Sweet potato leaf curl Shandong virus
Basic Information
Genomic Organization
JBrowse
Genome
ACCGGTGCCCGCCGCGCCCTTTTAAAGTGGGCCCCACAAGGGGACTACGCGTCTTTTCCGTACTCTCTTGAATGATGACATTGCTTTATAAGGACCAATCAGGTTTCCACCCTTGGCGTCCAAGTATGGCTGAATTGTGGGACCCTTTGCAGAACCCACTACCAGATACTTTATACGGTTTTAGGTGTATGCTATCCATAAAATACTTGCAGAGTATTTTGAAGAAATACGAGCCAGGAACCTTAGGGTTCGAGCTCTGTTCGGAGTTAATCCGTATATTCAGAGTCCGGCAGTATGACAGGGCGAATTCCCGTTTCGCGGAGATTTCATCCCTATGGGGGGAGACCGGTAAGACGGAAGCTGAACTTCGAGACAGCTATCGTGCCCTACACTGGGAATGCTGTCCCAATTGCTGCCCGAAGCTATGTCCCGGTTTCAAGAGGCGTACGGATGAAGAGAAAGAGGGGTGATCGCATTCCGAAGGGATGCGTTGGACCCTGTAAGGTACAGGACTACGAATTCAAGATGGATGTCCCACACAGTGGGACCTTTGTCTGTGTATCTGATTTTACTAGGGGTACTGGGCTTACCCATCGTTTGGGTAAGAGGGTGTGCATTAAGTCCATGGGCATTGATGGTAAGGTCTGGATGGACGACAATGTCGCCAAAAGAGACCACACCAACATCATCACTTACTGGTTGATCCGTGATAGAAGGCCCAATAAGGACCCATTAACATTTAGTCAGGCCTTTACTATGTATGATAATGAGCCCACTACTGCTAAGATCCGAATGGATCTGAGAGATAGAATGCAGGTATTGAAGAAATTCTCTGTAACTGTTTCTGGTGGTCCTTATAACCATAAGGAACAGGCATTAGTTAGGAAGTTTTTTAAGAGTTTGTATAACCATGTTACGTACAACCACAAGGAAGAAGCTAAGTACGAAAATCATTTAGAAAATGCTTTGATGTTGTATTCTGCTAGCAGTCATGCTAGCAATCCTGTATATCAGACTCTGCGTTGTAGGGCTTATTTTTATGATTCGCACAATAATTAATAAAATTGTTCTTTCATTAATATAGTAGTGTTTTTACATCATCTTTGCAGTCAATTACATCTACTTCTTCTACCCACAAGAACTTGTGAGGTAAATTCCTAATTACATAAACTAAGTTATACAATGAAAAATATCCTAAACTACTTAATTCATTACAAATACGCCATTTAAGGCGTGTCAAAATACCAGTCCAACTGTGAATAGCACCAGTCAGACGGGTTGAAATTATCCTGAACTGCAGGAATATCTTGTGGAAGCCCATTTGCTTCCTCTCGCGGTGGTTCACTTGCAGTTGGAACTTCAGGATTGTTTTCCCCGCTTCGCTCCGGTGGGCGTATAAACACTTGAGGAAAAACGGTGCAGTCCGACCAATTGACATGGGGTTGTCGAAGAATTCGACTGCTCTCGTAGTCTGTGCATGACTTAGTAATTCCCCAGTGCGTGAATCCATTCTGGTACTTGCACTGAGGTGTGATGAAAGCTGAACAGCCGCACTGCTTCCACACTATCCTGGTCCTTTGCTCTGGTATGCGGCGTTTTTTTTTAGCCGCTGCGTGAATTGGCTCCTGAATTGGCGCCTTCCTCTTGTCTCCAGAATGGGCTTCGGACATTACAGAATACTGCGTTCTTGCAAGCCCACTGCCTCAGTGCGTCTTGTTCTGGCTTATCTAGCCAGGATTTAAATGATGATCCTTCGCCTGGATTGCAAAGGAAGATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTCCCGTACTTTGTGTTGGATTGCCAGTCCTTCTGGGCCCCCATAAATTCTTTAAAGTGCTTTAGGTATTGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTGTTGCTGTACACTTTAGGGCTTAGATCTAAATGCCCACACAAATAATTGTGAGGGCCCAAAGACCTGGCCCATACTGTTTTGCCTATTCTGCTTGGGCCTTCAATAACAATGGATATGGGTCTATCCGGCCGCGCAGCGGAATCCATGACATTTTCAGCGGCCCAGTCGCTGATAATGTCAGGAACGGCATTGAAAGAAGAAGAAGAAAAAGGGGAAGAATATACAGAAGGAGGAGGAGAAAAAATCCTATCTAAATTACTAACTAAATTATGAAATTGAAATAAATATTTTTCAGGGAGTTTCTCCCTGATTATTTGCAACGCAGCTTCCTTAGAACCTGCGTTTAAAGCCTCTGCGGCTGCGTCGTTAGCAGTCTGCTGACCTCCTCTAGCAGATCTGCCGTCGACCTGGAATTCACCCCAGGTGAGGGTATCTCCGTCCTTGTCAACGTAGGACTTGACGTCGGACGAGGATTTAGCTCCCTGGATGTTGGGGTGAAAGTGATTCGACCTTGTGGGTGAGACAAGGTCGAAGAATCTGCTATTTGTGCAGACGAATTTACCTTCGAACTGCACCAGCACATGGAGGTGAGGTTCCCCATCCTCGTGCAGTTCTTTGGCTATGTGAATGTATTTTTTGTTGGTCGGTGTTTGGATATTTAGAAGTTGGGCTAGACAGTCCTCTTTAGAGAGAGAACAGCGTGGGTAAGTAATGAAATAATTCTTGGCCTGAATTTTAAAACGTTTGGGAGGAGCCATTTGGAGACACGCATAAGTTCAAATGAATTGGAGACTGGAGACAATATATAGTATGTCTCCAAATGGCATTCTGGTAATTTAGAAAATCCTTTTAGCTTTAATTCAAATTCCGACAATTGTGGGCCCCCAAAAGGCGGGCACCGTATTAATATT
Gene Information
