Sida yellow mosaic Alagoas virus


Basic Information

Genus Begomovirus
NCBI Assembly GCF_000906655.1
Isolate Brazil
Release date 2015/2/22
Submitter Tavares,S.S., Ramos-Sobrinho,R., Gonzales-Aguilera,J., Lima,G.S.A., Assuncao,I.P., Zerbini,F.M.
Host
Vector
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_020255
ACCGGATGGCCCGCGATTTTTCCCCCCCTCCTACGTGGGCGCTCTGGTGTCCGTTGGATTGTTCCCCCCCCGACCCGCTCCCGCATTTCGCGCCGCTTTGTCTGCCATTATATGTGGTCCCTAAAGTGAAAGACATCTAACAGGCCCAATCATATTGGGCCCTGAATGATTATTTAGTTTTGAAATACTTGGGCGCGAAGTTTTTAGATTTGTATAAATTTGACCCAACTGTGATTGGACTACACAGGCTTTAATTCAAAATGTCTAAGCGGGAAGCCCCGTGGCGTTCTATGGCGGGAGTTAGTAAAGTGCGGCGCTCCCTCAATTTTTCACCTCGTGGAGGTTTGGGCTCTAGGTCAAACAAGGCCATGGAGTGGGTCAACAGGCCCATGTACAAGAAGCCCAGAATTTACCGGGCCTTCAGAACTTCTGACGTCCCTCGAGGGTGTGAAGGGCCTTGCAAGGTCCAGTCCTACGAACAGCGGCACGACATCTCACATGTCGGCAAGGTGATGTGTATATCCGATGTCACCCGTGGTAACGGTATTACGCACCGTGTGGGTAAGCGATTCTGTGTTAAGTCTGTATATATTTTAGGTAAGGTATGGATGGATGAGAATATTAAGCTCAAGAACCACACGAACAGTGTTATGTTCTGGTTGGTCAGGGATCGTAGACCGTATGGTACACCAATGGATTTTGGCCAGGTGTTCAATATGTTTGACAACGAGCCCAGTACTGCAACGGTTAAGAACGATCTTCGAGATCGTTATCAGGTTATGCACAAGTTCTATGCCAAAGTAACTGGTGGACAATATGCCAGCAATGAGCAGGCTCTGGTCAAGAGGTTCTGGAAGGTCAACAATCATGTGGTGTACAATCACCAGGAGGCTGGGAAGTACGAGAATCATACGGAGAACGCTCTGTTATTGTATATGGCATGTACTCATGCCTCAAAACCCGTGTATGCAACGCTTAAGATTCGGATCTATTTTTATGATTCGATTTCAAATTAATAAATTTTGAATTTTATTGAATGATTTTCGAGTACATGGTTTACATATGACCTGTCTGTCGAGAAACGAACAGCTCTAATTACATTATTAATTGAAATAACGCCTAATCGATCTAGATACAATAAAACTAAATACTTGAATCTATTTAAATATGTCGTCCCAGAAGCTGTCACTGATGTCGTCCAGACCTGGAAATTGAGGAATGCTTTGTGGAGATCCAATACTTTCCTCAGGTTGTGGTTGAATCTGATGTTGATGTGGTAGATCCTGGTGTTGGTGTAAACTAGATCCTCTACCTTTGTTATCTTGAAATAGAGGGGATTTGTTATCTCCCATATATAGACGCCATTCTCTGCCTGAGGCGCAGTGATGTATTCCCCTGTGCGTGAATCCATGGTTGCTGCAGTTGATGTGGACGTATATGGAGCAACCACAAGTACAGTCGATGCGTCTACGGCGAGTTGCTCTCTTCTTCGACGCTCTGTGTTGAATTTTGATAGAGAGGGGCTGTGAGGGTGATGAAGATAGCATTATGGAGCGTCCAGTTTTTTAAACTTGCATTTTCCTCCTTCTGGAGGAAATCTTTATAGCTGGCCCCCTCTCCTGGATTGCAAAGCACGATTGATGGGATCCCTCCTTTAATTTGAACTGGCTTTCCGTATTTACAATTTGACTGCCAATCCTTTTGGGACCCAATGAGTTCTTTCCAGTGCTTTAGCTTTAGGTAGTGCGGGGGGACGTCATCGATGACGTTATATGCCACGTCATTTGAATAAACCCTGGAATTAAAATCCAGGTGTCCACTTAAATAGTTATGGGCCCCCAACGCACGAGCCCACATCGTCTTCCCCGTTCGACTATCACCCTCGATGATGATACTAACAGGTCTCTCCGGCCGCGCAGCGGCACCTCTCCCGAAATAAGCATCAGCCCAATCTTGAATCTCGTCCGGAACGTTAGTGAATGAGGATAGTGGAAAAGGAGGAGTCCATGGCTCAGGAGCTTTTTTGAAAATTCTATCAAGGTTACTTGATAGGTTGTGATATTGGAAGAGAAACTTTTCCGGCAGCTTCTCTTTGATGATTCTCATAGCCTCTTCCTTTGTTCCAGCATTTAACGCCTCAGCTGCAGCGTCATTAGCTGTCTGTTGACCTCCTCTAGCACTTCTCCCGTCGATCTGGAACACTCCCCATTCGATGGTGTCACCGTCCTTCTCGACGTATGACTTAACATCGGAGCTGGATTTAGCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGGGATACCAGGTCGAACAGTCTGTTATTCGTGCAGTTGAACTTCCCTTTTCGATTGATAAGCACGTGGAGATGAGGGTGCCCATCGTCGTGTAGCTCTCTGCAGATCTTGATGAACTTCTTGTTAACTGGGGTTTGTAAGGCTTGTAACTGGGAAAGTGTGTCTTCTTTGGTTAATGAACATCGTGGATAAGTGATGAAATAATTTTTGGCTTTTATAGAAAAAGAACCCTTCCGTGGCATTTTTGTAAATAAGGCTATGTACCCCCAATTGGTTTGGCGTTCCCCCAATTGGTCTGGCTCTCAAAACTCTCATGAATTGGGGGAACTGGGGGAACTTATATACTAGAAGTTCCTAAGGGGCACGTGGSGSCCATCCGTTTAATATT

