Sida yellow mosaic virus
Basic Information
Genus |
Begomovirus
|
NCBI Assembly |
GCF_000864865.1 |
Release date |
2015/2/13 |
Submitter |
Fontes,E.P.B., Fernandes,A.V., Mariano,A.C., Galvao,R.M., Zerbini,F.M. |
Vector |
|
Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGGCGCGATTTTCCCCCCCCTCACGTGGCGCTCTGGTGGCCGCTCGATCTCTCTCTCCCCCGCTCCCGAGGAGCCCCCCCTGCTCGCGCGATGTTCTCCTTTAATTCAAATTAAAGGATTTAACTTTTGTCTGACCAATTATAGTGCGCCTGAGGAGCTTAGATAACTGTGTTAATACTTGGTCCCTAAGTTTTATGGCCCCTATAAAACTAAAGCAAGCATGACGTCAGTCTTTAATTCGAAATGCCTAAGCGGGATCCCTCATGGCGCCAGATGGCGGGAACCTCAAAGGTAAGCCGCTCTTCCAATTTCTCTCCTCGTGGAGGTGGAGGCCCAAAACCCACTAGGGCCTTTGAATGGGTTAACAGGCCCATGTACAGGAAGCCCAGGATATATCGGACGATCAGAACGCCTGATGTTCCTAGAGGCTGTGAAGGGCCCTGTAAGGTCCAGTCCTACGAGCAACGTCACGATATTTCCCATGTTGGGAAGGTGATGTGTATATCTGATGTGACACGCGGTAACGGTATTACTCACCGTGTCGGTAAGCGTTTCTGTGTTAAGTCTGTGTTATATTTTAGGCAAGATATGGATGGACGAAAATATCAAGCTCAAGAACACACGAACAGTTGCATGTTCTGGTTGGTCCGGGACCGTAGACCGTATGGCACACCAATGGATTTCGGCCAGGTGTTCAACATGTTTGACAACGAGCCCAGTACTGCAACCGTGAAGAACGATCTTCGTGATCGTTTCCAGGTCATGCACAAGTTCTATGCCAAGGTCACGGGTGGACAGTATGCCAGCAATGAGCAGGCGCTGGTCAAGCGGTTTTGGAAGGTCAACAATCATGTGGTCTACAATCACCAGGAAGCTGGCAAGTACGAGAATCACACGGAGAACGCATTGCTACTTTATATGGCATGTACCCATGCCTCTAACCCTGTGTATGCAACGCTCAAGATTCGAATCTATTTCTACGATTCGATCACGAATTAATAAATTTTGAATTTTATTTCATGATTTTCCAGTACATATCTGACATATGATCTGTCAGTTGCAAAATAAACAGCTCTAAGTACATTATTAAGCGTAATAACGCCTAATTGGTCTAAATACATCATGACTAACTGTCTAAACCTAATCAAATAAGTCGTTCCAGAAGCTGTCAGAGATGTCGTCCAGACTTGGAAGTTCAGGAATGCCTTGTGGAGACCCAATGCTCTCCTGAGGTTGTGGTTGAACCGTATCTGTACGTGGTACACTCTGGTCGTCGTGTACAACAGGTCCTCTACGTGGTATATCTTGAAATACAGGGGATTTGTTATCTCCCCAGATATAGACGCCATTCTCTGCTTGAGGCACAGTGATGAGTTCCCTCGGTGCGTGAATCCCATCGTTGCTGCAGTTGATGTGGACGTATATGGAGCACCCGCACGCTAGATCAATCCTTCTACGGCGAGTTCCTCTCCTCTTCGCCGCTCTGTGTCGTGGTTTGATAGAGGGGGGAGTCGAGGAAGATGAATTTAGCATTGTGGAGTGTCCACGACTTTAGACCTGCATTCTCCTCTTTGTCGAGGAACTCTTTATAACTGACTCCCTCCCCAGGATTGCAGAGCACGATTGATGGGATTCCACCTTTAATTTGAACTGGCTTTCCGTACTTACAATTTGACTGCCAGTCTTTTTGAGCACCAATCAGCTCCTTCCAGTGCTTTAACTTTAGATATTGCGGAGTGACATCATCAATGACGTTATAATCCACTTCGTTTGAGTAAACCCTATTATTGAAGTCCAGATGTCCACTTAAGTAATTATGTGGGCTAATGCACGAGCCCACATCGTCTTTCCCTGTCCTTGAATCACCTTCCACTATCAAACTCATAGGTCTCAATGGCCGCGCAGCGGAACCCCTCCCAAAATAATCATCCGCCCACTCTTGCATCTCGTCGGGAACGTTAGTGAAGGAGGAGAGTGGAAACGGAGGAACCCACGGCTCCGGAGCCTTTTTGAATAACTTCTGGACATGCGTTTGTACTTTATCCAGATGTAAGACGTAATCCCTCGGTTGCTCTTCTTTCAAAATCTGCAATGCTTGTTCCGCAGATTGAGCATTTAGAACTTTCGCATACGTATCGTTGGCAGTTTGGCAACCTCCTCTAGCTGATCGTGGATCGATTTGGAAAACTCCAAAATCAATGAAGTCTCCGTCTTTCTCCACGTATTTTTTAACGTCTGACGAGCTCTTAGCTCCCTGAATGTTCGGATGGAAATGTGTTGACCTGGAAGGGGAGACGAGGTCGAAGAACCTGTTGTTCTTGCAATTGTACTTCCCTTCGAACTGGATAAGCACGTGGAGGTGAGGGCTCCCATCTTCGTGCAATTCCCTTGAAACACGGATGAATTTCTTACTGGTAGGGGTGTTCAACTCTTTCAATTGGGAAAGTGCTTCCTCTTTGGTCAAGGAGCACTTGGGATATGTAAGAAAATAGTTTTTGGAATTTATTCTAAAGGCCCTTGGAGAAGGCATATTTGCAGAAATGAACTGGGGTCTCGGCAACTCTGTGATATGAACTGGGGACTGGGGTCTTATTTATAGCAGACTCCATATAATTTTTGATGGACACGTGGCGGCCATCCGCTATAATATT
Gene Information
NCBI Accession
|
NP_808761.1
|
Location
|
254-1009 |
Gene Name
|
AV1 |
Protein Name
|
coat protein CP |
Coding Region
|
ATGCCTAAGCGGGATCCCTCATGGCGCCAGATGGCGGGAACCTCAAAGGTAAGCCGCTCTTCCAATTTCTCTCCTCGTGGAGGTGGAGGCCCAAAACCCACTAGGGCCTTTGAATGGGTTAACAGGCCCATGTACAGGAAGCCCAGGATATATCGGACGATCAGAACGCCTGATGTTCCTAGAGGCTGTGAAGGGCCCTGTAAGGTCCAGTCCTACGAGCAACGTCACGATATTTCCCATGTTGGGAAGGTGATGTGTATATCTGATGTGACACGCGGTAACGGTATTACTCACCGTGTCGGTAAGCGTTTCTGTGTTAAGTCTGTGTTATATTTTAGGCAAGATATGGATGGACGAAAATATCAAGCTCAAGAACACACGAACAGTTGCATGTTCTGGTTGGTCCGGGACCGTAGACCGTATGGCACACCAATGGATTTCGGCCAGGTGTTCAACATGTTTGACAACGAGCCCAGTACTGCAACCGTGAAGAACGATCTTCGTGATCGTTTCCAGGTCATGCACAAGTTCTATGCCAAGGTCACGGGTGGACAGTATGCCAGCAATGAGCAGGCGCTGGTCAAGCGGTTTTGGAAGGTCAACAATCATGTGGTCTACAATCACCAGGAAGCTGGCAAGTACGAGAATCACACGGAGAACGCATTGCTACTTTATATGGCATGTACCCATGCCTCTAACCCTGTGTATGCAACGCTCAAGATTCGAATCTATTTCTACGATTCGATCACGAATTAA |
Protein Sequence
|
MPKRDPSWRQMAGTSKVSRSSNFSPRGGGGPKPTRAFEWVNRPMYRKPRIYRTIRTPDVPRGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGITHRVGKRFCVKSVLYFRQDMDGRKYQAQEHTNSCMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATVKNDLRDRFQVMHKFYAKVTGGQYASNEQALVKRFWKVNNHVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSITN |
NCBI Accession
|
NP_808762.1
|
Location
|
581-862 |
Gene Name
|
AC5 |
Protein Name
|
AC5 protein |
Coding Region
|
ATGATTGTTGACCTTCCAAAACCGCTTGACCAGCGCCTGCTCATTGCTGGCATACTGTCCACCCGTGACCTTGGCATAGAACTTGTGCATGACCTGGAAACGATCACGAAGATCGTTCTTCACGGTTGCAGTACTGGGCTCGTTGTCAAACATGTTGAACACCTGGCCGAAATCCATTGGTGTGCCATACGGTCTACGGTCCCGGACCAACCAGAACATGCAACTGTTCGTGTGTTCTTGAGCTTGATATTTTCGTCCATCCATATCTTGCCTAAAATATAA |
Protein Sequence
|
MIVDLPKPLDQRLLIAGILSTRDLGIELVHDLETITKIVLHGCSTGLVVKHVEHLAEIHWCAIRSTVPDQPEHATVRVFLSLIFSSIHILPKI |
NCBI Accession
|
NP_808763.1
|
Location
|
1006-1407 |
Gene Name
|
AC3 |
Protein Name
|
replication enhancer protein Ren |
Coding Region
|
ATGGGATTCACGCACCGAGGGAACTCATCACTGTGCCTCAAGCAGAGAATGGCGTCTATATCTGGGGAGATAACAAATCCCCTGTATTTCAAGATATACCACGTAGAGGACCTGTTGTACACGACGACCAGAGTGTACCACGTACAGATACGGTTCAACCACAACCTCAGGAGAGCATTGGGTCTCCACAAGGCATTCCTGAACTTCCAAGTCTGGACGACATCTCTGACAGCTTCTGGAACGACTTATTTGATTAGGTTTAGACAGTTAGTCATGATGTATTTAGACCAATTAGGCGTTATTACGCTTAATAATGTACTTAGAGCTGTTTATTTTGCAACTGACAGATCATATGTCAGATATGTACTGGAAAATCATGAAATAAAATTCAAAATTTATTAA |
Protein Sequence
|
MGFTHRGNSSLCLKQRMASISGEITNPLYFKIYHVEDLLYTTTRVYHVQIRFNHNLRRALGLHKAFLNFQVWTTSLTASGTTYLIRFRQLVMMYLDQLGVITLNNVLRAVYFATDRSYVRYVLENHEIKFKIY |
NCBI Accession
|
NP_808764.1
|
Location
|
1151-1543 |
Gene Name
|
AC2 |
Protein Name
|
transactivator protein Trap |
Coding Region
|
ATGCTAAATTCATCTTCCTCGACTCCCCCCTCTATCAAACCACGACACAGAGCGGCGAAGAGGAGAGGAACTCGCCGTAGAAGGATTGATCTAGCGTGCGGGTGCTCCATATACGTCCACATCAACTGCAGCAACGATGGGATTCACGCACCGAGGGAACTCATCACTGTGCCTCAAGCAGAGAATGGCGTCTATATCTGGGGAGATAACAAATCCCCTGTATTTCAAGATATACCACGTAGAGGACCTGTTGTACACGACGACCAGAGTGTACCACGTACAGATACGGTTCAACCACAACCTCAGGAGAGCATTGGGTCTCCACAAGGCATTCCTGAACTTCCAAGTCTGGACGACATCTCTGACAGCTTCTGGAACGACTTATTTGATTAG |
Protein Sequence
|
MLNSSSSTPPSIKPRHRAAKRRGTRRRRIDLACGCSIYVHINCSNDGIHAPRELITVPQAENGVYIWGDNKSPVFQDIPRRGPVVHDDQSVPRTDTVQPQPQESIGSPQGIPELPSLDDISDSFWNDLFD |
NCBI Accession
|
NP_808765.1
|
Location
|
1464-2540 |
