Sida mottle virus


Basic Information

Genus Begomovirus
NCBI Assembly GCF_000841285.1
Release date 2015/2/12
Submitter Fontes,E.P.B., Fernandes,A.V., Mariano,A.C., Galvao,R.M., Zerbini,F.M.
Vector
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_004637
ACCGGATGGCCGCGCGATTTTCCCCCCCCCCTCACGTGGCGCTCTGGTGGCCGCCCGATCCCCTTCTCCCCCGCTCCCGTGGTGGCCCCCTTGCTCGCGCGATGTTCTCCTTTAATTTAAATTAAAGGATTTAACTTTCGTCTGACCAATTATAGTGCGCCTGAGGAGCTTAGATAACTGTGTTAAGACTTGGTCCCTAAGTTTTATGACCCCTATAAAACTAAAGCAAGCGTGAAGTCAGTCTTTAATTCGAAATGCCTAAGCGGGATCCCTCATGGCGCCAGATGGCGGGAACCTCAAAGGTAAGCCGCTCTTCCAATTTCTCTCCTCGTGGAGGTATAGGCCCAAAGTTCAACAAGGCCTCTGAATGGGTTAACAGGCCCATGTATAGGAAGCCCAGGATATATCGGACGATCAGAACGCCTGATGTTCCTAGAGGCTGTGAAGGGCCCTGTAAGGTCCAGTCCTACGAGCAACGTCACGATATCTCCCATGTTGGGAAGGTGATGTGTATATCTGATGTGACACGCGGTAACGGTATTACTCACCGTGTCGGTAAGCGTTTCTGTGTTAAGTCTGTGTATATACTAGGTAAGATATGGATGGACGAGAATATCAAGCTCAAGAACCACACGAACAGTTGCATGTTCTGGTTGGTCCGGGACCGTAGACCGTATGGCACACCAATGGATTTCGGCCAGGTGTTCAACATGTTTGACAACGAGCCCAGCACTGCAACCGTGAAGAACGATCTCCGTGATCGTTTCCAGGTCATGCACAAGTTCTATGCCAAGGTCACGGGTGGACAGTATGCCAGCAATGAGCAGGCGCTGGTCAAGCGGTTTTGGAAGGTCAACAATCATGTGGTCTACAACCACCAGGAAGCTGGCAAGTACGAGAATCACACGGAGAACGCATTATTATTGTATATGGCATGTACCCATGCCTCTAACCCTGTGTATGCAACGCTGCAGATTCGAATCTATTTCTACGAGTCGATCACCAATTAATAAAGCTTGAATTTTATTTCATGATTTTCCAGTACATGTCTGACATATGATCTGTCAGTCGCAAAATAAACAGCCCTAAGTACATTATTAAGCGTGATGACGCCTAATTGGTCTAAATACATCATGACTAAACGTCTAAACCTAATCAAATAAGTCGTTCCAGAAGCTGTCAGAGATGTCGTCCAGACTTGGAAGTTCAGGAATGCCTTGTGGAGACCCAATGCTCTCCTGAGGTTGTGGTTGAACCGTATCTGTACGTGGTACACTCTGGTCGTCGTGTACAACAGGTCCTCTACGTGGTATATCTTGAAATACAGGGGATTTGTTATCTCCCAGATATAGACGCCATTCTCTGCTTGAGGCACAGTGATGAGTTCCCCGGTGCGTGAATCCATTGTTGCTGCAGCTGATGTGGACGTATATGGAGCACCCGCACTCTAGATCAATCCTTCTACGGCGAGTTCCTCTCTTCTTCGCCGCCCTGTGTCGTGGTTTGATAGAGGGGGGAGTCGAGGAATATGAATTTAGCATTGTGGAGTGTCCACGACTTTAGACCTGCATTCTCTTCTTTGTCGAGGAATTCTTTATAACTGACTCCCTCCCCAGGATTGCAGAGCACGATTGATGGTATTCCACCTTTAATTTGAACTGGCTTTCCGTAACTTAACAATTTGACTGCCAGTCTTTTTGAGCACCAATCAGCTCCCTTCCAGTGCTTTAACTTTAGATATTGGGGTGTGACATCATCGATGACGTTGTATTCCACTTCGTTTGAATAGACCTTAGAATTGAAGTCCAGATGTCCACTCAAGTAATTATGTGGGCCTAACGAACGAGCCCACATTGTCTTCCCTGTCCTTGAATCACCTTCGACTATCAAACTCATAGGTCTCAATGGCCGCGCAGCTGAACCCCTCCCAAAATAATCGTCCGCCCACTCTTGCATCTCGACGGGAACGTTAGTGAAGGAGGAAAGTGAAAACGGCGGAGTCCATGGCTCCGGAGCCTTTAAGAAAATCCTATCTAAATTAGAATTTAGATTGTGAAACTGAAAAAGATATTTCTCAGGCAACTTCTCCCTAATGATTTGGAGAGCCGTGTGTTTATCCGGATCATTAAACGGCTCAGCTGCAGCGTCATTAGCTGTCTGTTGTCCTCCCCTTGAACTTCTTCCGTCGACCTGGAACTGTCCCCATTCCCACTGTATCTCCCGTCCTTGTAAATGTATGACTTGACGTCGGAGCTCCATTAGCTCCTGTATGTTCGGATGGAAATGTGCTGACCTAGTTGGGGATACCAGGTCGAACAGTCGGTTATTTGTGACTTGGATTTTTCCTTCCAATTGCAACAAGATGTGGAGGTGAGGTTGCCCATCTTCATGAAGCTCTCTGCATATTTTGATGAATTTCTTATTGGAGGGTAATTGAATAGCTTGCAATTGGGAAAGTGCCTCCTCTTTTGTAAGAGGGCACTGTGGATATGTAAGGAAAATGTTTTTAGCCTGCACTCTAAAACGACGTGGTTTGGATGGCATTTTTGTAAATAAGGCTGGTACTCCGGTTGAGAGCTCGCTCATAAGTCTCTATGAAATTGGAGTATGGAGTACAATATATAGTAGGAGTTCCTAAGGGGCACGTGGCGGCCATCCGTCTAATATT

