Stachytarpheta leaf curl virus
Basic Information
Genus |
Begomovirus
|
NCBI Assembly |
GCF_000843765.1 |
Isolate |
China:Hainan province |
Release date |
2015/2/12 |
Submitter |
Zhou,X., Fan,S. |
Host |
|
Vector |
|
Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
CCGGATGGCCGCGATTTTTTTAAGGTGGTCCCACCCACGTGCATTGGTCGGCCACTGAGAACGCTCCCTCAAAGCCTATTTAATTCAAATGTATTATAAATACTTGGTCCCCAAGTACTAAAGCTAAACATGTGGGATCCACTTGTAAACGAGTTCCCTGAAACCGTACATGGTCTACGGTGCATGCTCGCTGTAAAATACTTGCAGTTAGTTGAGCAGACATACTCTCCGGATACGTTGGGGTACGATCTCGTGCGAGATTTAATTTTAGTTATCAGAGCTCGAGACTATGTCGAAGCGTCCCGCCGATATAGTCATTTCCACTCCCGCATCCAAGGTGCGTCGCCGGCTGAACTTCGACAGCCCGTATGTCAACCGTGCTGCTGCCCCCACTGTCCTCGTCACAAACAAAAGGAGGACGTGGGTGAATCGGCCCATGTATCGCAAGCCCAGACTATTCAGAACGTACAGAAGTCCTGATGTGCCCAAAGGTTGTGAAGGCCCATGCAAAGTCCAATCGTATGAACAGAGGCACGACATATCCCATGTGGGTAAAGTATTATGTGTTAGTGATGTCACTCGTGGTAGTGGGCTTACCCATCGTGTTGGTAAGAGATTCTGTGTGAAGTCCGTTTATGTATTGGGTAAAATATGGATGGATGAAAATATCAAGACGAAGAACCATACGAACACTGTGATGTTTTATCTTGTTCGTGATAGAAGGCCCTTTGGTACTGCTATGGACTTTGGTCAGGTGTTTAACATGTATGATAATGAGCCCAGTACTGCTACTATCAAGAATGATCTTCGAGATCGTTATCAAGTTTTGAGGAAATTCACTTCAACAGTCACAGGTGGTCAATATGCTTCTAAGGAACAGGCGTTGGTTAGGAAATTTATGAAGATAAATAATTATGTAGTTTATAATCATCAAGAAGCTGCTAAGTATGAGAATCATACTGAGAATGCGTTATTATTGTATATGGCATGTACTCATGCCAGTAATCCAGTGTATGCTACTTTGAAGATCAAAATCTATTTCTATGATTCTGTTCAGAATTAATAAAAATTGAATTTTATTATACTTGATAATTCTTCATCAATTGTCCCCTCTAATACATTGTATAATACATGAGAAAATGCCCTAATTACATTGTTTATACTAATCACTCCCAAATTGTCTAAATATTTAATACATTGATACTTAAATACTTTTAAAAAACACCAAGTCTGAGGACGTAAATGAGTCCAAATTCTGCAGATTAGAAAACATTGGTGTATCCCCAACGCTTTCCTCAGGTTGTAGTTGAATTGGACTTGGAGTGTTATTACGTCGTGGTTCGTTGAGAACGGCCTCTGGTCGTGCTGGGTGATTTTGAAATATAGGGGATTTCTGACCGTCCAGATATACACGCCATTCTCTGCTTGAGCTGCAGTGATGGGTTCCCCGGTGCGAAAATCCATGATTGTGGCAGCCTATAGCTATGAAATAAGAGCATCCACAAGGGAGGTCAACTCGTCGTCTCCTCGTTGTTCGCTTGGCTATTTTGTGTTGCACCTTGATTGGAACCTGAGTAGAGTGGCCGTTGGATGGTGACGAAGATCGCATTATGTATAGCCCAATTTTTTAATGCGGAATTCTTTTCTTCGTCTAAGAACTCTTTATAGCTGGAATTGGGTCCTGGATTGCATAGGAAGATTGTTGGGATACCACCTTTAATTTGAACTGGCTTCCCATACTTTGTATTGGATTGCCAGTCCCTTTGGGCCCCCATGAATTCCTTAAAGTGCTTTAGATAGTGGGGGTCGACGTCATCAATGACGTTATACCAAGCATCATTGCTGTATACCTTTGGGCTGAGATCAAGATGTCCACACAGATAATTGTGTGGTCCTAACGACCTAGCCCACATTGTTTTACCAGTACGACTATCACCTTCTATCACAATACTAATCGGTCTCAAAGGCCGCGCAGCGGCATTGACAACATTATTTGCAGACCATTCATGAAGTTCTTCTGGAACTTGATCGAAAGAAGAAGAAGAAAAAGGACAAACAAATACCTCTAAAGGAGGTGCAAAAATCCTATCTAAATTAGCATTTAAATTATGAAATTGTAAAACATAATCTTTTGGAGCTAACTCCTTAATTACATTAAGAGCCTCTGACTTACTGCCTGTGTTAAGTGCTGCGGCGTAAGCGTCATTGGCTGATTGTTGTCCCCCTCTTGCAGATCGTCCGTCGATCTGAAACTCTCCCCACTCGAGGGTGTCTCCGTCCTTATCGATATAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGAGACCAAGTCGAAGAATCTGTTATTCGTGCAGACGTATTTTCCCTCGAACTGGATAAGCACGTGGATATGAGGGCTCCCATCTTCGTGAAGCTCTCTGCAGATTTTGATGTATTTTTTGTTGGTTGGGGTTTCTAGGTTTTGAAGTTGGGAGAGTGCTTCCTCTTTAGTTAGAGAGCACTGTGGATAAGTGAGGAAATAATTTTTAGCTTGTATTTTAAAACGACGCGGGGGAGGCATTTTGAGCGTCGTTTTGTATTGGAGACAATCAACTCTATGAAATGAATTGGAGACTGGAGTACAATATATAGTGTGTCTCCAAATGGCATTCTCGTAATTCCTCATAGAAATTCAAAATTTGAATTGGTAAAGCGGCCATCCGTATAATATTA
Gene Information
NCBI Accession
|
NP_671448.1
|
Location
|
130-480 |
Gene Name
|
AV2 |
Protein Name
|
pre-coat protein |
Coding Region
|
ATGTGGGATCCACTTGTAAACGAGTTCCCTGAAACCGTACATGGTCTACGGTGCATGCTCGCTGTAAAATACTTGCAGTTAGTTGAGCAGACATACTCTCCGGATACGTTGGGGTACGATCTCGTGCGAGATTTAATTTTAGTTATCAGAGCTCGAGACTATGTCGAAGCGTCCCGCCGATATAGTCATTTCCACTCCCGCATCCAAGGTGCGTCGCCGGCTGAACTTCGACAGCCCGTATGTCAACCGTGCTGCTGCCCCCACTGTCCTCGTCACAAACAAAAGGAGGACGTGGGTGAATCGGCCCATGTATCGCAAGCCCAGACTATTCAGAACGTACAGAAGTCCTGA |
Protein Sequence
|
MWDPLVNEFPETVHGLRCMLAVKYLQLVEQTYSPDTLGYDLVRDLILVIRARDYVEASRRYSHFHSRIQGASPAELRQPVCQPCCCPHCPRHKQKEDVGESAHVSQAQTIQNVQKS |
NCBI Accession
|
NP_671449.1
|
Location
|
290-1063 |
Gene Name
|
AV1 |
Protein Name
|
coat protein |
Coding Region
|
ATGTCGAAGCGTCCCGCCGATATAGTCATTTCCACTCCCGCATCCAAGGTGCGTCGCCGGCTGAACTTCGACAGCCCGTATGTCAACCGTGCTGCTGCCCCCACTGTCCTCGTCACAAACAAAAGGAGGACGTGGGTGAATCGGCCCATGTATCGCAAGCCCAGACTATTCAGAACGTACAGAAGTCCTGATGTGCCCAAAGGTTGTGAAGGCCCATGCAAAGTCCAATCGTATGAACAGAGGCACGACATATCCCATGTGGGTAAAGTATTATGTGTTAGTGATGTCACTCGTGGTAGTGGGCTTACCCATCGTGTTGGTAAGAGATTCTGTGTGAAGTCCGTTTATGTATTGGGTAAAATATGGATGGATGAAAATATCAAGACGAAGAACCATACGAACACTGTGATGTTTTATCTTGTTCGTGATAGAAGGCCCTTTGGTACTGCTATGGACTTTGGTCAGGTGTTTAACATGTATGATAATGAGCCCAGTACTGCTACTATCAAGAATGATCTTCGAGATCGTTATCAAGTTTTGAGGAAATTCACTTCAACAGTCACAGGTGGTCAATATGCTTCTAAGGAACAGGCGTTGGTTAGGAAATTTATGAAGATAAATAATTATGTAGTTTATAATCATCAAGAAGCTGCTAAGTATGAGAATCATACTGAGAATGCGTTATTATTGTATATGGCATGTACTCATGCCAGTAATCCAGTGTATGCTACTTTGAAGATCAAAATCTATTTCTATGATTCTGTTCAGAATTAA |
Protein Sequence
|
MSKRPADIVISTPASKVRRRLNFDSPYVNRAAAPTVLVTNKRRTWVNRPMYRKPRLFRTYRSPDVPKGCEGPCKVQSYEQRHDISHVGKVLCVSDVTRGSGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNTVMFYLVRDRRPFGTAMDFGQVFNMYDNEPSTATIKNDLRDRYQVLRKFTSTVTGGQYASKEQALVRKFMKINNYVVYNHQEAAKYENHTENALLLYMACTHASNPVYATLKIKIYFYDSVQN |
NCBI Accession
|
NP_671450.1
|
Location
|
1060-1464 |
Gene Name
|
AC3 |
Protein Name
|
replication enhancer protein |
Coding Region
|
ATGGATTTTCGCACCGGGGAACCCATCACTGCAGCTCAAGCAGAGAATGGCGTGTATATCTGGACGGTCAGAAATCCCCTATATTTCAAAATCACCCAGCACGACCAGAGGCCGTTCTCAACGAACCACGACGTAATAACACTCCAAGTCCAATTCAACTACAACCTGAGGAAAGCGTTGGGGATACACCAATGTTTTCTAATCTGCAGAATTTGGACTCATTTACGTCCTCAGACTTGGTGTTTTTTAAAAGTATTTAAGTATCAATGTATTAAATATTTAGACAATTTGGGAGTGATTAGTATAAACAATGTAATTAGGGCATTTTCTCATGTATTATACAATGTATTAGAGGGGACAATTGATGAAGAATTATCAAGTATAATAAAATTCAATTTTTATTAA |
Protein Sequence
|
MDFRTGEPITAAQAENGVYIWTVRNPLYFKITQHDQRPFSTNHDVITLQVQFNYNLRKALGIHQCFLICRIWTHLRPQTWCFLKVFKYQCIKYLDNLGVISINNVIRAFSHVLYNVLEGTIDEELSSIIKFNFY |
NCBI Accession
|
NP_671451.1
|
Location
|
1205-1609 |
Gene Name
|
AC2 |
Protein Name
|
transcriptional activator protein |
Coding Region
|
ATGCGATCTTCGTCACCATCCAACGGCCACTCTACTCAGGTTCCAATCAAGGTGCAACACAAAATAGCCAAGCGAACAACGAGGAGACGACGAGTTGACCTCCCTTGTGGATGCTCTTATTTCATAGCTATAGGCTGCCACAATCATGGATTTTCGCACCGGGGAACCCATCACTGCAGCTCAAGCAGAGAATGGCGTGTATATCTGGACGGTCAGAAATCCCCTATATTTCAAAATCACCCAGCACGACCAGAGGCCGTTCTCAACGAACCACGACGTAATAACACTCCAAGTCCAATTCAACTACAACCTGAGGAAAGCGTTGGGGATACACCAATGTTTTCTAATCTGCAGAATTTGGACTCATTTACGTCCTCAGACTTGGTGTTTTTTAAAAGTATTTAA |
Protein Sequence
|
MRSSSPSNGHSTQVPIKVQHKIAKRTTRRRRVDLPCGCSYFIAIGCHNHGFSHRGTHHCSSSREWRVYLDGQKSPIFQNHPARPEAVLNEPRRNNTPSPIQLQPEESVGDTPMFSNLQNLDSFTSSDLVFFKSI |