Gene Information

NCBI Accession YP_007438875.1
Location 261-1016
Protein Name coat protein
Coding Region ATGTCTAAGCGGGAAGCCCCGTGGCGTTCTATGGCGGGAGTTAGTAAAGTGCGGCGCTCCCTCAATTTTTCACCTCGTGGAGGTTTGGGCTCTAGGTCAAACAAGGCCATGGAGTGGGTCAACAGGCCCATGTACAAGAAGCCCAGAATTTACCGGGCCTTCAGAACTTCTGACGTCCCTCGAGGGTGTGAAGGGCCTTGCAAGGTCCAGTCCTACGAACAGCGGCACGACATCTCACATGTCGGCAAGGTGATGTGTATATCCGATGTCACCCGTGGTAACGGTATTACGCACCGTGTGGGTAAGCGATTCTGTGTTAAGTCTGTATATATTTTAGGTAAGGTATGGATGGATGAGAATATTAAGCTCAAGAACCACACGAACAGTGTTATGTTCTGGTTGGTCAGGGATCGTAGACCGTATGGTACACCAATGGATTTTGGCCAGGTGTTCAATATGTTTGACAACGAGCCCAGTACTGCAACGGTTAAGAACGATCTTCGAGATCGTTATCAGGTTATGCACAAGTTCTATGCCAAAGTAACTGGTGGACAATATGCCAGCAATGAGCAGGCTCTGGTCAAGAGGTTCTGGAAGGTCAACAATCATGTGGTGTACAATCACCAGGAGGCTGGGAAGTACGAGAATCATACGGAGAACGCTCTGTTATTGTATATGGCATGTACTCATGCCTCAAAACCCGTGTATGCAACGCTTAAGATTCGGATCTATTTTTATGATTCGATTTCAAATTAA
Protein Sequence MSKREAPWRSMAGVSKVRRSLNFSPRGGLGSRSNKAMEWVNRPMYKKPRIYRAFRTSDVPRGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGITHRVGKRFCVKSVYILGKVWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATVKNDLRDRYQVMHKFYAKVTGGQYASNEQALVKRFWKVNNHVVYNHQEAGKYENHTENALLLYMACTHASKPVYATLKIRIYFYDSISN

NCBI Accession YP_007438876.1
Location 1013-1411
Protein Name replication-enhancer protein
Coding Region ATGGATTCACGCACAGGGGAATACATCACTGCGCCTCAGGCAGAGAATGGCGTCTATATATGGGAGATAACAAATCCCCTCTATTTCAAGATAACAAAGGTAGAGGATCTAGTTTACACCAACACCAGGATCTACCACATCAACATCAGATTCAACCACAACCTGAGGAAAGTATTGGATCTCCACAAAGCATTCCTCAATTTCCAGGTCTGGACGACATCAGTGACAGCTTCTGGGACGACATATTTAAATAGATTCAAGTATTTAGTTTTATTGTATCTAGATCGATTAGGCGTTATTTCAATTAATAATGTAATTAGAGCTGTTCGTTTCTCGACAGACAGGTCATATGTAAACCATGTACTCGAAAATCATTCAATAAAATTCAAAATTTATTAA
Protein Sequence MDSRTGEYITAPQAENGVYIWEITNPLYFKITKVEDLVYTNTRIYHINIRFNHNLRKVLDLHKAFLNFQVWTTSVTASGTTYLNRFKYLVLLYLDRLGVISINNVIRAVRFSTDRSYVNHVLENHSIKFKIY