Gene Information

NCBI Accession NP_808749.1
Location 255-1010
Gene Name AV1
Protein Name coat protein CP
Coding Region ATGCCTAAGCGGGATCCCTCATGGCGCCAGATGGCGGGAACCTCAAAGGTAAGCCGCTCTTCCAATTTCTCTCCTCGTGGAGGTATAGGCCCAAAGTTCAACAAGGCCTCTGAATGGGTTAACAGGCCCATGTATAGGAAGCCCAGGATATATCGGACGATCAGAACGCCTGATGTTCCTAGAGGCTGTGAAGGGCCCTGTAAGGTCCAGTCCTACGAGCAACGTCACGATATCTCCCATGTTGGGAAGGTGATGTGTATATCTGATGTGACACGCGGTAACGGTATTACTCACCGTGTCGGTAAGCGTTTCTGTGTTAAGTCTGTGTATATACTAGGTAAGATATGGATGGACGAGAATATCAAGCTCAAGAACCACACGAACAGTTGCATGTTCTGGTTGGTCCGGGACCGTAGACCGTATGGCACACCAATGGATTTCGGCCAGGTGTTCAACATGTTTGACAACGAGCCCAGCACTGCAACCGTGAAGAACGATCTCCGTGATCGTTTCCAGGTCATGCACAAGTTCTATGCCAAGGTCACGGGTGGACAGTATGCCAGCAATGAGCAGGCGCTGGTCAAGCGGTTTTGGAAGGTCAACAATCATGTGGTCTACAACCACCAGGAAGCTGGCAAGTACGAGAATCACACGGAGAACGCATTATTATTGTATATGGCATGTACCCATGCCTCTAACCCTGTGTATGCAACGCTGCAGATTCGAATCTATTTCTACGAGTCGATCACCAATTAA
Protein Sequence MPKRDPSWRQMAGTSKVSRSSNFSPRGGIGPKFNKASEWVNRPMYRKPRIYRTIRTPDVPRGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGITHRVGKRFCVKSVYILGKIWMDENIKLKNHTNSCMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATVKNDLRDRFQVMHKFYAKVTGGQYASNEQALVKRFWKVNNHVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLQIRIYFYESITN

NCBI Accession NP_808750.1
Location 588-863
Gene Name AC5
Protein Name AC5 protein
Coding Region ATGATTGTTGACCTTCCAAAACCGCTTGACCAGCGCCTGCTCATTGCTGGCATACTGTCCACCCGTGACCTTGGCATAGAACTTGTGCATGACCTGGAAACGATCACGGAGATCGTTCTTCACGGTTGCAGTGCTGGGCTCGTTGTCAAACATGTTGAACACCTGGCCGAAATCCATTGGTGTGCCATACGGTCTACGGTCCCGGACCAACCAGAACATGCAACTGTTCGTGTGGTTCTTGAGCTTGATATTCTCGTCCATCCATATCTTACCTAG
Protein Sequence MIVDLPKPLDQRLLIAGILSTRDLGIELVHDLETITEIVLHGCSAGLVVKHVEHLAEIHWCAIRSTVPDQPEHATVRVVLELDILVHPYLT

NCBI Accession NP_808751.1
Location 1007-1405
Gene Name AC3
Protein Name replication enhancer protein Ren
Coding Region ATGGATTCACGCACCGGGGAACTCATCACTGTGCCTCAAGCAGAGAATGGCGTCTATATCTGGGAGATAACAAATCCCCTGTATTTCAAGATATACCACGTAGAGGACCTGTTGTACACGACGACCAGAGTGTACCACGTACAGATACGGTTCAACCACAACCTCAGGAGAGCATTGGGTCTCCACAAGGCATTCCTGAACTTCCAAGTCTGGACGACATCTCTGACAGCTTCTGGAACGACTTATTTGATTAGGTTTAGACGTTTAGTCATGATGTATTTAGACCAATTAGGCGTCATCACGCTTAATAATGTACTTAGGGCTGTTTATTTTGCGACTGACAGATCATATGTCAGACATGTACTGGAAAATCATGAAATAAAATTCAAGCTTTATTAA
Protein Sequence MDSRTGELITVPQAENGVYIWEITNPLYFKIYHVEDLLYTTTRVYHVQIRFNHNLRRALGLHKAFLNFQVWTTSLTASGTTYLIRFRRLVMMYLDQLGVITLNNVLRAVYFATDRSYVRHVLENHEIKFKLY

NCBI Accession NP_808752.1
Location 1152-1541
Gene Name AC2
Protein Name transactivator protein Trap
Coding Region ATGCTAAATTCATATTCCTCGACTCCCCCCTCTATCAAACCACGACACAGGGCGGCGAAGAAGAGAGGAACTCGCCGTAGAAGGATTGATCTAGAGTGCGGGTGCTCCATATACGTCCACATCAGCTGCAGCAACAATGGATTCACGCACCGGGGAACTCATCACTGTGCCTCAAGCAGAGAATGGCGTCTATATCTGGGAGATAACAAATCCCCTGTATTTCAAGATATACCACGTAGAGGACCTGTTGTACACGACGACCAGAGTGTACCACGTACAGATACGGTTCAACCACAACCTCAGGAGAGCATTGGGTCTCCACAAGGCATTCCTGAACTTCCAAGTCTGGACGACATCTCTGACAGCTTCTGGAACGACTTATTTGATTAG
Protein Sequence MLNSYSSTPPSIKPRHRAAKKRGTRRRRIDLECGCSIYVHISCSNNGFTHRGTHHCASSREWRLYLGDNKSPVFQDIPRRGPVVHDDQSVPRTDTVQPQPQESIGSPQGIPELPSLDDISDSFWNDLFD