NCBI Accession
|
NP_671452.1
|
Location
|
1512-2597 |
Gene Name
|
AC1 |
Protein Name
|
rep protein |
Coding Region
|
ATGCCTCCCCCGCGTCGTTTTAAAATACAAGCTAAAAATTATTTCCTCACTTATCCACAGTGCTCTCTAACTAAAGAGGAAGCACTCTCCCAACTTCAAAACCTAGAAACCCCAACCAACAAAAAATACATCAAAATCTGCAGAGAGCTTCACGAAGATGGGAGCCCTCATATCCACGTGCTTATCCAGTTCGAGGGAAAATACGTCTGCACGAATAACAGATTCTTCGACTTGGTCTCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTATATCGATAAGGACGGAGACACCCTCGAGTGGGGAGAGTTTCAGATCGACGGACGATCTGCAAGAGGGGGACAACAATCAGCCAATGACGCTTACGCCGCAGCACTTAACACAGGCAGTAAGTCAGAGGCTCTTAATGTAATTAAGGAGTTAGCTCCAAAAGATTATGTTTTACAATTTCATAATTTAAATGCTAATTTAGATAGGATTTTTGCACCTCCTTTAGAGGTATTTGTTTGTCCTTTTTCTTCTTCTTCTTTCGATCAAGTTCCAGAAGAACTTCATGAATGGTCTGCAAATAATGTTGTCAATGCCGCTGCGCGGCCTTTGAGACCGATTAGTATTGTGATAGAAGGTGATAGTCGTACTGGTAAAACAATGTGGGCTAGGTCGTTAGGACCACACAATTATCTGTGTGGACATCTTGATCTCAGCCCAAAGGTATACAGCAATGATGCTTGGTATAACGTCATTGATGACGTCGACCCCCACTATCTAAAGCACTTTAAGGAATTCATGGGGGCCCAAAGGGACTGGCAATCCAATACAAAGTATGGGAAGCCAGTTCAAATTAAAGGTGGTATCCCAACAATCTTCCTATGCAATCCAGGACCCAATTCCAGCTATAAAGAGTTCTTAGACGAAGAAAAGAATTCCGCATTAAAAAATTGGGCTATACATAATGCGATCTTCGTCACCATCCAACGGCCACTCTACTCAGGTTCCAATCAAGGTGCAACACAAAATAGCCAAGCGAACAACGAGGAGACGACGAGTTGA |
Protein Sequence
|
MPPPRRFKIQAKNYFLTYPQCSLTKEEALSQLQNLETPTNKKYIKICRELHEDGSPHIHVLIQFEGKYVCTNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYIDKDGDTLEWGEFQIDGRSARGGQQSANDAYAAALNTGSKSEALNVIKELAPKDYVLQFHNLNANLDRIFAPPLEVFVCPFSSSSFDQVPEELHEWSANNVVNAAARPLRPISIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNSALKNWAIHNAIFVTIQRPLYSGSNQGATQNSQANNEETTS |
NCBI Accession
|
NP_671453.1
|
Location
|
2150-2440 |
Gene Name
|
AC4 |
Protein Name
|
transcriptional regulator protein |
Coding Region
|
ATGGGAGCCCTCATATCCACGTGCTTATCCAGTTCGAGGGAAAATACGTCTGCACGAATAACAGATTCTTCGACTTGGTCTCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTATATCGATAAGGACGGAGACACCCTCGAGTGGGGAGAGTTTCAGATCGACGGACGATCTGCAAGAGGGGGACAACAATCAGCCAATGACGCTTACGCCGCAGCACTTAACACAGGCAGTAAGTCAGAGGCTCTTAATGTAA |
Protein Sequence
|
MGALISTCLSSSRENTSARITDSSTWSPQPGQHISIRTFRELNPAPTSSPISIRTETPSSGESFRSTDDLQEGDNNQPMTLTPQHLTQAVSQRLLM |