Sida yellow mosaic Yucatan virus


Basic Information

Genus Begomovirus
NCBI Assembly GCF_000867925.1
Isolate Mexico: Yucatan
Release date 2015/2/13
Submitter Hernandez-Zepeda,C., Idris,A.M., Carnevali,G., Brown,J.K., Moreno-Valenzuela,O.A.
Host
Vector
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_008779
ACCGGATGGCCGCGCTTTGGGGTATGCTCCCCCCCCCCCGCGCGCGATTTTTAATTTGAATTAAAGATGGTCCAGACGCTCTCGTCCAATCATGTCGCGTCTGACAAGCTTATATATTTTTGAACAACTTGGGCCCTAAGTTGTTGGGTGTCCGTTATAAATTTAAAATTATTTGGCCCACTGCCTTTAACTCAAAATGCCTAAGCGCGATCTCCCATGGCGCGCGATAGCGGGAACCTCAAAGGTTAGCCGCAATGCTAACTATTCTCCTCGTGCAGGAAGTGGGCCAAGAAACAAGGCCTCTGAATGGGTGAACAGGCCCATGTACAGGAAGCCCAGGATCTACCGGATGATGAGGACCCCCGATGTGCCCAGAGGATGTGAGGGGCCTTGTAAGGTCCAGTCGTATGAACAGCGCCACGACATTTCACATGTCGGCAAGGTCATGTGCATATCTGACGTGACACGTGGTAATGGTATCACCCACCGTGTGGGTAAGCGTTTCTGTGTGAAATCTGTGTATATCCTTGGTAAGATCTGGATGGACGAGAACATCAAGCTCAAGAACCACACGAACAGTGTCATGTTCTGGTTGGTCAGGGATCGTAGACCGTATGGCACGCCTATGGATTTTGGACAAGTGTTCAACATGTTCGACAACGAGCCCAGCACTGCTACGGTGAAGAACGACCTACGCGATCGTTACCAAGTCATGCACAAGTTTTATGGTAAGGTGACAGGTGGACAGTATGCCAGCAACGAGCAGGCTATAGTCAAGAGATTCTGGAAGGTCAACAATCATGTGGTCTACAACCACCAGGAGGCTGGCAAGTATGAGAATCACACGGAGAACGCGCTGTTATTGTATATGGCATGTACTCATGCATCTAACCCTGTGTATGCAACGCTTAAGATTCGAATCTATTTCTACGATTCGATCACGAATTAATAAAATTTGAATTTTATTGAATGATTTTCCAGTACATAATTTACATACGATCTGTCTGTTGCGAATCGAACAGCTCTGATTACATTGTTAATGGAAATAACGCCTAACTGATCTAAGTACATGTTAACTAATTGTTTAAACCTAGCTAAATAAGTCGACCCAGAAGCTGTCATCGATGTCGTCCAAACTTGGAAGTTCAGGTAAGCTTTGTGGAGATGCAACGCTCTCCTCAGGTTGTGGTTGAACCGTATTTGTACGCTGTACACCCTGCTCCTCGTGTACAGCGGGTCCTCTACTCGGAATATCTTGAAATAAAGGGGATTTTCTATCTCCCAGATATAGACGCCATTCTCTGCCTGACGTGCAGTGATGGGTTCCCCTGTGCGTGAATCCATGCCCGGTACAGCCTATGTGGAAGTATATGGAGCAACCGCACTCCAGATCAATCCGCCGTCTCCTGATGGCCCTCCTCTTGGCCTGTCTGTGTGCTGTCTTGATAGAGGGCGGATGTGAGGGTGATGAAGATCGCATTCTTGATCGTCCAGTTTCTGAGTGCAGCGTTTTCCTCTTTGTCGAGGAAATCTTTATAGCTTGCACCCTCACCTGGATTGCAAAGCACGATTGCTGGGATACCTCCTTTTATTTGAACTGGCTTGCCGTACTTGCAATTTGACTGCCAGTCTTTCTGGGCCCCCAGCAATTCTTTCCAGTGCTTTAGCTTTAGATAGTGCGGTGCGACGTCATCAATGACGTTATACTCCACGTCATTTGAGTATACCCGGTGATTGAAGTCCAGATGTCCACTGAGGTAATTATGTGGGCCTAACGCACGAGCCCACATCGTCTTCCCTGTCCTTGAATCACCTTCAACTATGAGACTTACTGGTCTCTCAGGCCGCGCAGCGGCACCTCTCCCAAAATAATCATCTGCCCACTCTTGCATCTCTTCTGGAACGGATGTGAATGAGGAGAGGGGAAACGGCGGGACCCACGGTTCCGGATTCTTCTGAAATATTTTGGTTGCATTAGCAACCAGGTTGTGATGTTGAAGGAAGAAATGTTGCGGTTGTTCTTCCTTTATGATTTGCAGAGCTGCCTCTGCGGAACCGGCGTTCAACGCCTTGGCATATGAATCGTTAGCTGTCTGCTGACCTCCTCGAGCAGATCTGCCGTCGATCTGGAATTCTCCCCATTCGATGGTGTCTCCGTCTTTCTCGACGTAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGTATGTTCGGATGGAAATGTATTGACCTGGTTGGGGACACCAGATCGAAGAATCTGTTATTCGTGCACTGGTACTTCCCTTCGAACTGGAGGAGAATGTGGAGGTGAGGCTCCCCATTTTCGTGTAATTCTCTGCAGATCTTGATGAACTTCTTGTTCACCGGAGTGTTTAGGTTTTGTAATTGGGAAAGTGCTTCTTCTTTAGTAAGAGAGCACTTAGGATATGTGAGGAAATAGTTTTTCGCTGAGACTTTGGAGCGCTTAACCGGTGGCATTTTTGTAATAAGAAGAGTGTACCCCGGATGAGCTCTCAAACTTCTGTGTTATGAATTGGGGTAATGGGTTACAATATATACTATAACCCTCATTTACGGATTTGCAACACGTGGCGGCCATCCGCTATAATATT

NC_008780
ACCGGATGGCCGCGCTTTGGGGTACGCTCCCCCCCCTGGTGACGCGCGCTCCCCTGGTGTGGTGTCTTGCACGCGCCCTCCTATTGGTGCTGGTCCTTCACGCTCCGGCTTTTGAGTGGCCTTTAATTTAAATTAAAGGATGATGCTTTGTCGCGCGAACTGCTTTTATGAGTTGAATTATTGTCGCGCGATGTCTGACTAGGGCCCATTGTACTATGTGAAGGACGTGGCTATTTATTGACCATGTCGCTGCGTTTATTTGTGAATAATGTTGGACCAATTATTTATATAATGTAATGGATATGTGTGTCATGTAGAACATACGCAGCGTCTAAACACGTTTACTTTTGTATTTATATTTGTGTTTTATCCTTTTTTTACATTGTGATTATGTATCATGTGAGGGGTAAACGTGTTGGTTACTTCACTAATCGACGTTTTAACTCACGTAATAATGTGTTTAACCGTTCAATCTATGGGAAACGACATGACGGGAAACGTCGAGGAGGTCGATCTGTCAAGCCCACTGCTGAGCCCAATATGTCATCCCAAACCATACATGAGAATCAGTATGGCACTGACTTTGTCATGGCCCATAATTCAGCTATCTCGACGTTCATCAGTTACCCAGACTTGGGCAAGATTGAACCGGGTCGAAGCAGATCCTATATCAAGTTGAAACGACTCCGTTTCAAAGGGACTGTGAAGATTGAACGTGTTCAATCGGATGTGAACATGGACGGTTCTGTCCCGAAAATAGAAGGAGTATTCTCCCTCGTTGTTGTTGTGGATCGGAAACCCCACTTGGGTCCAAGTGGTTTACTGCATACATTCGACGAGCTGTTCGGAGCAATCATTCACAGTCATGGCAATCTCAGCATTGTCCCTTCACTGAAAGACCGTTATTATATTCGCCACGTGTTCAAACGTGTATTGTCATTGGAGAATGACACGCTAATGGTCGATGTGGAAGGATCTACAGCTTTATCTAACAGGCGTTTTAATTGTTGGTCCACTTTCAAGGACGTTGATCGTGATTCATGCAAGGGTGTTTATGATAATATAAGCAAGAACGCCCTGTTAATTTATTATTGCTGGGTGTCGGATACGCCCTCGAAGGCATCCAATTATGTATCTTTTGATCTTGATTATGTTGGTTAATGTAATAAATATTATTTATCCAAAATTGATTATCTTATTACGAGAAATCAAAATATATATTTATTTCAATGATTTGGCCTGAGTAGCCTGACAGTTATTATTAATACATTCTTGGACCGTTGTCCGAACTAGCTCGTTCAACTGGCCCATTGACATTGTGATGTTGGACTCCGCTCTCTGGGTTCCCACGATGGAAGCAGACTCTCCTGGATCTAGAACGCTCGTCCCGAGCCTGTTCAGGTGTCTGTATGGGTGGAGCTCGTTCTCCACCTCCGAGTCCGCGTCTGATTGGCACGTACCTATGTTACTCCTGGAAGCCCACGACTCACCAGGCCTTATTTCAATTGGGCCTCTAAGCCCAACTCTGGACATGGACGCGCATCTGATGGGCTTCCTCTCCCATTTCCCGTAGCCCACATGGGAAAAGTCCACATCTTTGTCTGTGAACTGTTTGGACAGGATCTTCACTGTTGGTGCCCGGAAGGGGATATCCACGGAGTGTTTTGCGGTGGACAATTTCAGTTTCCCTTTGAACTTGGCGAAGTGGGTCCTCTGATGAACATTCGTATCGCATACGCGATAGTACAACTTCCATGGAATTGGGTCCTTCAGGGAGAAGAACGAAGCCGAGAAGTAGTGGAGATCTATGTTACACCTGATCGGAAAAGTCCACGTGGCTTGTTGTGATTCGTTGTCCGTCATCCTTTTGTCGTGGATCTCCACTATTACCGACCCCGTCGCGTTGATCGGCACCTGTTGTCTGTATTCTATGACGCAGTGATCTATTTTCATGCAGCTACGACTGAGTCTCGCCGTAAACTGCGACGCCGTCGAAGGAAATTGCAGAATTATCTCAGTTAAGTCATGAGAAAGCTGATACTCGTCTCGGTGAGATTCTATGTAGTTGAAAGCGTTAGGAGGATTGACTAACTGAGAATCCATCTGAAGAAGAAAGGCCGCGCAGCGGAACCGATTGTTGAAGTTGAATCGGGAAGAAGATGAACAACTGATGAACAAGATGATCAACTCTGGAAAGCCCTCCTTTGATCTCGAAGAAGGTAAACGTTTAACTTTTTATATGGGTTTAATAATATCTGATGATTTCTGTGTTTGAGAATGCTCGACTATGATCTTCTGTTAATAATTTATTTTTTTTTTGAGAAAGAAAGGAGTGTTGATGAAGAGTTTAAGATAAATCAGGAAATGGAGGAGTTTGTCTATTAACCCAGACTTGCTGGGTTTCTGGTATTTAAATTGGTAAAGTGTTCATCTGACGCTCAACCGATGGCATTTTTGTAATAAGAAGTGTGTACCCCGGATGAGCTCTCAAACTTCTGTGTTATGAATTGGGGTAATGGGTTACAATATATACTATAACCCTCATTTACGGATTTGCAACACGTGGCGGCCATCCGCTATAATATT

Gene Information

NCBI Accession YP_980243.1
Location 197-949
Gene Name AV1
Protein Name coat protein
Coding Region ATGCCTAAGCGCGATCTCCCATGGCGCGCGATAGCGGGAACCTCAAAGGTTAGCCGCAATGCTAACTATTCTCCTCGTGCAGGAAGTGGGCCAAGAAACAAGGCCTCTGAATGGGTGAACAGGCCCATGTACAGGAAGCCCAGGATCTACCGGATGATGAGGACCCCCGATGTGCCCAGAGGATGTGAGGGGCCTTGTAAGGTCCAGTCGTATGAACAGCGCCACGACATTTCACATGTCGGCAAGGTCATGTGCATATCTGACGTGACACGTGGTAATGGTATCACCCACCGTGTGGGTAAGCGTTTCTGTGTGAAATCTGTGTATATCCTTGGTAAGATCTGGATGGACGAGAACATCAAGCTCAAGAACCACACGAACAGTGTCATGTTCTGGTTGGTCAGGGATCGTAGACCGTATGGCACGCCTATGGATTTTGGACAAGTGTTCAACATGTTCGACAACGAGCCCAGCACTGCTACGGTGAAGAACGACCTACGCGATCGTTACCAAGTCATGCACAAGTTTTATGGTAAGGTGACAGGTGGACAGTATGCCAGCAACGAGCAGGCTATAGTCAAGAGATTCTGGAAGGTCAACAATCATGTGGTCTACAACCACCAGGAGGCTGGCAAGTATGAGAATCACACGGAGAACGCGCTGTTATTGTATATGGCATGTACTCATGCATCTAACCCTGTGTATGCAACGCTTAAGATTCGAATCTATTTCTACGATTCGATCACGAATTAA
Protein Sequence MPKRDLPWRAIAGTSKVSRNANYSPRAGSGPRNKASEWVNRPMYRKPRIYRMMRTPDVPRGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGITHRVGKRFCVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATVKNDLRDRYQVMHKFYGKVTGGQYASNEQAIVKRFWKVNNHVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSITN

NCBI Accession YP_980244.1
Location 946-1344
Gene Name AC3
Protein Name replication enhancer protein
Coding Region ATGGATTCACGCACAGGGGAACCCATCACTGCACGTCAGGCAGAGAATGGCGTCTATATCTGGGAGATAGAAAATCCCCTTTATTTCAAGATATTCCGAGTAGAGGACCCGCTGTACACGAGGAGCAGGGTGTACAGCGTACAAATACGGTTCAACCACAACCTGAGGAGAGCGTTGCATCTCCACAAAGCTTACCTGAACTTCCAAGTTTGGACGACATCGATGACAGCTTCTGGGTCGACTTATTTAGCTAGGTTTAAACAATTAGTTAACATGTACTTAGATCAGTTAGGCGTTATTTCCATTAACAATGTAATCAGAGCTGTTCGATTCGCAACAGACAGATCGTATGTAAATTATGTACTGGAAAATCATTCAATAAAATTCAAATTTTATTAA
Protein Sequence MDSRTGEPITARQAENGVYIWEIENPLYFKIFRVEDPLYTRSRVYSVQIRFNHNLRRALHLHKAYLNFQVWTTSMTASGSTYLARFKQLVNMYLDQLGVISINNVIRAVRFATDRSYVNYVLENHSIKFKFY

NCBI Accession YP_980245.1
Location 1091-1480
Gene Name AC2
Protein Name transactivator protein
Coding Region ATGCGATCTTCATCACCCTCACATCCGCCCTCTATCAAGACAGCACACAGACAGGCCAAGAGGAGGGCCATCAGGAGACGGCGGATTGATCTGGAGTGCGGTTGCTCCATATACTTCCACATAGGCTGTACCGGGCATGGATTCACGCACAGGGGAACCCATCACTGCACGTCAGGCAGAGAATGGCGTCTATATCTGGGAGATAGAAAATCCCCTTTATTTCAAGATATTCCGAGTAGAGGACCCGCTGTACACGAGGAGCAGGGTGTACAGCGTACAAATACGGTTCAACCACAACCTGAGGAGAGCGTTGCATCTCCACAAAGCTTACCTGAACTTCCAAGTTTGGACGACATCGATGACAGCTTCTGGGTCGACTTATTTAGCTAG
Protein Sequence MRSSSPSHPPSIKTAHRQAKRRAIRRRRIDLECGCSIYFHIGCTGHGFTHRGTHHCTSGREWRLYLGDRKSPLFQDIPSRGPAVHEEQGVQRTNTVQPQPEESVASPQSLPELPSLDDIDDSFWVDLFS

