Sida yellow mosaic China virus


Basic Information

Genus Begomovirus
NCBI Assembly GCF_000897235.1
Isolate China
Release date 2015/2/22
Submitter Xiong,Q., Zhou,X.P.
Host
Vector
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_017987
ACCGGATGGCCGCGCGATTTTTTAGGGTGGACCCCCGCCTGCGCTTTTGTCCCCCAATCAAAACGCTCCCTCAAAACTAATTTAAAAAAAACCCGCTATAAATACTTAGTGGGCAAGTAATGAAGGAAATAAAATGTGGGATCCACTGCTGAATGAGTTTCCAGAAACCGTTCACGGTCTGCGGTGTATGCTTGCGGTTAAATACTGTCAACTATTGGAGCAGACATACGCACCTGATACGGTGGGATACGATCTTCTCCGAGATTTAATTTCAGTCATCCGATCTCGTGACTATGTCGAAGCGACCCGCCGATATAGTCATTTCAACTCCCGCATCCAAGGTACGCCGACGGCTGAACTTCGACAGCCCAGGCATGACTCGTGTTGCTGCCCCCACTGTCCTCGTCACAAATCGAAAGCGTTCGTGGACTTACAGGCCCACGAATCGCAAACCCAGAATGTACAGGATGTACAGAAGCCCTGATGTTCCTCGTGGATGTGAAGGCCCGTGTAAGGTCCAATCTTATGAAGCCCGTCATGATGTAGCCCATGTAGGTAAGGTATTGTGTGTGTCCGACGTTACTCGTGGTAATGGGCTGACTCATCGTGTTGGTAAGAGGTTCTGTATCAAGTCGATTTACGTTCTGGGTAAGGTCTGGATGGATGAGAACATTAAGAAGAAAAATCACACTAACACTGTTATGTTTTTTTTAGTTCGTGATCGGAGACCGTTTGGGACTCCTCAAGATTTCGGTCAGGTGTTTAGTATGTATGATAATGAGCCTAGTACTGCCACTGTGAAGAACGATAATAGAGATCGTTTCCAGGTATTGCGTCGATTTCAGGCAACGGTCACTGGTGGAGACTATGCGTGTAAGGAGCAAGCTTTAGTTAGGAAGTTTATGAAAGTTAACAATCATGTCACCTATAATCATCAGGAGGCAGCGAAGTATGACAATCATACTGAGAATGCGTTGTTGTTGTATATGGCATGTACTCATGCCAGTAACCCTGTGTATGCTACTTTGAAAATCAGGATCTACTTCTATGATTCTGTTCAGAATTAATAAAGTTTGAATTTTATTATATATGAAAACTGGGCCTCAATAGTGCCTTCGAGTTTATCCCACAATACATGATTAATTGCTCTAATTACATTATTAATACTAATCACTCCCAATCGGTCTAGATATTTCATACATTGGTATTTAAATACTCTTAAGAAACGCCAGGTCTGAGGATGTAAACGAGTCCAGATTCGGCAGATTAGAAAACATTTGTGTATCCCCAACGCTTTCCTCAGGTTGTAATTGAACTGGACTTGGACTGTGATGACGTCGTGGTTCGTCGAGAACGGTCTCTCGTGGTGCTGGGTTATCTTGAAATACAGGGGATTGTTGACCGTCCAGATATATACGCCATTCTCTGCCTGAGTTGCAGTGATGGGTTCCCCGGTGCGAAAATCCATGGTTTGCGCAATTGAGCCCAAAATAATAAGAGCAGCCGCAGGGTAGATCAACGCGACGTCTCCGAATGGGCCTCTTCTTGGCTTCCCTGTGTTGGACTTTGATGGGAACCGGAATAGAGTGGCACTTCGAGGGTGACAAAGGTCGCATTTTTTAAAGCCCAATTTTTGAGTGCGGAGTTCTTTTCCTCATCCAAGTACTCTTTATAGCTGGAATTTGGTCCTGGATTGCAGAGGAAGATTGTTGGTATCCCGCCTTTAATTTGAACTGGCTTCCCGTACTTTGTGTTTGATTGCCAGTCCCTTTGGGCACCCATGAACTCCTTAAAGTGCTTTAGGTAATGCGGGTCTACGTCATCAATGACGTTATACCACGCCTCATTACTGTATATCTTTGGACTCAGATCCAGGTGTCCACATAAATAGTTATGTGGTCCTAATGATCTGGCCCACATTGTTTTACCTGTGCGACTATCTCCCTCTATCACTATACTGAGAGGTCTCAAAGGCCGCGCAGCGGCAGCCACCACGTTCTCCGCCGCCCACTCTTCGAGTTCGTCCGGAACTCGATCAAAAGAAGAAGAAGAAAAAGGCGAAACATAAACCCCCATCGGAGGTGTAAAAATCCTATCTAAATTAGCGTTTAAATTATGAAATTGTAAAACATAATCTTTAGGAGCTAACTCCTTTATTACATTAAGAGCCTCCGACTTACTTCCGCTGTTAAGTGCCTGGGCGTAAGCGTCGTTGGCTGATTGTTGACCCCCTCTAGCAGATCTTCCGTCGACCTGAAACTCTCCCCAGTCGAGGGTGTCTCCGTCCTTGTCGATATAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGAATGTTTGGATGGAAATGTACTGACCGGGTTGGGGATACCAGATCGAAGAATCTGTTATTTTGGCACTTGTATTTTCCCTCGAACTGAATGAGCACGTGGAGATGAGGGCTCCCATCTTCGTGAAGCTCTCTGCAGATTTTGATGAATTTTTTGTTTGTTGGGGTTTTGAGGTTTTGTAATTGGGAAAGTGTCTCTTCTTTGGTGAGAGAGCATTGGGGATAAGTAAGAAAGAAATTTTTGGCATTTATTAAAAACCGTTTTGGGGGTGCCATTTGACTTGGTCAATTGGGTCTCAAAAAACTTGCTCATGCAATCGGGGAATGGGTCTCAATATATAGTAGAGGACCTTAATGGCATAATTGTAAATAGCAAAAAGAAATTCAAATTCAAAATCCCAAAGCGGCCATCCGTATAATATT

Gene Information

NCBI Accession YP_006390084.1
Location 134-484
Gene Name av2
Protein Name putative AV2 protein
Coding Region ATGTGGGATCCACTGCTGAATGAGTTTCCAGAAACCGTTCACGGTCTGCGGTGTATGCTTGCGGTTAAATACTGTCAACTATTGGAGCAGACATACGCACCTGATACGGTGGGATACGATCTTCTCCGAGATTTAATTTCAGTCATCCGATCTCGTGACTATGTCGAAGCGACCCGCCGATATAGTCATTTCAACTCCCGCATCCAAGGTACGCCGACGGCTGAACTTCGACAGCCCAGGCATGACTCGTGTTGCTGCCCCCACTGTCCTCGTCACAAATCGAAAGCGTTCGTGGACTTACAGGCCCACGAATCGCAAACCCAGAATGTACAGGATGTACAGAAGCCCTGA
Protein Sequence MWDPLLNEFPETVHGLRCMLAVKYCQLLEQTYAPDTVGYDLLRDLISVIRSRDYVEATRRYSHFNSRIQGTPTAELRQPRHDSCCCPHCPRHKSKAFVDLQAHESQTQNVQDVQKP

NCBI Accession YP_006390085.1
Location 294-1067
Gene Name av1
Protein Name coat protein
Coding Region ATGTCGAAGCGACCCGCCGATATAGTCATTTCAACTCCCGCATCCAAGGTACGCCGACGGCTGAACTTCGACAGCCCAGGCATGACTCGTGTTGCTGCCCCCACTGTCCTCGTCACAAATCGAAAGCGTTCGTGGACTTACAGGCCCACGAATCGCAAACCCAGAATGTACAGGATGTACAGAAGCCCTGATGTTCCTCGTGGATGTGAAGGCCCGTGTAAGGTCCAATCTTATGAAGCCCGTCATGATGTAGCCCATGTAGGTAAGGTATTGTGTGTGTCCGACGTTACTCGTGGTAATGGGCTGACTCATCGTGTTGGTAAGAGGTTCTGTATCAAGTCGATTTACGTTCTGGGTAAGGTCTGGATGGATGAGAACATTAAGAAGAAAAATCACACTAACACTGTTATGTTTTTTTTAGTTCGTGATCGGAGACCGTTTGGGACTCCTCAAGATTTCGGTCAGGTGTTTAGTATGTATGATAATGAGCCTAGTACTGCCACTGTGAAGAACGATAATAGAGATCGTTTCCAGGTATTGCGTCGATTTCAGGCAACGGTCACTGGTGGAGACTATGCGTGTAAGGAGCAAGCTTTAGTTAGGAAGTTTATGAAAGTTAACAATCATGTCACCTATAATCATCAGGAGGCAGCGAAGTATGACAATCATACTGAGAATGCGTTGTTGTTGTATATGGCATGTACTCATGCCAGTAACCCTGTGTATGCTACTTTGAAAATCAGGATCTACTTCTATGATTCTGTTCAGAATTAA
