Sida mottle Alagoas virus
Basic Information
| Genus |
Begomovirus
|
| NCBI Assembly |
GCF_000904175.1 |
| Isolate |
Brazil |
| Release date |
2015/2/22 |
| Submitter |
Tavares,S.S., Ramos-Sobrinho,R., Gonzales-Aguilera,J., Lima,G.S.A., Assuncao,I.P., Zerbini,F.M. |
| Host |
|
| Vector |
|
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGCGATTTTTCCCCCCCCCCCCACGTGGCGCTCTCGTGGCCGCGCGATTCCCTACCTCCGCGCGCTCCCTGCTTTAATTTGAATTAAAGAAAATAACTTTCGTCTGAGCCAATCATATTGGCCCTGAGAAGCCTAGATAACTGTGACAAACTTGGTCACTAAGTTTGTGGAGTCCTATAAAATTAAAGCACGAATGACGTCAGTCTTTAATTCAGAATGCCTAAGCGGGATGCCCCGTGGCGCCTGATGGCGGGAACCTCAAAGGTCAGCCGCTCTTCTAACTTTTCTCCTCGTTCAGGTATTGGGCCAAAAATCAACAAGGCATCTGAATGGGTCAACAGGCCCATGTACAGGAAGCCCAGGATATACAGAGCGTTAAGGACGCCCGATGTTCCTAGAGGCTGTGAAGGGCCCTGTAAGGTCCAGTCGTACGAGCAGCGACATGACATCTCTCATGTCGGCAAGGTGATGTGTATATCTGATGTGACACGCGGTAACGGTATTACTCACCGTGTCGGTAAGCGTTTTTGTGTTAAGTCTGTGTATATTTTAGGTAAGATATGGATGGACGAGAATATCAAGCTCAAGAACCACACGAACAGTGTTATGTTCTGGTTGGTCAGGGATCGTAGACCGTATGGTACACCCATGGACTTTGGCCAGGTGTTTAACATGTTCGACAACGAGCCCAGCACTGCGACCGTCAAGAACGATCTCCGAGATCGTTACCAGGTCATGCACAAGTTCTATGCCAAGGTTACTGGTGGTCAATATGCCAGCAACGAACAGGCTCTGGTCAAGAGGTTCTGGAAGGTTAACAATTATGTGGTGTACAATCACCAAGAGGCTGGCAAGTACGAGAATCACACGGAGAACGCTTTATTACTGTATATGGCATGTACTCATGCCTCGAACCCTGTGTATGCTACGCTTAAGATTCGGATCTATTTTTACGATTCGATCATGAATTAATAAAAGTTGAATTTTATTGAATGATTTTCCAGTACCTGATTTACATATGAACGGTCTGTTGCGAAACGAACAGCCCTAATAACATTATTAAGACCAATAACTCCTAATTGATCTAAGTACATCATGACTAGATGTCTAAATCTAGCTAAATAAGTCGTCCCAGAAGCTGTCATTGATGTCGTCCAGACTTGGAAGTTGAGGAATGCCTTGTGGAGATCCAATGCTCTCCTCAGGTTGTGGTTGAACCTTATCTGGATGTGGTACACTCTTGTCCTGGTGTACGGTGGATCCTCTACCCTGATTATCTTGAAATAGAGGGGATTTGTTATTTCCCAGATATAGACGCCATTCTCTGCCTGAGGTGCAGTGATGAGTTCCCCTGTGCGTGAATCCATGTCCTGTGCAGTTGAGATGCTGGTATATGGAGCAGCCGCAGTCAAGATCAACTCGTCGTCGCCTGACTGCTCTCTTCTTGGCAATCCTGTGTCGTGGTTTGATAGAGGGGGGAGTTGAGGAAGATGAATTTAGCATTGTGGAGTGTCCAAGCCTTTAGTGATGCATTTTCCTCTTTGTCGAGGAAATCTTTATAGCTAGCCCCCTCTCCAGGATTGCAGAGCACGATTGATGGGATACCCCCTTTAATTTGAACAGGCTTTCCGTATTTGCAATTTGACTGCCAGTCTTTTTGAGCACCAATCAGTTCCTTCCAGTGCTTTAACTTTAGATAATGCGGGGTGACATCATCGATGACGTTGTACTCAGCGTCGTCTGAGTAAATTCTTGGATTGAAGTCCAGGTGTCCACTCAGATAATTATGTGGGCCTAACGCACGAGCCCACATTGTCTTCCCCGTTCGAGAGTCACCCTCTACAATTAAACTTATGGGTCTTTCTGGCCGCGCAGCGGCACCTCTCCCAAAATAATCGTCAGCCCACTCCTGCATCTCGTCGGGAACGTTAGTGAAGGAGCAGAGAAGTGACGGAGGAGCCCATGGTTCCGGAGCCTTGGAAAAAATCCTATCTAGGTTTGAATTAAGATTATGGAACTGAAATAAGTATTTTTCAGGGATTTTTTCCTTTATTATTTGAAGAGCAGCTTCTTTTGTAGCTGCGTTTAATGCCTCTGCTGCAGCGTCGTTAGACGTTTGGCAACCTCCTCTAGCACTTCTGCCGTCGACCTGGAATTCTCCCCATTCCATGGTGTCTCCGTCTTTCTCGACGTAGGACTTGACGTCGGACGATGