Spilanthes yellow vein virus
Basic Information
Genus |
Begomovirus
|
NCBI Assembly |
GCF_000873265.1 |
Isolate |
Viet Nam: Dalat |
Release date |
2015/2/13 |
Submitter |
Ha,C., Coombs,S., Revill,P., Harding,R., Vu,M., Dale,J., Ha,C.V., Revill,P.A., Harding,R.M., Vu,M.T., Dale,J.L. |
Host |
|
Vector |
|
Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGACGGCCGCGATTTTTTATACATGGCCCCACCACGCATTAACAAAGGAAAAAGGAAAAAATGGTCCCCTGGGTTTTATCCAATCAGATCTTTTATTCAAACGTTAATAATAAATGTGGTCCCCTATTAAATGCGCTCCCCCCAAGCAAAATTCAAAAAATGTGGGATCCGCTCCTCCATCCTTTTCCAGAAACCGTACATGGTTTCCGTTGTATGTTAGCCGTAAAGTATTTACAGTTAGTAGAGTCTACGTATTCCCCAGATACGTTAGGGTTTGATCTTATACGTGATTTAATTACAGTAATTAGGTGTAGTAACTATGTCGAAGCGACCAGCAAGTATTGTCATTTCCACGCCCTCATCGAAGGTACGTCGGAGACTCAACTTCGACAGCCCGTATGCGAACCGTGCCTCTGCCCCCATTGTCCGCGTCACAAAGGGTCAGGTATGGACCAACAGACCTATGTTCCGAAAGCCTCGGATGTACAGAATGTTCAGAAGCCCTGATGTTCCCAGAGGTTGTGAGGGTCCTTGTAAGGTTCAGTCTTATGATTCTAAGCATGACATTGGTCATCTTGGTAAGGTACTTTGTGTTTCGGATGTTACCCGTGGTAACGGCCTTACCCATCGTACTGGTAAACGTTTTTGTGTTAAGTCGTTGTATGTTATTGGGAAGATATGGATGGATGAGAAGATTAAGAATAAGAATCATACTAACACCGTTATGTTCTGGTTAGTTAGAGATAGAAGGCCTTCAGGTGTACCTCAGGATTTTCAACAGGTTTTTAATGTTTATGATAATGAACCTGCGACAGCTACTGTGAAGAACGATTCTCGAGATCGTTACCAGGTTTTACGGCGTTTTCAGTCTACTGTTACTGGTGGTCAGTATGCTTCTAAAGAACAGGCTATTATTCGGAAGTTTATCCGTGTAAACACACATGTGACGTATAATCATCAAGAGGATGCGAAATATGCCAATCATACGGAGAATGCTTTGTTATTGTATATGTGTTGTACTCATCATGAGAACCCTGTGTATGGAACTCTAAAGATCCGCAGTTATTTTTACGACTCGGTATCTAATTAATAAATGTTGTATTTTATATCATTTGTCTCTTCGATATCAACTGTACCGTTAAGACGTTCATACAATACATATTTAACTGCTCTAATTACATTATTAACAGAAATTACACCTAAATTATTCAAATACATCATTAATTGGGTCTTGAAGACTCTCAAGAAACGCGATGTCTGAGGTTGTAAGCTCGTCCAGACTCGATAGGTTAGAAAACATTTGTGTATCCCCAATGCTTTCCGAAGGTTGTAGTTGAATTGTATCCTTATTGTTATGATGTCTGTCTCCATGAGGAATGGTCGGTTCTCGTGGTTGATGATCTTGAAATATAGGGGATTTGTTATTGTCCAGATATAGACGCCATTCTCTGCTTGAGCTGCAGTGATAAGTTCCCCTGTGCGAGAATCCATGGTTGACACAGTTTATTGATAGGTAGTATGTGCAACCACACTTCAGGTCAATCCTCCGTCTCCTGATGGTCTTCTTCTTCGCCTCTCGGTGCTGGACCTTGATATTCGGTAGAGTACAATGGCTCGTTGAGGGTGATGAAGATCGCATTGTAATTAGACCACCTCTTGAGCTTTGCGTTCTTTTCCTCTTCTAAAAACTCTGTATATGAAGAGGTTGGACCTGGATTGCAGAGGAAGATAGTGGGTATCCCACCTTTAATTTGAACCGGCTTTCCGTACTTTCTGTTGCTTTGCCAGTTTGTTTGGGACCCCATGAATTCTTTATAGTGCTTTAGATAGTGCGGGTCGACGTCATCTATTACGTTATACCATGCGTCGTTAGAGAACACATTAGGGTTTAAGTCTAAATGTCCACATAAGTAATTATGTGGCCCTAATGACCTGGCCCACAACGTTTTCCCGGTTCGACTTTCACCTTCAATGACAATGCCTTTGGGCCTTAGAGGCCGCGCAGCGGAATTTGTCACAAATTCTTGAGCCCATACCTTCATCATGGTCGGGACATTGTCAAATGCTGTCGTGGGAAATGGACACACAAACGGTTCTGGTGGTTTCTCGAATTCTTTTTCGATATTTGCCACTATGTTGTGCCGTTGTAATAGATATGTCCACGGTTGCTTCTCCTTTACTAATTGCTTGGCAGCATTTACGGATGTTGCGTTCCAGACCTCTGCACCAAGATCGTTAAGATCCTGTTGGCCTCCTCTAGCACTCCTTCCGTCGATCTGGAATTCTCCCCATTCCAGTGTGTCTCCGTCCTTGTCGATATAGGACTTGACATCGGAGCTTGATTTAGCTCCCTGTATGTTCGGATGGAAATGTGTTGACCGGGTTGGGGATACAAGGTCGAAGAATCGTTTATTCGTGCAGACGTATTTCCCCTCGAATTGAATAAGCACGTGGAGATGAGGGCTCCCATCTTCGTGTAGCTCTCTGCAGATTTTAATGAATTTTTTATTTGTTGGACAAACTAGGTTACTTAATTGGGAAAGTGTTTCTTCTTTGGTGAGAGAGCAGTGTGGGTATGTAAGAAAATAATTTCTGGCTGAAACTCTAAATCTGTTATTCGGAGCCATTTATTGCTCTGGATTGGTGACACTCTGAGCTCGAAGAGTATAATAGTATTGGTGACTGGTGTACAATATATAGAGGTGAGTAAAAGCCTCAAATTCCACGTGGAATCTATCGCGGCCGTCCTTATAATATT
Gene Information
NCBI Accession
|
YP_001285760.1
|
Location
|
163-510 |
Gene Name
|
AV2 |
Protein Name
|
AV2 protein |
Coding Region
|
ATGTGGGATCCGCTCCTCCATCCTTTTCCAGAAACCGTACATGGTTTCCGTTGTATGTTAGCCGTAAAGTATTTACAGTTAGTAGAGTCTACGTATTCCCCAGATACGTTAGGGTTTGATCTTATACGTGATTTAATTACAGTAATTAGGTGTAGTAACTATGTCGAAGCGACCAGCAAGTATTGTCATTTCCACGCCCTCATCGAAGGTACGTCGGAGACTCAACTTCGACAGCCCGTATGCGAACCGTGCCTCTGCCCCCATTGTCCGCGTCACAAAGGGTCAGGTATGGACCAACAGACCTATGTTCCGAAAGCCTCGGATGTACAGAATGTTCAGAAGCCCTGA |
Protein Sequence
|
MWDPLLHPFPETVHGFRCMLAVKYLQLVESTYSPDTLGFDLIRDLITVIRCSNYVEATSKYCHFHALIEGTSETQLRQPVCEPCLCPHCPRHKGSGMDQQTYVPKASDVQNVQKP |
NCBI Accession
|
YP_001285761.1
|
Location
|
323-1093 |
Gene Name
|
AV1 |
Protein Name
|
CP protein |
Coding Region
|
ATGTCGAAGCGACCAGCAAGTATTGTCATTTCCACGCCCTCATCGAAGGTACGTCGGAGACTCAACTTCGACAGCCCGTATGCGAACCGTGCCTCTGCCCCCATTGTCCGCGTCACAAAGGGTCAGGTATGGACCAACAGACCTATGTTCCGAAAGCCTCGGATGTACAGAATGTTCAGAAGCCCTGATGTTCCCAGAGGTTGTGAGGGTCCTTGTAAGGTTCAGTCTTATGATTCTAAGCATGACATTGGTCATCTTGGTAAGGTACTTTGTGTTTCGGATGTTACCCGTGGTAACGGCCTTACCCATCGTACTGGTAAACGTTTTTGTGTTAAGTCGTTGTATGTTATTGGGAAGATATGGATGGATGAGAAGATTAAGAATAAGAATCATACTAACACCGTTATGTTCTGGTTAGTTAGAGATAGAAGGCCTTCAGGTGTACCTCAGGATTTTCAACAGGTTTTTAATGTTTATGATAATGAACCTGCGACAGCTACTGTGAAGAACGATTCTCGAGATCGTTACCAGGTTTTACGGCGTTTTCAGTCTACTGTTACTGGTGGTCAGTATGCTTCTAAAGAACAGGCTATTATTCGGAAGTTTATCCGTGTAAACACACATGTGACGTATAATCATCAAGAGGATGCGAAATATGCCAATCATACGGAGAATGCTTTGTTATTGTATATGTGTTGTACTCATCATGAGAACCCTGTGTATGGAACTCTAAAGATCCGCAGTTATTTTTACGACTCGGTATCTAATTAA |
Protein Sequence
|
MSKRPASIVISTPSSKVRRRLNFDSPYANRASAPIVRVTKGQVWTNRPMFRKPRMYRMFRSPDVPRGCEGPCKVQSYDSKHDIGHLGKVLCVSDVTRGNGLTHRTGKRFCVKSLYVIGKIWMDEKIKNKNHTNTVMFWLVRDRRPSGVPQDFQQVFNVYDNEPATATVKNDSRDRYQVLRRFQSTVTGGQYASKEQAIIRKFIRVNTHVTYNHQEDAKYANHTENALLLYMCCTHHENPVYGTLKIRSYFYDSVSN |
NCBI Accession
|
YP_001285762.1
|
Location
|
1090-1494 |
Gene Name
|
AC3 |
Protein Name
|
REn protein |
Coding Region
|
ATGGATTCTCGCACAGGGGAACTTATCACTGCAGCTCAAGCAGAGAATGGCGTCTATATCTGGACAATAACAAATCCCCTATATTTCAAGATCATCAACCACGAGAACCGACCATTCCTCATGGAGACAGACATCATAACAATAAGGATACAATTCAACTACAACCTTCGGAAAGCATTGGGGATACACAAATGTTTTCTAACCTATCGAGTCTGGACGAGCTTACAACCTCAGACATCGCGTTTCTTGAGAGTCTTCAAGACCCAATTAATGATGTATTTGAATAATTTAGGTGTAATTTCTGTTAATAATGTAATTAGAGCAGTTAAATATGTATTGTATGAACGTCTTAACGGTACAGTTGATATCGAAGAGACAAATGATATAAAATACAACATTTATTAA |
Protein Sequence
|
MDSRTGELITAAQAENGVYIWTITNPLYFKIINHENRPFLMETDIITIRIQFNYNLRKALGIHKCFLTYRVWTSLQPQTSRFLRVFKTQLMMYLNNLGVISVNNVIRAVKYVLYERLNGTVDIEETNDIKYNIY |
NCBI Accession
|
YP_001285763.1
|
Location
|
1208-1642 |
Gene Name
|
AC2 |
Protein Name
|
TrAP protein |
Coding Region
|
ATGCGATCTTCATCACCCTCAACGAGCCATTGTACTCTACCGAATATCAAGGTCCAGCACCGAGAGGCGAAGAAGAAGACCATCAGGAGACGGAGGATTGACCTGAAGTGTGGTTGCACATACTACCTATCAATAAACTGTGTCAACCATGGATTCTCGCACAGGGGAACTTATCACTGCAGCTCAAGCAGAGAATGGCGTCTATATCTGGACAATAACAAATCCCCTATATTTCAAGATCATCAACCACGAGAACCGACCATTCCTCATGGAGACAGACATCATAACAATAAGGATACAATTCAACTACAACCTTCGGAAAGCATTGGGGATACACAAATGTTTTCTAACCTATCGAGTCTGGACGAGCTTACAACCTCAGACATCGCGTTTCTTGAGAGTCTTCAAGACCCAATTAATGATGTATTTGAATAA |
Protein Sequence
|
MRSSSPSTSHCTLPNIKVQHREAKKKTIRRRRIDLKCGCTYYLSINCVNHGFSHRGTYHCSSSREWRLYLDNNKSPIFQDHQPREPTIPHGDRHHNNKDTIQLQPSESIGDTQMFSNLSSLDELTTSDIAFLESLQDPINDVFE |
NCBI Accession
|
YP_001285764.1
|
Location
|
1542-2630 |
Gene Name
|
AC1 |
Protein Name
|
rep protein |
Coding Region
|
ATGGCTCCGAATAACAGATTTAGAGTTTCAGCCAGAAATTATTTTCTTACATACCCACACTGCTCTCTCACCAAAGAAGAAACACTTTCCCAATTAAGTAACCTAGTTTGTCCAACAAATAAAAAATTCATTAAAATCTGCAGAGAGCTACACGAAGATGGGAGCCCTCATCTCCACGTGCTTATTCAATTCGAGGGGAAATACGTCTGCACGAATAAACGATTCTTCGACCTTGTATCCCCAACCCGGTCAACACATTTCCATCCGAACATACAGGGAGCTAAATCAAGCTCCGATGTCAAGTCCTATATCGACAAGGACGGAGACACACTGGAATGGGGAGAATTCCAGATCGACGGAAGGAGTGCTAGAGGAGGCCAACAGGATCTTAACGATCTTGGTGCAGAGGTCTGGAACGCAACATCCGTAAATGCTGCCAAGCAATTAGTAAAGGAGAAGCAACCGTGGACATATCTATTACAACGGCACAACATAGTGGCAAATATCGAAAAAGAATTCGAGAAACCACCAGAACCGTTTGTGTGTCCATTTCCCACGACAGCATTTGACAATGTCCCGACCATGATGAAGGTATGGGCTCAAGAATTTGTGACAAATTCCGCTGCGCGGCCTCTAAGGCCCAAAGGCATTGTCATTGAAGGTGAAAGTCGAACCGGGAAAACGTTGTGGGCCAGGTCATTAGGGCCACATAATTACTTATGTGGACATTTAGACTTAAACCCTAATGTGTTCTCTAACGACGCATGGTATAACGTAATAGATGACGTCGACCCGCACTATCTAAAGCACTATAAAGAATTCATGGGGTCCCAAACAAACTGGCAAAGCAACAGAAAGTACGGAAAGCCGGTTCAAATTAAAGGTGGGATACCCACTATCTTCCTCTGCAATCCAGGTCCAACCTCTTCATATACAGAGTTTTTAGAAGAGGAAAAGAACGCAAAGCTCAAGAGGTGGTCTAATTACAATGCGATCTTCATCACCCTCAACGAGCCATTGTACTCTACCGAATATCAAGGTCCAGCACCGAGAGGCGAAGAAGAAGACCATCAGGAGACGGAGGATTGA |
Protein Sequence
|
MAPNNRFRVSARNYFLTYPHCSLTKEETLSQLSNLVCPTNKKFIKICRELHEDGSPHLHVLIQFEGKYVCTNKRFFDLVSPTRSTHFHPNIQGAKSSSDVKSYIDKDGDTLEWGEFQIDGRSARGGQQDLNDLGAEVWNATSVNAAKQLVKEKQPWTYLLQRHNIVANIEKEFEKPPEPFVCPFPTTAFDNVPTMMKVWAQEFVTNSAARPLRPKGIVIEGESRTGKTLWARSLGPHNYLCGHLDLNPNVFSNDAWYNVIDDVDPHYLKHYKEFMGSQTNWQSNRKYGKPVQIKGGIPTIFLCNPGPTSSYTEFLEEEKNAKLKRWSNYNAIFITLNEPLYSTEYQGPAPRGEEEDHQETED |
NCBI Accession
|
YP_001285765.1
|
Location
|
2201-2473 |
Gene Name
|
AC4 |
Protein Name
|
AC4 protein |
Coding Region
|
ATGGGAGCCCTCATCTCCACGTGCTTATTCAATTCGAGGGGAAATACGTCTGCACGAATAAACGATTCTTCGACCTTGTATCCCCAACCCGGTCAACACATTTCCATCCGAACATACAGGGAGCTAAATCAAGCTCCGATGTCAAGTCCTATATCGACAAGGACGGAGACACACTGGAATGGGGAGAATTCCAGATCGACGGAAGGAGTGCTAGAGGAGGCCAACAGGATCTTAACGATCTTGGTGCAGAGGTCTGGAACGCAACATCCGTAA |
Protein Sequence
|
MGALISTCLFNSRGNTSARINDSSTLYPQPGQHISIRTYRELNQAPMSSPISTRTETHWNGENSRSTEGVLEEANRILTILVQRSGTQHP |