NCBI Accession YP_007438877.1
Location 1158-1547
Protein Name transactivating protein
Coding Region ATGCTATCTTCATCACCCTCACAGCCCCTCTCTATCAAAATTCAACACAGAGCGTCGAAGAAGAGAGCAACTCGCCGTAGACGCATCGACTGTACTTGTGGTTGCTCCATATACGTCCACATCAACTGCAGCAACCATGGATTCACGCACAGGGGAATACATCACTGCGCCTCAGGCAGAGAATGGCGTCTATATATGGGAGATAACAAATCCCCTCTATTTCAAGATAACAAAGGTAGAGGATCTAGTTTACACCAACACCAGGATCTACCACATCAACATCAGATTCAACCACAACCTGAGGAAAGTATTGGATCTCCACAAAGCATTCCTCAATTTCCAGGTCTGGACGACATCAGTGACAGCTTCTGGGACGACATATTTAAATAG
Protein Sequence MLSSSPSQPLSIKIQHRASKKRATRRRRIDCTCGCSIYVHINCSNHGFTHRGIHHCASGREWRLYMGDNKSPLFQDNKGRGSSLHQHQDLPHQHQIQPQPEESIGSPQSIPQFPGLDDISDSFWDDIFK

NCBI Accession YP_007438878.1
Location 1468-2544
Protein Name replication-associated protein
Coding Region ATGCCACGGAAGGGTTCTTTTTCTATAAAAGCCAAAAATTATTTCATCACTTATCCACGATGTTCATTAACCAAAGAAGACACACTTTCCCAGTTACAAGCCTTACAAACCCCAGTTAACAAGAAGTTCATCAAGATCTGCAGAGAGCTACACGACGATGGGCACCCTCATCTCCACGTGCTTATCAATCGAAAAGGGAAGTTCAACTGCACGAATAACAGACTGTTCGACCTGGTATCCCCAACCAGGTCAACACATTTCCATCCAAACATACAGGGAGCTAAATCCAGCTCCGATGTTAAGTCATACGTCGAGAAGGACGGTGACACCATCGAATGGGGAGTGTTCCAGATCGACGGGAGAAGTGCTAGAGGAGGTCAACAGACAGCTAATGACGCTGCAGCTGAGGCGTTAAATGCTGGAACAAAGGAAGAGGCTATGAGAATCATCAAAGAGAAGCTGCCGGAAAAGTTTCTCTTCCAATATCACAACCTATCAAGTAACCTTGATAGAATTTTCAAAAAAGCTCCTGAGCCATGGACTCCTCCTTTTCCACTATCCTCATTCACTAACGTTCCGGACGAGATTCAAGATTGGGCTGATGCTTATTTCGGGAGAGGTGCCGCTGCGCGGCCGGAGAGACCTGTTAGTATCATCATCGAGGGTGATAGTCGAACGGGGAAGACGATGTGGGCTCGTGCGTTGGGGGCCCATAACTATTTAAGTGGACACCTGGATTTTAATTCCAGGGTTTATTCAAATGACGTGGCATATAACGTCATCGATGACGTCCCCCCGCACTACCTAAAGCTAAAGCACTGGAAAGAACTCATTGGGTCCCAAAAGGATTGGCAGTCAAATTGTAAATACGGAAAGCCAGTTCAAATTAAAGGAGGGATCCCATCAATCGTGCTTTGCAATCCAGGAGAGGGGGCCAGCTATAAAGATTTCCTCCAGAAGGAGGAAAATGCAAGTTTAAAAAACTGGACGCTCCATAATGCTATCTTCATCACCCTCACAGCCCCTCTCTATCAAAATTCAACACAGAGCGTCGAAGAAGAGAGCAACTCGCCGTAG
Protein Sequence MPRKGSFSIKAKNYFITYPRCSLTKEDTLSQLQALQTPVNKKFIKICRELHDDGHPHLHVLINRKGKFNCTNNRLFDLVSPTRSTHFHPNIQGAKSSSDVKSYVEKDGDTIEWGVFQIDGRSARGGQQTANDAAAEALNAGTKEEAMRIIKEKLPEKFLFQYHNLSSNLDRIFKKAPEPWTPPFPLSSFTNVPDEIQDWADAYFGRGAAARPERPVSIIIEGDSRTGKTMWARALGAHNYLSGHLDFNSRVYSNDVAYNVIDDVPPHYLKLKHWKELIGSQKDWQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKDFLQKEENASLKNWTLHNAIFITLTAPLYQNSTQSVEEESNSP

NCBI Accession YP_007438879.1
Location 2130-2387
Protein Name AC4 protein
Coding Region ATGGGCACCCTCATCTCCACGTGCTTATCAATCGAAAAGGGAAGTTCAACTGCACGAATAACAGACTGTTCGACCTGGTATCCCCAACCAGGTCAACACATTTCCATCCAAACATACAGGGAGCTAAATCCAGCTCCGATGTTAAGTCATACGTCGAGAAGGACGGTGACACCATCGAATGGGGAGTGTTCCAGATCGACGGGAGAAGTGCTAGAGGAGGTCAACAGACAGCTAATGACGCTGCAGCTGAGGCGTTAA
Protein Sequence MGTLISTCLSIEKGSSTARITDCSTWYPQPGQHISIQTYRELNPAPMLSHTSRRTVTPSNGECSRSTGEVLEEVNRQLMTLQLRR