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NCBI Accession
|
ANI26494.1
|
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Location
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72-470 |
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Gene Name
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AV2 |
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Protein Name
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AV2 protein |
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Coding Region
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ATGATGACATTGCTTTATAAGGACCAATCAGGTTTCCACCCTTGGCGTCCAAGTATGGCTGAATTGTGGGACCCTTTGCAGAACCCACTACCAGATACTTTATACGGTTTTAGGTGTATGCTATCCATAAAATACTTGCAGAGTATTTTGAAGAAATACGAGCCAGGAACCTTAGGGTTCGAGCTCTGTTCGGAGTTAATCCGTATATTCAGAGTCCGGCAGTATGACAGGGCGAATTCCCGTTTCGCGGAGATTTCATCCCTATGGGGGGAGACCGGTAAGACGGAAGCTGAACTTCGAGACAGCTATCGTGCCCTACACTGGGAATGCTGTCCCAATTGCTGCCCGAAGCTATGTCCCGGTTTCAAGAGGCGTACGGATGAAGAGAAAGAGGGGTGA |
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Protein Sequence
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MMTLLYKDQSGFHPWRPSMAELWDPLQNPLPDTLYGFRCMLSIKYLQSILKKYEPGTLGFELCSELIRIFRVRQYDRANSRFAEISSLWGETGKTEAELRDSYRALHWECCPNCCPKLCPGFKRRTDEEKEG |
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NCBI Accession
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ANI26495.1
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Location
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295-1059 |
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Gene Name
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AV1 |
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Protein Name
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AV1 protein |
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Coding Region
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ATGACAGGGCGAATTCCCGTTTCGCGGAGATTTCATCCCTATGGGGGGAGACCGGTAAGACGGAAGCTGAACTTCGAGACAGCTATCGTGCCCTACACTGGGAATGCTGTCCCAATTGCTGCCCGAAGCTATGTCCCGGTTTCAAGAGGCGTACGGATGAAGAGAAAGAGGGGTGATCGCATTCCGAAGGGATGCGTTGGACCCTGTAAGGTACAGGACTACGAATTCAAGATGGATGTCCCACACAGTGGGACCTTTGTCTGTGTATCTGATTTTACTAGGGGTACTGGGCTTACCCATCGTTTGGGTAAGAGGGTGTGCATTAAGTCCATGGGCATTGATGGTAAGGTCTGGATGGACGACAATGTCGCCAAAAGAGACCACACCAACATCATCACTTACTGGTTGATCCGTGATAGAAGGCCCAATAAGGACCCATTAACATTTAGTCAGGCCTTTACTATGTATGATAATGAGCCCACTACTGCTAAGATCCGAATGGATCTGAGAGATAGAATGCAGGTATTGAAGAAATTCTCTGTAACTGTTTCTGGTGGTCCTTATAACCATAAGGAACAGGCATTAGTTAGGAAGTTTTTTAAGAGTTTGTATAACCATGTTACGTACAACCACAAGGAAGAAGCTAAGTACGAAAATCATTTAGAAAATGCTTTGATGTTGTATTCTGCTAGCAGTCATGCTAGCAATCCTGTATATCAGACTCTGCGTTGTAGGGCTTATTTTTATGATTCGCACAATAATTAA |
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Protein Sequence
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MTGRIPVSRRFHPYGGRPVRRKLNFETAIVPYTGNAVPIAARSYVPVSRGVRMKRKRGDRIPKGCVGPCKVQDYEFKMDVPHSGTFVCVSDFTRGTGLTHRLGKRVCIKSMGIDGKVWMDDNVAKRDHTNIITYWLIRDRRPNKDPLTFSQAFTMYDNEPTTAKIRMDLRDRMQVLKKFSVTVSGGPYNHKEQALVRKFFKSLYNHVTYNHKEEAKYENHLENALMLYSASSHASNPVYQTLRCRAYFYDSHNN |
