Sida yellow vein Vietnam virus
Basic Information
| Genus |
Begomovirus
|
| NCBI Assembly |
GCF_000871685.1 |
| Isolate |
Viet Nam: Hanoi |
| Release date |
2015/2/13 |
| Submitter |
Ha,C., Coombs,S., Revill,P., Harding,R., Vu,M., Dale,J., Ha,C.V., Revill,P.A., Harding,R.M., Vu,M.T., Dale,J.L. |
| Host |
|
| Vector |
|
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGCGATTTTTTAGGGTGGTCCCCGCACGCGCTTTTGTCTTCCAATCAAAACGCTCCCTCAAAGCTAGTTTAAAAAAAACCCGCTATAAATACTTAGGGACTAAGTTATGAAGGAAATAAAATGTGGGATCCACTGTTGAACGAGTTTCCAGAAACCGTTCACGGTCTACGGTGTATGCTTGCGGTGAAATACTGTCATCTATTGGAGCAGACGTACGCGCCGGATACGGTGGGTTACGATCTTGTCAGAGACTTGATATCCGTCATACGAGCTCGTGACTATGTCGAAGCGACCCGCCGATATAGTCATTTCAACGCCCGCATCCAAGGTACGTCGACGGCTGAACTTCGACAGCCCAGGCATGAGCCGTGCTGCTGCCCCCACTGTCCTCGTCACAAATCGAAAGCGATCGTGGACTTACAGGCCCATGAATCGCAAACCCAGAATGTACAGGATGTACAGAAGCCCTGATGTTCCTCGTGGATGTGAAGGCCCGTGTAAGGTCCAGTCGTATGAAGCCCGTCATGATATAGCCCATGTAGGTAAGGTATTGTGTGTGTCTGATGTCACGCGTGGTAATGGGTTGACCCATCGAGTTGGTAAGAGGTTTTGTGTTAAGTCCGTGTACGTGTTGGGTAAGGTCTGGATGGATGAAAACATCAAGAAGAAAAATCACACTAACACTGTTATGTTTTTTTTAGTTCGTGATCGGAGACCGTTTGGGACTCCTCAGGATTTCGGTCAGGTGTTTAATATGTATGATAATGAGCCTAGTACGGCAACTGTGAAGAACGATAATAGGGATCGTTTCCAGGTATTGCGTCGATTTCAGGCAACGGTCACTGGTGGAGAGCACGCGTGTAAGGAGCAAGCCCTTGTTAGGAAGTTTATGAAAATTAACAATCATGTAACCTATAATCATCAGGAGGCAGCGAAGTATGATAACCATACTGAGAATGCGTTGTTATTGTATATGGCATGTACTCATGCTAGTAATCCAGTGTATGCTACGTTGAAAATCAGGATCTACTTCTATGATTCTGTTCAGAATTAATAAAGATTGAATTTTATTATATATGAAAAATGAGCCTCAATTGTGCCCTCGAGTTTATCGTACAGTACATGATTCATTGCCCTAATTACATTGTTAATGCTAATTACTCCTAAATTGTTCAAATACTTCATGCATTGATACTTAAATACTCTTAAGAAACGCCAAGTCTGAGGACGTAAACGAGTCCAGATTTGGCAGATCAGAAAACACTGGTGTATCCCCAACGCTTTCCGCAGGTTGTAGTTGAACTGGACTTGGACTGTTATTACGTCGTGTTTCGTCGAAAACGGCCTCTCGTCGTGCTGGGTGATCTTGAAATATAGGGGATTGTTGACCGTCCAGATATAGGCGCCATTCTCTGCCTGAGTTGCAGTGATGGGTTCCCCTGTGCGAAAATCCATGACTTGCGCAATTGAGTCCAAAATAATAAGAGCAACCGCAGGGAAGATCAACGCGACGCCTCCGAATGGGCCTCTTCTTCGCTGTCCGGTGTTGGACTTTGATGGGTACTTGAGTACAATGGCTCCGTGAGGGTGAAGAATTCTGCATTCTTTAATGCCCAGTCTCTGATTGCTGAATTCTTTTCCTCGTCCAAGTACTCTTTATACGATGAAGTTGGTCCTGGATTGCAAAGGAAGATTGTCGGGATACCTCCTTTAATTTGAATTGGTTTCCCGTACTTCGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCCTTGAAATGTTTCAGGTAGTGGGGGTCGACGTCATCGATTACGTTGTACCACGCATCATTGCTGTAGACCTTTGGGCTTAGGTCCAGATGTCCACACAGATAGTTGTGTGGGCCTAGAGATCGTGCCCACATCGTCTTCCCGGTTCTACTCTCACCCTCTATGACTATACTGATCGGTCGCCAAGGCCGCGCAGCGGCATCCCTCACGTTCTCTGACACCCAGCATTCAAGTTCTTCTGGAACTTGGTCGAAAGAAGAAGAAAGAAATGGACAAACAAAAACCTCTATAGGAGGTGCAAAAATCCTATCTAAATTAGCATTTAAATTATGAAACTGTAAAACATAATCTTTGGGAGCTAATTCCCTAATTATATTAAGAGCCTCTGACTTACTGCCTGTGTTAAGTGCTGCGGCGTAAGCGTCATTGGCTGATTGTTGGCCCCCTCTTGCAGATCGTCCGTCGATCTGAAACTCGCCCCACTCGAGGGTGTCTCCGTCCTTATCGATGTAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGTATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGATACCAGGTCGAAGAATCTGTTATTCGTGCAGACGTATTTTCCCTCGAACTGGATAAGCACGTGGAGATGAGGGCTCCCATCTTCGTGAAGTTCTCTGCAGATCTTGATGTATTTTTTATTTGTGGGGGTGTTTAGGTTTTGTAGTTGGGAAAGTGCCTCCTCTTTGGTGAGAGAGCACTGTGGATAAGTGAGGAAATAATTTTTAGCAGATAACCTAAAACGACGCGGAGGAGGCATATTGCGCGTCGTTTTGTATCGGTGACAATCAACTCTGTGGAATGAATTGGTGACTGGTGTACAATATATAGTTGTCACCAAATGGCATTCTCGTAAATCCTCATAGAAATTCAAAATTCGAATTGGGAAAGCGGCCATCCGTATAATATT
Gene Information
|
NCBI Accession
|
YP_001285736.1
|
|
Location
|
133-483 |
|
Gene Name
|
AV2 |
|
Protein Name
|
AV2 protein |
|
Coding Region
|
ATGTGGGATCCACTGTTGAACGAGTTTCCAGAAACCGTTCACGGTCTACGGTGTATGCTTGCGGTGAAATACTGTCATCTATTGGAGCAGACGTACGCGCCGGATACGGTGGGTTACGATCTTGTCAGAGACTTGATATCCGTCATACGAGCTCGTGACTATGTCGAAGCGACCCGCCGATATAGTCATTTCAACGCCCGCATCCAAGGTACGTCGACGGCTGAACTTCGACAGCCCAGGCATGAGCCGTGCTGCTGCCCCCACTGTCCTCGTCACAAATCGAAAGCGATCGTGGACTTACAGGCCCATGAATCGCAAACCCAGAATGTACAGGATGTACAGAAGCCCTGA |
|
Protein Sequence
|
MWDPLLNEFPETVHGLRCMLAVKYCHLLEQTYAPDTVGYDLVRDLISVIRARDYVEATRRYSHFNARIQGTSTAELRQPRHEPCCCPHCPRHKSKAIVDLQAHESQTQNVQDVQKP |
|
NCBI Accession
|
YP_001285737.1
|
|
Location
|
293-1066 |
|
Gene Name
|
AV1 |
|
Protein Name
|
CP protein |
|
Coding Region
|
ATGTCGAAGCGACCCGCCGATATAGTCATTTCAACGCCCGCATCCAAGGTACGTCGACGGCTGAACTTCGACAGCCCAGGCATGAGCCGTGCTGCTGCCCCCACTGTCCTCGTCACAAATCGAAAGCGATCGTGGACTTACAGGCCCATGAATCGCAAACCCAGAATGTACAGGATGTACAGAAGCCCTGATGTTCCTCGTGGATGTGAAGGCCCGTGTAAGGTCCAGTCGTATGAAGCCCGTCATGATATAGCCCATGTAGGTAAGGTATTGTGTGTGTCTGATGTCACGCGTGGTAATGGGTTGACCCATCGAGTTGGTAAGAGGTTTTGTGTTAAGTCCGTGTACGTGTTGGGTAAGGTCTGGATGGATGAAAACATCAAGAAGAAAAATCACACTAACACTGTTATGTTTTTTTTAGTTCGTGATCGGAGACCGTTTGGGACTCCTCAGGATTTCGGTCAGGTGTTTAATATGTATGATAATGAGCCTAGTACGGCAACTGTGAAGAACGATAATAGGGATCGTTTCCAGGTATTGCGTCGATTTCAGGCAACGGTCACTGGTGGAGAGCACGCGTGTAAGGAGCAAGCCCTTGTTAGGAAGTTTATGAAAATTAACAATCATGTAACCTATAATCATCAGGAGGCAGCGAAGTATGATAACCATACTGAGAATGCGTTGTTATTGTATATGGCATGTACTCATGCTAGTAATCCAGTGTATGCTACGTTGAAAATCAGGATCTACTTCTATGATTCTGTTCAGAATTAA |
|
Protein Sequence
|
MSKRPADIVISTPASKVRRRLNFDSPGMSRAAAPTVLVTNRKRSWTYRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSYEARHDIAHVGKVLCVSDVTRGNGLTHRVGKRFCVKSVYVLGKVWMDENIKKKNHTNTVMFFLVRDRRPFGTPQDFGQVFNMYDNEPSTATVKNDNRDRFQVLRRFQATVTGGEHACKEQALVRKFMKINNHVTYNHQEAAKYDNHTENALLLYMACTHASNPVYATLKIRIYFYDSVQN |
|
NCBI Accession
|
YP_001285738.1
|
|
Location
|
1063-1467 |
|
Gene Name
|
AC3 |
|
Protein Name
|
REn protein |
|
Coding Region
|
ATGGATTTTCGCACAGGGGAACCCATCACTGCAACTCAGGCAGAGAATGGCGCCTATATCTGGACGGTCAACAATCCCCTATATTTCAAGATCACCCAGCACGACGAGAGGCCGTTTTCGACGAAACACGACGTAATAACAGTCCAAGTCCAGTTCAACTACAACCTGCGGAAAGCGTTGGGGATACACCAGTGTTTTCTGATCTGCCAAATCTGGACTCGTTTACGTCCTCAGACTTGGCGTTTCTTAAGAGTATTTAAGTATCAATGCATGAAGTATTTGAACAATTTAGGAGTAATTAGCATTAACAATGTAATTAGGGCAATGAATCATGTACTGTACGATAAACTCGAGGGCACAATTGAGGCTCATTTTTCATATATAATAAAATTCAATCTTTATTAA |
|
Protein Sequence
|
MDFRTGEPITATQAENGAYIWTVNNPLYFKITQHDERPFSTKHDVITVQVQFNYNLRKALGIHQCFLICQIWTRLRPQTWRFLRVFKYQCMKYLNNLGVISINNVIRAMNHVLYDKLEGTIEAHFSYIIKFNLY |
|
NCBI Accession
|
YP_001285739.1
|
|
Location
|
1208-1615 |
|
Gene Name
|
AC2 |
|
Protein Name
|
TrAP protein |
|
Coding Region
|
ATGCAGAATTCTTCACCCTCACGGAGCCATTGTACTCAAGTACCCATCAAAGTCCAACACCGGACAGCGAAGAAGAGGCCCATTCGGAGGCGTCGCGTTGATCTTCCCTGCGGTTGCTCTTATTATTTTGGACTCAATTGCGCAAGTCATGGATTTTCGCACAGGGGAACCCATCACTGCAACTCAGGCAGAGAATGGCGCCTATATCTGGACGGTCAACAATCCCCTATATTTCAAGATCACCCAGCACGACGAGAGGCCGTTTTCGACGAAACACGACGTAATAACAGTCCAAGTCCAGTTCAACTACAACCTGCGGAAAGCGTTGGGGATACACCAGTGTTTTCTGATCTGCCAAATCTGGACTCGTTTACGTCCTCAGACTTGGCGTTTCTTAAGAGTATTTAA |
|
Protein Sequence
|
MQNSSPSRSHCTQVPIKVQHRTAKKRPIRRRRVDLPCGCSYYFGLNCASHGFSHRGTHHCNSGREWRLYLDGQQSPIFQDHPARREAVFDETRRNNSPSPVQLQPAESVGDTPVFSDLPNLDSFTSSDLAFLKSI |
|
NCBI Accession
|
YP_001285740.1
|
|
Location
|
1515-2603 |