Gene Name
|
AC1 |
Protein Name
|
replication associated protein Rep |
Coding Region
|
ATGCCTTCTCCAAGGGCCTTTAGAATAAATTCCAAAAACTATTTTCTTACATATCCCAAGTGCTCCTTGACCAAAGAGGAAGCACTTTCCCAATTGAAAGAGTTGAACACCCCTACCAGTAAGAAATTCATCCGTGTTTCAAGGGAATTGCACGAAGATGGGAGCCCTCACCTCCACGTGCTTATCCAGTTCGAAGGGAAGTACAATTGCAAGAACAACAGGTTCTTCGACCTCGTCTCCCCTTCCAGGTCAACACATTTCCATCCGAACATTCAGGGAGCTAAGAGCTCGTCAGACGTTAAAAAATACGTGGAGAAAGACGGAGACTTCATTGATTTTGGAGTTTTCCAAATCGATCCACGATCAGCTAGAGGAGGTTGCCAAACTGCCAACGATACGTATGCGAAAGTTCTAAATGCTCAATCTGCGGAACAAGCATTGCAGATTTTGAAAGAAGAGCAACCGAGGGATTACGTCTTACATCTGGATAAAGTACAAACGCATGTCCAGAAGTTATTCAAAAAGGCTCCGGAGCCGTGGGTTCCTCCGTTTCCACTCTCCTCCTTCACTAACGTTCCCGACGAGATGCAAGAGTGGGCGGATGATTATTTTGGGAGGGGTTCCGCTGCGCGGCCATTGAGACCTATGAGTTTGATAGTGGAAGGTGATTCAAGGACAGGGAAAGACGATGTGGGCTCGTGCATTAGCCCACATAATTACTTAAGTGGACATCTGGACTTCAATAATAGGGTTTACTCAAACGAAGTGGATTATAACGTCATTGATGATGTCACTCCGCAATATCTAAAGTTAAAGCACTGGAAGGAGCTGATTGGTGCTCAAAAAGACTGGCAGTCAAATTGTAAGTACGGAAAGCCAGTTCAAATTAAAGGTGGAATCCCATCAATCGTGCTCTGCAATCCTGGGGAGGGAGTCAGTTATAAAGAGTTCCTCGACAAAGAGGAGAATGCAGGTCTAAAGTCGTGGACACTCCACAATGCTAAATTCATCTTCCTCGACTCCCCCCTCTATCAAACCACGACACAGAGCGGCGAAGAGGAGAGGAACTCGCCGTAG |
Protein Sequence
|
MPSPRAFRINSKNYFLTYPKCSLTKEEALSQLKELNTPTSKKFIRVSRELHEDGSPHLHVLIQFEGKYNCKNNRFFDLVSPSRSTHFHPNIQGAKSSSDVKKYVEKDGDFIDFGVFQIDPRSARGGCQTANDTYAKVLNAQSAEQALQILKEEQPRDYVLHLDKVQTHVQKLFKKAPEPWVPPFPLSSFTNVPDEMQEWADDYFGRGSAARPLRPMSLIVEGDSRTGKDDVGSCISPHNYLSGHLDFNNRVYSNEVDYNVIDDVTPQYLKLKHWKELIGAQKDWQSNCKYGKPVQIKGGIPSIVLCNPGEGVSYKEFLDKEENAGLKSWTLHNAKFIFLDSPLYQTTTQSGEEERNSP |
NCBI Accession
|
NP_808766.1
|
Location
|
2126-2383 |
Gene Name
|
AC4 |
Protein Name
|
AC4 protein |
Coding Region
|
ATGGGAGCCCTCACCTCCACGTGCTTATCCAGTTCGAAGGGAAGTACAATTGCAAGAACAACAGGTTCTTCGACCTCGTCTCCCCTTCCAGGTCAACACATTTCCATCCGAACATTCAGGGAGCTAAGAGCTCGTCAGACGTTAAAAAATACGTGGAGAAAGACGGAGACTTCATTGATTTTGGAGTTTTCCAAATCGATCCACGATCAGCTAGAGGAGGTTGCCAAACTGCCAACGATACGTATGCGAAAGTTCTAA |
Protein Sequence
|
MGALTSTCLSSSKGSTIARTTGSSTSSPLPGQHISIRTFRELRARQTLKNTWRKTETSLILEFSKSIHDQLEEVAKLPTIRMRKF |