Sida yellow mosaic China virus
Basic Information
Genus |
Begomovirus
|
NCBI Assembly |
GCF_000897235.1 |
Isolate |
China |
Release date |
2015/2/22 |
Submitter |
Xiong,Q., Zhou,X.P. |
Host |
|
Vector |
|
Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGCGATTTTTTAGGGTGGACCCCCGCCTGCGCTTTTGTCCCCCAATCAAAACGCTCCCTCAAAACTAATTTAAAAAAAACCCGCTATAAATACTTAGTGGGCAAGTAATGAAGGAAATAAAATGTGGGATCCACTGCTGAATGAGTTTCCAGAAACCGTTCACGGTCTGCGGTGTATGCTTGCGGTTAAATACTGTCAACTATTGGAGCAGACATACGCACCTGATACGGTGGGATACGATCTTCTCCGAGATTTAATTTCAGTCATCCGATCTCGTGACTATGTCGAAGCGACCCGCCGATATAGTCATTTCAACTCCCGCATCCAAGGTACGCCGACGGCTGAACTTCGACAGCCCAGGCATGACTCGTGTTGCTGCCCCCACTGTCCTCGTCACAAATCGAAAGCGTTCGTGGACTTACAGGCCCACGAATCGCAAACCCAGAATGTACAGGATGTACAGAAGCCCTGATGTTCCTCGTGGATGTGAAGGCCCGTGTAAGGTCCAATCTTATGAAGCCCGTCATGATGTAGCCCATGTAGGTAAGGTATTGTGTGTGTCCGACGTTACTCGTGGTAATGGGCTGACTCATCGTGTTGGTAAGAGGTTCTGTATCAAGTCGATTTACGTTCTGGGTAAGGTCTGGATGGATGAGAACATTAAGAAGAAAAATCACACTAACACTGTTATGTTTTTTTTAGTTCGTGATCGGAGACCGTTTGGGACTCCTCAAGATTTCGGTCAGGTGTTTAGTATGTATGATAATGAGCCTAGTACTGCCACTGTGAAGAACGATAATAGAGATCGTTTCCAGGTATTGCGTCGATTTCAGGCAACGGTCACTGGTGGAGACTATGCGTGTAAGGAGCAAGCTTTAGTTAGGAAGTTTATGAAAGTTAACAATCATGTCACCTATAATCATCAGGAGGCAGCGAAGTATGACAATCATACTGAGAATGCGTTGTTGTTGTATATGGCATGTACTCATGCCAGTAACCCTGTGTATGCTACTTTGAAAATCAGGATCTACTTCTATGATTCTGTTCAGAATTAATAAAGTTTGAATTTTATTATATATGAAAACTGGGCCTCAATAGTGCCTTCGAGTTTATCCCACAATACATGATTAATTGCTCTAATTACATTATTAATACTAATCACTCCCAATCGGTCTAGATATTTCATACATTGGTATTTAAATACTCTTAAGAAACGCCAGGTCTGAGGATGTAAACGAGTCCAGATTCGGCAGATTAGAAAACATTTGTGTATCCCCAACGCTTTCCTCAGGTTGTAATTGAACTGGACTTGGACTGTGATGACGTCGTGGTTCGTCGAGAACGGTCTCTCGTGGTGCTGGGTTATCTTGAAATACAGGGGATTGTTGACCGTCCAGATATATACGCCATTCTCTGCCTGAGTTGCAGTGATGGGTTCCCCGGTGCGAAAATCCATGGTTTGCGCAATTGAGCCCAAAATAATAAGAGCAGCCGCAGGGTAGATCAACGCGACGTCTCCGAATGGGCCTCTTCTTGGCTTCCCTGTGTTGGACTTTGATGGGAACCGGAATAGAGTGGCACTTCGAGGGTGACAAAGGTCGCATTTTTTAAAGCCCAATTTTTGAGTGCGGAGTTCTTTTCCTCATCCAAGTACTCTTTATAGCTGGAATTTGGTCCTGGATTGCAGAGGAAGATTGTTGGTATCCCGCCTTTAATTTGAACTGGCTTCCCGTACTTTGTGTTTGATTGCCAGTCCCTTTGGGCACCCATGAACTCCTTAAAGTGCTTTAGGTAATGCGGGTCTACGTCATCAATGACGTTATACCACGCCTCATTACTGTATATCTTTGGACTCAGATCCAGGTGTCCACATAAATAGTTATGTGGTCCTAATGATCTGGCCCACATTGTTTTACCTGTGCGACTATCTCCCTCTATCACTATACTGAGAGGTCTCAAAGGCCGCGCAGCGGCAGCCACCACGTTCTCCGCCGCCCACTCTTCGAGTTCGTCCGGAACTCGATCAAAAGAAGAAGAAGAAAAAGGCGAAACATAAACCCCCATCGGAGGTGTAAAAATCCTATCTAAATTAGCGTTTAAATTATGAAATTGTAAAACATAATCTTTAGGAGCTAACTCCTTTATTACATTAAGAGCCTCCGACTTACTTCCGCTGTTAAGTGCCTGGGCGTAAGCGTCGTTGGCTGATTGTTGACCCCCTCTAGCAGATCTTCCGTCGACCTGAAACTCTCCCCAGTCGAGGGTGTCTCCGTCCTTGTCGATATAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGAATGTTTGGATGGAAATGTACTGACCGGGTTGGGGATACCAGATCGAAGAATCTGTTATTTTGGCACTTGTATTTTCCCTCGAACTGAATGAGCACGTGGAGATGAGGGCTCCCATCTTCGTGAAGCTCTCTGCAGATTTTGATGAATTTTTTGTTTGTTGGGGTTTTGAGGTTTTGTAATTGGGAAAGTGTCTCTTCTTTGGTGAGAGAGCATTGGGGATAAGTAAGAAAGAAATTTTTGGCATTTATTAAAAACCGTTTTGGGGGTGCCATTTGACTTGGTCAATTGGGTCTCAAAAAACTTGCTCATGCAATCGGGGAATGGGTCTCAATATATAGTAGAGGACCTTAATGGCATAATTGTAAATAGCAAAAAGAAATTCAAATTCAAAATCCCAAAGCGGCCATCCGTATAATATT
Gene Information
NCBI Accession
|
YP_006390084.1
|
Location
|
134-484 |
Gene Name
|
av2 |
Protein Name
|
putative AV2 protein |
Coding Region
|
ATGTGGGATCCACTGCTGAATGAGTTTCCAGAAACCGTTCACGGTCTGCGGTGTATGCTTGCGGTTAAATACTGTCAACTATTGGAGCAGACATACGCACCTGATACGGTGGGATACGATCTTCTCCGAGATTTAATTTCAGTCATCCGATCTCGTGACTATGTCGAAGCGACCCGCCGATATAGTCATTTCAACTCCCGCATCCAAGGTACGCCGACGGCTGAACTTCGACAGCCCAGGCATGACTCGTGTTGCTGCCCCCACTGTCCTCGTCACAAATCGAAAGCGTTCGTGGACTTACAGGCCCACGAATCGCAAACCCAGAATGTACAGGATGTACAGAAGCCCTGA |
Protein Sequence
|
MWDPLLNEFPETVHGLRCMLAVKYCQLLEQTYAPDTVGYDLLRDLISVIRSRDYVEATRRYSHFNSRIQGTPTAELRQPRHDSCCCPHCPRHKSKAFVDLQAHESQTQNVQDVQKP |
NCBI Accession
|
YP_006390085.1
|
Location
|
294-1067 |
Gene Name
|
av1 |
Protein Name
|
coat protein |
Coding Region
|
ATGTCGAAGCGACCCGCCGATATAGTCATTTCAACTCCCGCATCCAAGGTACGCCGACGGCTGAACTTCGACAGCCCAGGCATGACTCGTGTTGCTGCCCCCACTGTCCTCGTCACAAATCGAAAGCGTTCGTGGACTTACAGGCCCACGAATCGCAAACCCAGAATGTACAGGATGTACAGAAGCCCTGATGTTCCTCGTGGATGTGAAGGCCCGTGTAAGGTCCAATCTTATGAAGCCCGTCATGATGTAGCCCATGTAGGTAAGGTATTGTGTGTGTCCGACGTTACTCGTGGTAATGGGCTGACTCATCGTGTTGGTAAGAGGTTCTGTATCAAGTCGATTTACGTTCTGGGTAAGGTCTGGATGGATGAGAACATTAAGAAGAAAAATCACACTAACACTGTTATGTTTTTTTTAGTTCGTGATCGGAGACCGTTTGGGACTCCTCAAGATTTCGGTCAGGTGTTTAGTATGTATGATAATGAGCCTAGTACTGCCACTGTGAAGAACGATAATAGAGATCGTTTCCAGGTATTGCGTCGATTTCAGGCAACGGTCACTGGTGGAGACTATGCGTGTAAGGAGCAAGCTTTAGTTAGGAAGTTTATGAAAGTTAACAATCATGTCACCTATAATCATCAGGAGGCAGCGAAGTATGACAATCATACTGAGAATGCGTTGTTGTTGTATATGGCATGTACTCATGCCAGTAACCCTGTGTATGCTACTTTGAAAATCAGGATCTACTTCTATGATTCTGTTCAGAATTAA |
Protein Sequence
|
MSKRPADIVISTPASKVRRRLNFDSPGMTRVAAPTVLVTNRKRSWTYRPTNRKPRMYRMYRSPDVPRGCEGPCKVQSYEARHDVAHVGKVLCVSDVTRGNGLTHRVGKRFCIKSIYVLGKVWMDENIKKKNHTNTVMFFLVRDRRPFGTPQDFGQVFSMYDNEPSTATVKNDNRDRFQVLRRFQATVTGGDYACKEQALVRKFMKVNNHVTYNHQEAAKYDNHTENALLLYMACTHASNPVYATLKIRIYFYDSVQN |
NCBI Accession
|
YP_006390086.1
|
Location
|
1064-1468 |
Gene Name
|
ac3 |
Protein Name
|
replication enhancer protein |
Coding Region
|
ATGGATTTTCGCACCGGGGAACCCATCACTGCAACTCAGGCAGAGAATGGCGTATATATCTGGACGGTCAACAATCCCCTGTATTTCAAGATAACCCAGCACCACGAGAGACCGTTCTCGACGAACCACGACGTCATCACAGTCCAAGTCCAGTTCAATTACAACCTGAGGAAAGCGTTGGGGATACACAAATGTTTTCTAATCTGCCGAATCTGGACTCGTTTACATCCTCAGACCTGGCGTTTCTTAAGAGTATTTAAATACCAATGTATGAAATATCTAGACCGATTGGGAGTGATTAGTATTAATAATGTAATTAGAGCAATTAATCATGTATTGTGGGATAAACTCGAAGGCACTATTGAGGCCCAGTTTTCATATATAATAAAATTCAAACTTTATTAA |
Protein Sequence
|
MDFRTGEPITATQAENGVYIWTVNNPLYFKITQHHERPFSTNHDVITVQVQFNYNLRKALGIHKCFLICRIWTRLHPQTWRFLRVFKYQCMKYLDRLGVISINNVIRAINHVLWDKLEGTIEAQFSYIIKFKLY |
NCBI Accession
|
YP_006390087.1
|
Location
|
1209-1616 |
Gene Name
|
ac2 |
Protein Name
|
transcriptional activator protein |
Coding Region
|
ATGCGACCTTTGTCACCCTCGAAGTGCCACTCTATTCCGGTTCCCATCAAAGTCCAACACAGGGAAGCCAAGAAGAGGCCCATTCGGAGACGTCGCGTTGATCTACCCTGCGGCTGCTCTTATTATTTTGGGCTCAATTGCGCAAACCATGGATTTTCGCACCGGGGAACCCATCACTGCAACTCAGGCAGAGAATGGCGTATATATCTGGACGGTCAACAATCCCCTGTATTTCAAGATAACCCAGCACCACGAGAGACCGTTCTCGACGAACCACGACGTCATCACAGTCCAAGTCCAGTTCAATTACAACCTGAGGAAAGCGTTGGGGATACACAAATGTTTTCTAATCTGCCGAATCTGGACTCGTTTACATCCTCAGACCTGGCGTTTCTTAAGAGTATTTAA |
Protein Sequence
|
MRPLSPSKCHSIPVPIKVQHREAKKRPIRRRRVDLPCGCSYYFGLNCANHGFSHRGTHHCNSGREWRIYLDGQQSPVFQDNPAPRETVLDEPRRHHSPSPVQLQPEESVGDTQMFSNLPNLDSFTSSDLAFLKSI |
NCBI Accession
|
YP_006390088.1
|
Location
|
1516-2604 |
Gene Name
|
ac1 |
Protein Name
|
