGA
Protein Sequence MPRAGRFNIKAKNYFLTYPQCSLTKEEALDQLRNLNTPTNKKFIKICRELHENGEPHLHVLLQFEGNYQCTNQRFFDLVSPSRSAHFHPNIQRAKSSSDVKSYVDKDGDTIEWGEFQVDGRSARGGQQTANDAAAEALNSGSKEAALQIIREKLPEKFIFQYHNLCGNLDRIFSPPPSVYSSPFLSSSFNNVPDIISDWAAENVMDSAARPDRPISIVIEGPSRIGKTVWARSLGPHNYLCGHLDLSPKVYSNSAWYNIIDDVNPQYLKHFKEFMGAQKDWQSNCKYGKPVQIKGGIPTIFLCNPGEGSSFKLWLDKPEQGALKNWATANAIFCDVQSPFWIQEEVSHSGTSAHSGEEGQEEGS

NCBI Accession YP_004339042.1
Location 2206-2463
Gene Name C4
Protein Name C4
Coding Region ATGGGGAACCTCATCTCCACGTGCTATTGCAGTTCGAAGGGAACTACCAATGCACGAATCAGAGATTCTTCGACCTTGTATCACCATCAAGGTCGGCTCACTTTCACCCCAATATCCAGAGAGCTAAATCCAGCTCCGATGTCAAGTCCTATGTCGATAAGGACGGTGACACAATTGAATGGGGTGAATTCCAGGTCGACGGCAGATCTGCTCGAGGAGGCCAGCAGACGGCTAATGACGCAGCAGCAGAGGCCTTAA
Protein Sequence MGNLISTCYCSSKGTTNARIRDSSTLYHHQGRLTFTPISRELNPAPMSSPMSIRTVTQLNGVNSRSTADLLEEASRRLMTQQQRP