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NCBI Accession
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ANI26496.1
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Location
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1076-1510 |
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Gene Name
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AC3 |
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Protein Name
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AC3 protein |
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Coding Region
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ATGGATTCACGCACTGGGGAATTACTAAGTCATGCACAGACTACGAGAGCAGTCGAATTCTTCGACAACCCCATGTCAATTGGTCGGACTGCACCGTTTTTCCTCAAGTGTTTATACGCCCACCGGAGCGAAGCGGGGAAAACAATCCTGAAGTTCCAACTGCAAGTGAACCACCGCGAGAGGAAGCAAATGGGCTTCCACAAGATATTCCTGCAGTTCAGGATAATTTCAACCCGTCTGACTGGTGCTATTCACAGTTGGACTGGTATTTTGACACGCCTTAAATGGCGTATTTGTAATGAATTAAGTAGTTTAGGATATTTTTCATTGTATAACTTAGTTTATGTAATTAGGAATTTACCTCACAAGTTCTTGTGGGTAGAAGAAGTAGATGTAATTGACTGCAAAGATGATGTAAAAACACTACTATATTAA |
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Protein Sequence
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MDSRTGELLSHAQTTRAVEFFDNPMSIGRTAPFFLKCLYAHRSEAGKTILKFQLQVNHRERKQMGFHKIFLQFRIISTRLTGAIHSWTGILTRLKWRICNELSSLGYFSLYNLVYVIRNLPHKFLWVEEVDVIDCKDDVKTLLY |
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NCBI Accession
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ANI26497.1
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Location
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1227-1670 |
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Gene Name
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AC2 |
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Protein Name
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AC2 protein |
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Coding Region
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ATGTCCGAAGCCCATTCTGGAGACAAGAGGAAGGCGCCAATTCAGGAGCCAATTCACGCAGCGGCTAAAAAAAAACGCCGCATACCAGAGCAAAGGACCAGGATAGTGTGGAAGCAGTGCGGCTGTTCAGCTTTCATCACACCTCAGTGCAAGTACCAGAATGGATTCACGCACTGGGGAATTACTAAGTCATGCACAGACTACGAGAGCAGTCGAATTCTTCGACAACCCCATGTCAATTGGTCGGACTGCACCGTTTTTCCTCAAGTGTTTATACGCCCACCGGAGCGAAGCGGGGAAAACAATCCTGAAGTTCCAACTGCAAGTGAACCACCGCGAGAGGAAGCAAATGGGCTTCCACAAGATATTCCTGCAGTTCAGGATAATTTCAACCCGTCTGACTGGTGCTATTCACAGTTGGACTGGTATTTTGACACGCCTTAA |
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Protein Sequence
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MSEAHSGDKRKAPIQEPIHAAAKKKRRIPEQRTRIVWKQCGCSAFITPQCKYQNGFTHWGITKSCTDYESSRILRQPHVNWSDCTVFPQVFIRPPERSGENNPEVPTASEPPREEANGLPQDIPAVQDNFNPSDWCYSQLDWYFDTP |
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NCBI Accession
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ANI26498.1
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Location
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1603-2673 |
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Gene Name