replication-associated protein |
Coding Region
|
ATGGCACCCCCAAAACGGTTTTTAATAAATGCCAAAAATTTCTTTCTTACTTATCCCCAATGCTCTCTCACCAAAGAAGAGACACTTTCCCAATTACAAAACCTCAAAACCCCAACAAACAAAAAATTCATCAAAATCTGCAGAGAGCTTCACGAAGATGGGAGCCCTCATCTCCACGTGCTCATTCAGTTCGAGGGAAAATACAAGTGCCAAAATAACAGATTCTTCGATCTGGTATCCCCAACCCGGTCAGTACATTTCCATCCAAACATTCAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTATATCGACAAGGACGGAGACACCCTCGACTGGGGAGAGTTTCAGGTCGACGGAAGATCTGCTAGAGGGGGTCAACAATCAGCCAACGACGCTTACGCCCAGGCACTTAACAGCGGAAGTAAGTCGGAGGCTCTTAATGTAATAAAGGAGTTAGCTCCTAAAGATTATGTTTTACAATTTCATAATTTAAACGCTAATTTAGATAGGATTTTTACACCTCCGATGGGGGTTTATGTTTCGCCTTTTTCTTCTTCTTCTTTTGATCGAGTTCCGGACGAACTCGAAGAGTGGGCGGCGGAGAACGTGGTGGCTGCCGCTGCGCGGCCTTTGAGACCTCTCAGTATAGTGATAGAGGGAGATAGTCGCACAGGTAAAACAATGTGGGCCAGATCATTAGGACCACATAACTATTTATGTGGACACCTGGATCTGAGTCCAAAGATATACAGTAATGAGGCGTGGTATAACGTCATTGATGACGTAGACCCGCATTACCTAAAGCACTTTAAGGAGTTCATGGGTGCCCAAAGGGACTGGCAATCAAACACAAAGTACGGGAAGCCAGTTCAAATTAAAGGCGGGATACCAACAATCTTCCTCTGCAATCCAGGACCAAATTCCAGCTATAAAGAGTACTTGGATGAGGAAAAGAACTCCGCACTCAAAAATTGGGCTTTAAAAAATGCGACCTTTGTCACCCTCGAAGTGCCACTCTATTCCGGTTCCCATCAAAGTCCAACACAGGGAAGCCAAGAAGAGGCCCATTCGGAGACGTCGCGTTGA |
Protein Sequence
|
MAPPKRFLINAKNFFLTYPQCSLTKEETLSQLQNLKTPTNKKFIKICRELHEDGSPHLHVLIQFEGKYKCQNNRFFDLVSPTRSVHFHPNIQGAKSSSDVKSYIDKDGDTLDWGEFQVDGRSARGGQQSANDAYAQALNSGSKSEALNVIKELAPKDYVLQFHNLNANLDRIFTPPMGVYVSPFSSSSFDRVPDELEEWAAENVVAAAARPLRPLSIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKIYSNEAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEYLDEEKNSALKNWALKNATFVTLEVPLYSGSHQSPTQGSQEEAHSETSR |
NCBI Accession
|
YP_006390089.1
|
Location
|
2157-2447 |
Gene Name
|
ac4 |
Protein Name
|
putative AC4 protein |
Coding Region
|
ATGGGAGCCCTCATCTCCACGTGCTCATTCAGTTCGAGGGAAAATACAAGTGCCAAAATAACAGATTCTTCGATCTGGTATCCCCAACCCGGTCAGTACATTTCCATCCAAACATTCAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTATATCGACAAGGACGGAGACACCCTCGACTGGGGAGAGTTTCAGGTCGACGGAAGATCTGCTAGAGGGGGTCAACAATCAGCCAACGACGCTTACGCCCAGGCACTTAACAGCGGAAGTAAGTCGGAGGCTCTTAATGTAA |
Protein Sequence
|
MGALISTCSFSSRENTSAKITDSSIWYPQPGQYISIQTFRELNPAPTSSPISTRTETPSTGESFRSTEDLLEGVNNQPTTLTPRHLTAEVSRRLLM |