NCBI Accession YP_980246.1
Location 1392-2477
Gene Name AC1
Protein Name REP protein
Coding Region ATGCCACCGGTTAAGCGCTCCAAAGTCTCAGCGAAAAACTATTTCCTCACATATCCTAAGTGCTCTCTTACTAAAGAAGAAGCACTTTCCCAATTACAAAACCTAAACACTCCGGTGAACAAGAAGTTCATCAAGATCTGCAGAGAATTACACGAAAATGGGGAGCCTCACCTCCACATTCTCCTCCAGTTCGAAGGGAAGTACCAGTGCACGAATAACAGATTCTTCGATCTGGTGTCCCCAACCAGGTCAATACATTTCCATCCGAACATACAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTACGTCGAGAAAGACGGAGACACCATCGAATGGGGAGAATTCCAGATCGACGGCAGATCTGCTCGAGGAGGTCAGCAGACAGCTAACGATTCATATGCCAAGGCGTTGAACGCCGGTTCCGCAGAGGCAGCTCTGCAAATCATAAAGGAAGAACAACCGCAACATTTCTTCCTTCAACATCACAACCTGGTTGCTAATGCAACCAAAATATTTCAGAAGAATCCGGAACCGTGGGTCCCGCCGTTTCCCCTCTCCTCATTCACATCCGTTCCAGAAGAGATGCAAGAGTGGGCAGATGATTATTTTGGGAGAGGTGCCGCTGCGCGGCCTGAGAGACCAGTAAGTCTCATAGTTGAAGGTGATTCAAGGACAGGGAAGACGATGTGGGCTCGTGCGTTAGGCCCACATAATTACCTCAGTGGACATCTGGACTTCAATCACCGGGTATACTCAAATGACGTGGAGTATAACGTCATTGATGACGTCGCACCGCACTATCTAAAGCTAAAGCACTGGAAAGAATTGCTGGGGGCCCAGAAAGACTGGCAGTCAAATTGCAAGTACGGCAAGCCAGTTCAAATAAAAGGAGGTATCCCAGCAATCGTGCTTTGCAATCCAGGTGAGGGTGCAAGCTATAAAGATTTCCTCGACAAAGAGGAAAACGCTGCACTCAGAAACTGGACGATCAAGAATGCGATCTTCATCACCCTCACATCCGCCCTCTATCAAGACAGCACACAGACAGGCCAAGAGGAGGGCCATCAGGAGACGGCGGATTGA
Protein Sequence MPPVKRSKVSAKNYFLTYPKCSLTKEEALSQLQNLNTPVNKKFIKICRELHENGEPHLHILLQFEGKYQCTNNRFFDLVSPTRSIHFHPNIQGAKSSSDVKSYVEKDGDTIEWGEFQIDGRSARGGQQTANDSYAKALNAGSAEAALQIIKEEQPQHFFLQHHNLVANATKIFQKNPEPWVPPFPLSSFTSVPEEMQEWADDYFGRGAAARPERPVSLIVEGDSRTGKTMWARALGPHNYLSGHLDFNHRVYSNDVEYNVIDDVAPHYLKLKHWKELLGAQKDWQSNCKYGKPVQIKGGIPAIVLCNPGEGASYKDFLDKEENAALRNWTIKNAIFITLTSALYQDSTQTGQEEGHQETAD

NCBI Accession YP_980247.1
Location 391-1161
Gene Name BV1
Protein Name BV1
Coding Region ATGTATCATGTGAGGGGTAAACGTGTTGGTTACTTCACTAATCGACGTTTTAACTCACGTAATAATGTGTTTAACCGTTCAATCTATGGGAAACGACATGACGGGAAACGTCGAGGAGGTCGATCTGTCAAGCCCACTGCTGAGCCCAATATGTCATCCCAAACCATACATGAGAATCAGTATGGCACTGACTTTGTCATGGCCCATAATTCAGCTATCTCGACGTTCATCAGTTACCCAGACTTGGGCAAGATTGAACCGGGTCGAAGCAGATCCTATATCAAGTTGAAACGACTCCGTTTCAAAGGGACTGTGAAGATTGAACGTGTTCAATCGGATGTGAACATGGACGGTTCTGTCCCGAAAATAGAAGGAGTATTCTCCCTCGTTGTTGTTGTGGATCGGAAACCCCACTTGGGTCCAAGTGGTTTACTGCATACATTCGACGAGCTGTTCGGAGCAATCATTCACAGTCATGGCAATCTCAGCATTGTCCCTTCACTGAAAGACCGTTATTATATTCGCCACGTGTTCAAACGTGTATTGTCATTGGAGAATGACACGCTAATGGTCGATGTGGAAGGATCTACAGCTTTATCTAACAGGCGTTTTAATTGTTGGTCCACTTTCAAGGACGTTGATCGTGATTCATGCAAGGGTGTTTATGATAATATAAGCAAGAACGCCCTGTTAATTTATTATTGCTGGGTGTCGGATACGCCCTCGAAGGCATCCAATTATGTATCTTTTGATCTTGATTATGTTGGTTAA
Protein Sequence MYHVRGKRVGYFTNRRFNSRNNVFNRSIYGKRHDGKRRGGRSVKPTAEPNMSSQTIHENQYGTDFVMAHNSAISTFISYPDLGKIEPGRSRSYIKLKRLRFKGTVKIERVQSDVNMDGSVPKIEGVFSLVVVVDRKPHLGPSGLLHTFDELFGAIIHSHGNLSIVPSLKDRYYIRHVFKRVLSLENDTLMVDVEGSTALSNRRFNCWSTFKDVDRDSCKGVYDNISKNALLIYYCWVSDTPSKASNYVSFDLDYVG

NCBI Accession YP_980248.1
Location 1222-2103
Gene Name BC1
Protein Name movement protein
Coding Region ATGGATTCTCAGTTAGTCAATCCTCCTAACGCTTTCAACTACATAGAATCTCACCGAGACGAGTATCAGCTTTCTCATGACTTAACTGAGATAATTCTGCAATTTCCTTCGACGGCGTCGCAGTTTACGGCGAGACTCAGTCGTAGCTGCATGAAAATAGATCACTGCGTCATAGAATACAGACAACAGGTGCCGATCAACGCGACGGGGTCGGTAATAGTGGAGATCCACGACAAAAGGATGACGGACAACGAATCACAACAAGCCACGTGGACTTTTCCGATCAGGTGTAACATAGATCTCCACTACTTCTCGGCTTCGTTCTTCTCCCTGAAGGACCCAATTCCATGGAAGTTGTACTATCGCGTATGCGATACGAATGTTCATCAGAGGACCCACTTCGCCAAGTTCAAAGGGAAACTGAAATTGTCCACCGCAAAACACTCCGTGGATATCCCCTTCCGGGCACCAACAGTGAAGATCCTGTCCAAACAGTTCACAGACAAAGATGTGGACTTTTCCCATGTGGGCTACGGGAAATGGGAGAGGAAGCCCATCAGATGCGCGTCCATGTCCAGAGTTGGGCTTAGAGGCCCAATTGAAATAAGGCCTGGTGAGTCGTGGGCTTCCAGGAGTAACATAGGTACGTGCCAATCAGACGCGGACTCGGAGGTGGAGAACGAGCTCCACCCATACAGACACCTGAACAGGCTCGGGACGAGCGTTCTAGATCCAGGAGAGTCTGCTTCCATCGTGGGAACCCAGAGAGCGGAGTCCAACATCACAATGTCAATGGGCCAGTTGAACGAGCTAGTTCGGACAACGGTCCAAGAATGTATTAATAATAACTGTCAGGCTACTCAGGCCAAATCATTGAAATAA
Protein Sequence MDSQLVNPPNAFNYIESHRDEYQLSHDLTEIILQFPSTASQFTARLSRSCMKIDHCVIEYRQQVPINATGSVIVEIHDKRMTDNESQQATWTFPIRCNIDLHYFSASFFSLKDPIPWKLYYRVCDTNVHQRTHFAKFKGKLKLSTAKHSVDIPFRAPTVKILSKQFTDKDVDFSHVGYGKWERKPIRCASMSRVGLRGPIEIRPGESWASRSNIGTCQSDADSEVENELHPYRHLNRLGTSVLDPGESASIVGTQRAESNITMSMGQLNELVRTTVQECINNNCQATQAKSLK