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AC1 |
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Protein Name
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AC1 protein |
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Coding Region
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ATGGCTCCTCCCAAACGTTTTAAAATTCAGGCCAAGAATTATTTCATTACTTACCCACGCTGTTCTCTCTCTAAAGAGGACTGTCTAGCCCAACTTCTAAATATCCAAACACCGACCAACAAAAAATACATTCACATAGCCAAAGAACTGCACGAGGATGGGGAACCTCACCTCCATGTGCTGGTGCAGTTCGAAGGTAAATTCGTCTGCACAAATAGCAGATTCTTCGACCTTGTCTCACCCACAAGGTCGAATCACTTTCACCCCAACATCCAGGGAGCTAAATCCTCGTCCGACGTCAAGTCCTACGTTGACAAGGACGGAGATACCCTCACCTGGGGTGAATTCCAGGTCGACGGCAGATCTGCTAGAGGAGGTCAGCAGACTGCTAACGACGCAGCCGCAGAGGCTTTAAACGCAGGTTCTAAGGAAGCTGCGTTGCAAATAATCAGGGAGAAACTCCCTGAAAAATATTTATTTCAATTTCATAATTTAGTTAGTAATTTAGATAGGATTTTTTCTCCTCCTCCTTCTGTATATTCTTCCCCTTTTTCTTCTTCTTCTTTCAATGCCGTTCCTGACATTATCAGCGACTGGGCCGCTGAAAATGTCATGGATTCCGCTGCGCGGCCGGATAGACCCATATCCATTGTTATTGAAGGCCCAAGCAGAATAGGCAAAACAGTATGGGCCAGGTCTTTGGGCCCTCACAATTATTTGTGTGGGCATTTAGATCTAAGCCCTAAAGTGTACAGCAACAGTGCTTGGTATAACGTCATTGATGACGTCAACCCCCAATACCTAAAGCACTTTAAAGAATTTATGGGGGCCCAGAAGGACTGGCAATCCAACACAAAGTACGGGAAGCCAGTTCAAATTAAAGGTGGAATTCCCACTATCTTCCTTTGCAATCCAGGCGAAGGATCATCATTTAAATCCTGGCTAGATAAGCCAGAACAAGACGCACTGAGGCAGTGGGCTTGCAAGAACGCAGTATTCTGTAATGTCCGAAGCCCATTCTGGAGACAAGAGGAAGGCGCCAATTCAGGAGCCAATTCACGCAGCGGCTAA |
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Protein Sequence
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MAPPKRFKIQAKNYFITYPRCSLSKEDCLAQLLNIQTPTNKKYIHIAKELHEDGEPHLHVLVQFEGKFVCTNSRFFDLVSPTRSNHFHPNIQGAKSSSDVKSYVDKDGDTLTWGEFQVDGRSARGGQQTANDAAAEALNAGSKEAALQIIREKLPEKYLFQFHNLVSNLDRIFSPPPSVYSSPFSSSSFNAVPDIISDWAAENVMDSAARPDRPISIVIEGPSRIGKTVWARSLGPHNYLCGHLDLSPKVYSNSAWYNVIDDVNPQYLKHFKEFMGAQKDWQSNTKYGKPVQIKGGIPTIFLCNPGEGSSFKSWLDKPEQDALRQWACKNAVFCNVRSPFWRQEEGANSGANSRSG |
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NCBI Accession
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ANI26499.1
|
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Location
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2259-2516 |
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Gene Name
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AC4 |
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Protein Name
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AC4 protein |
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Coding Region
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ATGGGGAACCTCACCTCCATGTGCTGGTGCAGTTCGAAGGTAAATTCGTCTGCACAAATAGCAGATTCTTCGACCTTGTCTCACCCACAAGGTCGAATCACTTTCACCCCAACATCCAGGGAGCTAAATCCTCGTCCGACGTCAAGTCCTACGTTGACAAGGACGGAGATACCCTCACCTGGGGTGAATTCCAGGTCGACGGCAGATCTGCTAGAGGAGGTCAGCAGACTGCTAACGACGCAGCCGCAGAGGCTTTAA |
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Protein Sequence
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MGNLTSMCWCSSKVNSSAQIADSSTLSHPQGRITFTPTSRELNPRPTSSPTLTRTEIPSPGVNSRSTADLLEEVSRLLTTQPQRL |