Protein Sequence MSKRPADIVISTPASKVRRRLNFDSPGMTRVAAPTVLVTNRKRSWTYRPTNRKPRMYRMYRSPDVPRGCEGPCKVQSYEARHDVAHVGKVLCVSDVTRGNGLTHRVGKRFCIKSIYVLGKVWMDENIKKKNHTNTVMFFLVRDRRPFGTPQDFGQVFSMYDNEPSTATVKNDNRDRFQVLRRFQATVTGGDYACKEQALVRKFMKVNNHVTYNHQEAAKYDNHTENALLLYMACTHASNPVYATLKIRIYFYDSVQN

NCBI Accession YP_006390086.1
Location 1064-1468
Gene Name ac3
Protein Name replication enhancer protein
Coding Region ATGGATTTTCGCACCGGGGAACCCATCACTGCAACTCAGGCAGAGAATGGCGTATATATCTGGACGGTCAACAATCCCCTGTATTTCAAGATAACCCAGCACCACGAGAGACCGTTCTCGACGAACCACGACGTCATCACAGTCCAAGTCCAGTTCAATTACAACCTGAGGAAAGCGTTGGGGATACACAAATGTTTTCTAATCTGCCGAATCTGGACTCGTTTACATCCTCAGACCTGGCGTTTCTTAAGAGTATTTAAATACCAATGTATGAAATATCTAGACCGATTGGGAGTGATTAGTATTAATAATGTAATTAGAGCAATTAATCATGTATTGTGGGATAAACTCGAAGGCACTATTGAGGCCCAGTTTTCATATATAATAAAATTCAAACTTTATTAA
Protein Sequence MDFRTGEPITATQAENGVYIWTVNNPLYFKITQHHERPFSTNHDVITVQVQFNYNLRKALGIHKCFLICRIWTRLHPQTWRFLRVFKYQCMKYLDRLGVISINNVIRAINHVLWDKLEGTIEAQFSYIIKFKLY

NCBI Accession YP_006390087.1
Location 1209-1616
Gene Name ac2
Protein Name transcriptional activator protein
Coding Region ATGCGACCTTTGTCACCCTCGAAGTGCCACTCTATTCCGGTTCCCATCAAAGTCCAACACAGGGAAGCCAAGAAGAGGCCCATTCGGAGACGTCGCGTTGATCTACCCTGCGGCTGCTCTTATTATTTTGGGCTCAATTGCGCAAACCATGGATTTTCGCACCGGGGAACCCATCACTGCAACTCAGGCAGAGAATGGCGTATATATCTGGACGGTCAACAATCCCCTGTATTTCAAGATAACCCAGCACCACGAGAGACCGTTCTCGACGAACCACGACGTCATCACAGTCCAAGTCCAGTTCAATTACAACCTGAGGAAAGCGTTGGGGATACACAAATGTTTTCTAATCTGCCGAATCTGGACTCGTTTACATCCTCAGACCTGGCGTTTCTTAAGAGTATTTAA
Protein Sequence MRPLSPSKCHSIPVPIKVQHREAKKRPIRRRRVDLPCGCSYYFGLNCANHGFSHRGTHHCNSGREWRIYLDGQQSPVFQDNPAPRETVLDEPRRHHSPSPVQLQPEESVGDTQMFSNLPNLDSFTSSDLAFLKSI