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTTGTTGGGGACACCATGTCGAAGAATCTGTTATTCGTGCATTGGAATTTCCCTTCGAACTGGAGGAGGACGTGGAGATGAGGCTCCCCATCGTCGTGAAGCTCTCTGCAGATTTTGATGAATTTCTTGTTAACTGGTGTTTTTAGGTTGAGGATTTGGGAAAGTGCTTCTTCTTTGGTTAAAGAACACCGTGGAAATGTGAGGAAATAGTTTTTGGCTTTTATGCAGAAAGAACCCTTCCGTGGCATTTTTGTAAATAAGGCAGTGTACCCCCGATTGGTTTCGGCTCTAAAACTTATATGAATTGGGGGTACTGGGGGTTCATTTATACTATAACTTCCTAATGGGCATAGGGGGCAACGTGGCGGCCATCCGCTATAATATT
Gene Information
|
NCBI Accession
|
YP_007438880.1
|
|
Location
|
229-984 |
|
Protein Name
|
coat protein |
|
Coding Region
|
ATGCCTAAGCGGGATGCCCCGTGGCGCCTGATGGCGGGAACCTCAAAGGTCAGCCGCTCTTCTAACTTTTCTCCTCGTTCAGGTATTGGGCCAAAAATCAACAAGGCATCTGAATGGGTCAACAGGCCCATGTACAGGAAGCCCAGGATATACAGAGCGTTAAGGACGCCCGATGTTCCTAGAGGCTGTGAAGGGCCCTGTAAGGTCCAGTCGTACGAGCAGCGACATGACATCTCTCATGTCGGCAAGGTGATGTGTATATCTGATGTGACACGCGGTAACGGTATTACTCACCGTGTCGGTAAGCGTTTTTGTGTTAAGTCTGTGTATATTTTAGGTAAGATATGGATGGACGAGAATATCAAGCTCAAGAACCACACGAACAGTGTTATGTTCTGGTTGGTCAGGGATCGTAGACCGTATGGTACACCCATGGACTTTGGCCAGGTGTTTAACATGTTCGACAACGAGCCCAGCACTGCGACCGTCAAGAACGATCTCCGAGATCGTTACCAGGTCATGCACAAGTTCTATGCCAAGGTTACTGGTGGTCAATATGCCAGCAACGAACAGGCTCTGGTCAAGAGGTTCTGGAAGGTTAACAATTATGTGGTGTACAATCACCAAGAGGCTGGCAAGTACGAGAATCACACGGAGAACGCTTTATTACTGTATATGGCATGTACTCATGCCTCGAACCCTGTGTATGCTACGCTTAAGATTCGGATCTATTTTTACGATTCGATCATGAATTAA |
|
Protein Sequence
|
MPKRDAPWRLMAGTSKVSRSSNFSPRSGIGPKINKASEWVNRPMYRKPRIYRALRTPDVPRGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGITHRVGKRFCVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATVKNDLRDRYQVMHKFYAKVTGGQYASNEQALVKRFWKVNNYVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSIMN |
|
NCBI Accession
|
YP_007438881.1
|
|
Location
|
981-1379 |
|
Protein Name
|
replication-enhancer protein |
|
Coding Region
|
ATGGATTCACGCACAGGGGAACTCATCACTGCACCTCAGGCAGAGAATGGCGTCTATATCTGGGAAATAACAAATCCCCTCTATTTCAAGATAATCAGGGTAGAGGATCCACCGTACACCAGGACAAGAGTGTACCACATCCAGATAAGGTTCAACCACAACCTGAGGAGAGCATTGGATCTCCACAAGGCATTCCTCAACTTCCAAGTCTGGACGACATCAATGACAGCTTCTGGGACGACTTATTTAGCTAGATTTAGACATCTAGTCATGATGTACTTAGATCAATTAGGAGTTATTGGTCTTAATAATGTTATTAGGGCTGTTCGTTTCGCAACAGACCGTTCATATGTAAATCAGGTACTGGAAAATCATTCAATAAAATTCAACTTTTATTAA |
|
Protein Sequence
|
MDSRTGELITAPQAENGVYIWEITNPLYFKIIRVEDPPYTRTRVYHIQIRFNHNLRRALDLHKAFLNFQVWTTSMTASGTTYLARFRHLVMMYLDQLGVIGLNNVIRAVRFATDRSYVNQVLENHSIKFNFY |
|
NCBI Accession
|
YP_007438882.1
|
|
Location
|
1126-1515 |
|
Protein Name
|
transactivating protein |
|
Coding Region
|