|
Gene Name
|
AC1 |
|
Protein Name
|
rep protein |
|
Coding Region
|
ATGCCTCCTCCGCGTCGTTTTAGGTTATCTGCTAAAAATTATTTCCTCACTTATCCACAGTGCTCTCTCACCAAAGAGGAGGCACTTTCCCAACTACAAAACCTAAACACCCCCACAAATAAAAAATACATCAAGATCTGCAGAGAACTTCACGAAGATGGGAGCCCTCATCTCCACGTGCTTATCCAGTTCGAGGGAAAATACGTCTGCACGAATAACAGATTCTTCGACCTGGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATACAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTACATCGATAAGGACGGAGACACCCTCGAGTGGGGCGAGTTTCAGATCGACGGACGATCTGCAAGAGGGGGCCAACAATCAGCCAATGACGCTTACGCCGCAGCACTTAACACAGGCAGTAAGTCAGAGGCTCTTAATATAATTAGGGAATTAGCTCCCAAAGATTATGTTTTACAGTTTCATAATTTAAATGCTAATTTAGATAGGATTTTTGCACCTCCTATAGAGGTTTTTGTTTGTCCATTTCTTTCTTCTTCTTTCGACCAAGTTCCAGAAGAACTTGAATGCTGGGTGTCAGAGAACGTGAGGGATGCCGCTGCGCGGCCTTGGCGACCGATCAGTATAGTCATAGAGGGTGAGAGTAGAACCGGGAAGACGATGTGGGCACGATCTCTAGGCCCACACAACTATCTGTGTGGACATCTGGACCTAAGCCCAAAGGTCTACAGCAATGATGCGTGGTACAACGTAATCGATGACGTCGACCCCCACTACCTGAAACATTTCAAGGAATTCATGGGGGCCCAAAGGGACTGGCAAAGCAACACGAAGTACGGGAAACCAATTCAAATTAAAGGAGGTATCCCGACAATCTTCCTTTGCAATCCAGGACCAACTTCATCGTATAAAGAGTACTTGGACGAGGAAAAGAATTCAGCAATCAGAGACTGGGCATTAAAGAATGCAGAATTCTTCACCCTCACGGAGCCATTGTACTCAAGTACCCATCAAAGTCCAACACCGGACAGCGAAGAAGAGGCCCATTCGGAGGCGTCGCGTTGA |
|
Protein Sequence
|
MPPPRRFRLSAKNYFLTYPQCSLTKEEALSQLQNLNTPTNKKYIKICRELHEDGSPHLHVLIQFEGKYVCTNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYIDKDGDTLEWGEFQIDGRSARGGQQSANDAYAAALNTGSKSEALNIIRELAPKDYVLQFHNLNANLDRIFAPPIEVFVCPFLSSSFDQVPEELECWVSENVRDAAARPWRPISIVIEGESRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLDEEKNSAIRDWALKNAEFFTLTEPLYSSTHQSPTPDSEEEAHSEASR |
|
NCBI Accession
|
YP_001285741.1
|
|
Location
|
2156-2446 |
|
Gene Name
|
AC4 |
|
Protein Name
|
AC4 protein |
|
Coding Region
|
ATGGGAGCCCTCATCTCCACGTGCTTATCCAGTTCGAGGGAAAATACGTCTGCACGAATAACAGATTCTTCGACCTGGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATACAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTACATCGATAAGGACGGAGACACCCTCGAGTGGGGCGAGTTTCAGATCGACGGACGATCTGCAAGAGGGGGCCAACAATCAGCCAATGACGCTTACGCCGCAGCACTTAACACAGGCAGTAAGTCAGAGGCTCTTAATATAA |
|
Protein Sequence
|
MGALISTCLSSSRENTSARITDSSTWYPQPGQHISIRTYRELNPAPTSSPTSIRTETPSSGASFRSTDDLQEGANNQPMTLTPQHLTQAVSQRLLI |