NCBI Accession YP_006390088.1
Location 1516-2604
Gene Name ac1
Protein Name replication-associated protein
Coding Region ATGGCACCCCCAAAACGGTTTTTAATAAATGCCAAAAATTTCTTTCTTACTTATCCCCAATGCTCTCTCACCAAAGAAGAGACACTTTCCCAATTACAAAACCTCAAAACCCCAACAAACAAAAAATTCATCAAAATCTGCAGAGAGCTTCACGAAGATGGGAGCCCTCATCTCCACGTGCTCATTCAGTTCGAGGGAAAATACAAGTGCCAAAATAACAGATTCTTCGATCTGGTATCCCCAACCCGGTCAGTACATTTCCATCCAAACATTCAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTATATCGACAAGGACGGAGACACCCTCGACTGGGGAGAGTTTCAGGTCGACGGAAGATCTGCTAGAGGGGGTCAACAATCAGCCAACGACGCTTACGCCCAGGCACTTAACAGCGGAAGTAAGTCGGAGGCTCTTAATGTAATAAAGGAGTTAGCTCCTAAAGATTATGTTTTACAATTTCATAATTTAAACGCTAATTTAGATAGGATTTTTACACCTCCGATGGGGGTTTATGTTTCGCCTTTTTCTTCTTCTTCTTTTGATCGAGTTCCGGACGAACTCGAAGAGTGGGCGGCGGAGAACGTGGTGGCTGCCGCTGCGCGGCCTTTGAGACCTCTCAGTATAGTGATAGAGGGAGATAGTCGCACAGGTAAAACAATGTGGGCCAGATCATTAGGACCACATAACTATTTATGTGGACACCTGGATCTGAGTCCAAAGATATACAGTAATGAGGCGTGGTATAACGTCATTGATGACGTAGACCCGCATTACCTAAAGCACTTTAAGGAGTTCATGGGTGCCCAAAGGGACTGGCAATCAAACACAAAGTACGGGAAGCCAGTTCAAATTAAAGGCGGGATACCAACAATCTTCCTCTGCAATCCAGGACCAAATTCCAGCTATAAAGAGTACTTGGATGAGGAAAAGAACTCCGCACTCAAAAATTGGGCTTTAAAAAATGCGACCTTTGTCACCCTCGAAGTGCCACTCTATTCCGGTTCCCATCAAAGTCCAACACAGGGAAGCCAAGAAGAGGCCCATTCGGAGACGTCGCGTTGA
Protein Sequence MAPPKRFLINAKNFFLTYPQCSLTKEETLSQLQNLKTPTNKKFIKICRELHEDGSPHLHVLIQFEGKYKCQNNRFFDLVSPTRSVHFHPNIQGAKSSSDVKSYIDKDGDTLDWGEFQVDGRSARGGQQSANDAYAQALNSGSKSEALNVIKELAPKDYVLQFHNLNANLDRIFTPPMGVYVSPFSSSSFDRVPDELEEWAAENVVAAAARPLRPLSIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKIYSNEAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEYLDEEKNSALKNWALKNATFVTLEVPLYSGSHQSPTQGSQEEAHSETSR

NCBI Accession YP_006390089.1
Location 2157-2447
Gene Name ac4
Protein Name putative AC4 protein
Coding Region ATGGGAGCCCTCATCTCCACGTGCTCATTCAGTTCGAGGGAAAATACAAGTGCCAAAATAACAGATTCTTCGATCTGGTATCCCCAACCCGGTCAGTACATTTCCATCCAAACATTCAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTATATCGACAAGGACGGAGACACCCTCGACTGGGGAGAGTTTCAGGTCGACGGAAGATCTGCTAGAGGGGGTCAACAATCAGCCAACGACGCTTACGCCCAGGCACTTAACAGCGGAAGTAAGTCGGAGGCTCTTAATGTAA
Protein Sequence MGALISTCSFSSRENTSAKITDSSIWYPQPGQYISIQTFRELNPAPTSSPISTRTETPSTGESFRSTEDLLEGVNNQPTTLTPRHLTAEVSRRLLM