NCBI Accession NP_808753.1
Location 1462-2544
Gene Name AC1
Protein Name replication associated protein Rep
Coding Region ATGCCATCCAAACCACGTCGTTTTAGAGTGCAGGCTAAAAACATTTTCCTTACATATCCACAGTGCCCTCTTACAAAAGAGGAGGCACTTTCCCAATTGCAAGCTATTCAATTACCCTCCAATAAGAAATTCATCAAAATATGCAGAGAGCTTCATGAAGATGGGCAACCTCACCTCCACATCTTGTTGCAATTGGAAGGAAAAATCCAAGTCACAAATAACCGACTGTTCGACCTGGTATCCCCAACTAGGTCAGCACATTTCCATCCGAACATACAGGAGCTAATGGAGCTCCGACGTCAAGTCATACATTTACAAGGACGGGAGATACAGTGGGAATGGGGACAGTTCCAGGTCGACGGAAGAAGTTCAAGGGGAGGACAACAGACAGCTAATGACGCTGCAGCTGAGCCGTTTAATGATCCGGATAAACACACGGCTCTCCAAATCATTAGGGAGAAGTTGCCTGAGAAATATCTTTTTCAGTTTCACAATCTAAATTCTAATTTAGATAGGATTTTCTTAAAGGCTCCGGAGCCATGGACTCCGCCGTTTTCACTTTCCTCCTTCACTAACGTTCCCGTCGAGATGCAAGAGTGGGCGGACGATTATTTTGGGAGGGGTTCAGCTGCGCGGCCATTGAGACCTATGAGTTTGATAGTCGAAGGTGATTCAAGGACAGGGAAGACAATGTGGGCTCGTTCGTTAGGCCCACATAATTACTTGAGTGGACATCTGGACTTCAATTCTAAGGTCTATTCAAACGAAGTGGAATACAACGTCATCGATGATGTCACACCCCAATATCTAAAGTTAAAGCACTGGAAGGGAGCTGATTGGTGCTCAAAAAGACTGGCAGTCAAATTGTTAAGTTACGGAAAGCCAGTTCAAATTAAAGGTGGAATACCATCAATCGTGCTCTGCAATCCTGGGGAGGGAGTCAGTTATAAAGAATTCCTCGACAAAGAAGAGAATGCAGGTCTAAAGTCGTGGACACTCCACAATGCTAAATTCATATTCCTCGACTCCCCCCTCTATCAAACCACGACACAGGGCGGCGAAGAAGAGAGGAACTCGCCGTAG
Protein Sequence MPSKPRRFRVQAKNIFLTYPQCPLTKEEALSQLQAIQLPSNKKFIKICRELHEDGQPHLHILLQLEGKIQVTNNRLFDLVSPTRSAHFHPNIQELMELRRQVIHLQGREIQWEWGQFQVDGRSSRGGQQTANDAAAEPFNDPDKHTALQIIREKLPEKYLFQFHNLNSNLDRIFLKAPEPWTPPFSLSSFTNVPVEMQEWADDYFGRGSAARPLRPMSLIVEGDSRTGKTMWARSLGPHNYLSGHLDFNSKVYSNEVEYNVIDDVTPQYLKLKHWKGADWCSKRLAVKLLSYGKPVQIKGGIPSIVLCNPGEGVSYKEFLDKEENAGLKSWTLHNAKFIFLDSPLYQTTTQGGEEERNSP

NCBI Accession NP_808754.1
Location 2259-2390
Gene Name AC4
Protein Name AC4 protein
Coding Region ATGAAGATGGGCAACCTCACCTCCACATCTTGTTGCAATTGGAAGGAAAAATCCAAGTCACAAATAACCGACTGTTCGACCTGGTATCCCCAACTAGGTCAGCACATTTCCATCCGAACATACAGGAGCTAA
Protein Sequence MKMGNLTSTSCCNWKEKSKSQITDCSTWYPQLGQHISIRTYRS