ATGCTAAATTCATCTTCCTCAACTCCCCCCTCTATCAAACCACGACACAGGATTGCCAAGAAGAGAGCAGTCAGGCGACGACGAGTTGATCTTGACTGCGGCTGCTCCATATACCAGCATCTCAACTGCACAGGACATGGATTCACGCACAGGGGAACTCATCACTGCACCTCAGGCAGAGAATGGCGTCTATATCTGGGAAATAACAAATCCCCTCTATTTCAAGATAATCAGGGTAGAGGATCCACCGTACACCAGGACAAGAGTGTACCACATCCAGATAAGGTTCAACCACAACCTGAGGAGAGCATTGGATCTCCACAAGGCATTCCTCAACTTCCAAGTCTGGACGACATCAATGACAGCTTCTGGGACGACTTATTTAGCTAG |
|
Protein Sequence
|
MLNSSSSTPPSIKPRHRIAKKRAVRRRRVDLDCGCSIYQHLNCTGHGFTHRGTHHCTSGREWRLYLGNNKSPLFQDNQGRGSTVHQDKSVPHPDKVQPQPEESIGSPQGIPQLPSLDDINDSFWDDLFS |
|
NCBI Accession
|
YP_007438883.1
|
|
Location
|
1427-2512 |
|
Protein Name
|
replication-associated protein |
|
Coding Region
|
ATGCCACGGAAGGGTTCTTTCTGCATAAAAGCCAAAAACTATTTCCTCACATTTCCACGGTGTTCTTTAACCAAAGAAGAAGCACTTTCCCAAATCCTCAACCTAAAAACACCAGTTAACAAGAAATTCATCAAAATCTGCAGAGAGCTTCACGACGATGGGGAGCCTCATCTCCACGTCCTCCTCCAGTTCGAAGGGAAATTCCAATGCACGAATAACAGATTCTTCGACATGGTGTCCCCAACAAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCATCGTCCGACGTCAAGTCCTACGTCGAGAAAGACGGAGACACCATGGAATGGGGAGAATTCCAGGTCGACGGCAGAAGTGCTAGAGGAGGTTGCCAAACGTCTAACGACGCTGCAGCAGAGGCATTAAACGCAGCTACAAAAGAAGCTGCTCTTCAAATAATAAAGGAAAAAATCCCTGAAAAATACTTATTTCAGTTCCATAATCTTAATTCAAACCTAGATAGGATTTTTTCCAAGGCTCCGGAACCATGGGCTCCTCCGTCACTTCTCTGCTCCTTCACTAACGTTCCCGACGAGATGCAGGAGTGGGCTGACGATTATTTTGGGAGAGGTGCCGCTGCGCGGCCAGAAAGACCCATAAGTTTAATTGTAGAGGGTGACTCTCGAACGGGGAAGACAATGTGGGCTCGTGCGTTAGGCCCACATAATTATCTGAGTGGACACCTGGACTTCAATCCAAGAATTTACTCAGACGACGCTGAGTACAACGTCATCGATGATGTCACCCCGCATTATCTAAAGTTAAAGCACTGGAAGGAACTGATTGGTGCTCAAAAAGACTGGCAGTCAAATTGCAAATACGGAAAGCCTGTTCAAATTAAAGGGGGTATCCCATCAATCGTGCTCTGCAATCCTGGAGAGGGGGCTAGCTATAAAGATTTCCTCGACAAAGAGGAAAATGCATCACTAAAGGCTTGGACACTCCACAATGCTAAATTCATCTTCCTCAACTCCCCCCTCTATCAAACCACGACACAGGATTGCCAAGAAGAGAGCAGTCAGGCGACGACGAGTTGA |
|
Protein Sequence
|
MPRKGSFCIKAKNYFLTFPRCSLTKEEALSQILNLKTPVNKKFIKICRELHDDGEPHLHVLLQFEGKFQCTNNRFFDMVSPTRSAHFHPNIQGAKSSSDVKSYVEKDGDTMEWGEFQVDGRSARGGCQTSNDAAAEALNAATKEAALQIIKEKIPEKYLFQFHNLNSNLDRIFSKAPEPWAPPSLLCSFTNVPDEMQEWADDYFGRGAAARPERPISLIVEGDSRTGKTMWARALGPHNYLSGHLDFNPRIYSDDAEYNVIDDVTPHYLKLKHWKELIGAQKDWQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKDFLDKEENASLKAWTLHNAKFIFLNSPLYQTTTQDCQEESSQATTS |
|
NCBI Accession
|
YP_007438884.1
|
|
Location
|
2098-2355 |
|
Protein Name
|
AC4 protein |
|
Coding Region
|
ATGGGGAGCCTCATCTCCACGTCCTCCTCCAGTTCGAAGGGAAATTCCAATGCACGAATAACAGATTCTTCGACATGGTGTCCCCAACAAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCATCGTCCGACGTCAAGTCCTACGTCGAGAAAGACGGAGACACCATGGAATGGGGAGAATTCCAGGTCGACGGCAGAAGTGCTAGAGGAGGTTGCCAAACGTCTAACGACGCTGCAGCAGAGGCATTAA |
|
Protein Sequence
|
MGSLISTSSSSSKGNSNARITDSSTWCPQQGQHISIRTFRELNHRPTSSPTSRKTETPWNGENSRSTAEVLEEVAKRLTTLQQRH |