Sida golden mosaic Lara virus
Basic Information
| Genus |
Begomovirus
|
| NCBI Assembly |
GCF_002823385.1 |
| Isolate |
Venezuela:Lara |
| Release date |
2018/8/25 |
| Submitter |
Zambrano,K.A., Marys,E.E., Mendez,N. |
| Vector |
|
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGCGATTTTTGGTGTCCCCCCCTACGTGGCGCTCTGGTGGCCGCGCGATCTCATGGTGCCCTCCCTTTAATTTGAATTAAAGGAAATATCTTTTGTATCGTCCAATGATAATGCGTCTGACAAGCCTAAATATTCTCAACAACTTGGGCCCTAAGTTGTTGGGTCGGCTATATATGAAAAGCTTATTGGGCCACAATATTTAATTCAAAATGACTAAGCGGGATGCCTCATGGCGTTCTATGGCGGGAATCTCAAAGGTTAGACGCACTCTGAATTTCTCTCCTCGTGGAGTTGGTGGCCCAAAGTTAAACAAGGCCTCTGAATGGGTCAACAGGCCCATGTACAGGAAACCCATGATCTACAGGACTCTTAGGACTCCCGACGTCCCAAGAGGGTGTGAAGGCCCGTGCAAGGTCCAGTCATACGAACAGCGTCATGACATCTCACATGTTGGCAAGGTGATGTGTATATCTGACGTCACACGTGGTAATGGTATTACTCACCGTGTTGGCAAGCGTTTTTGTGTTAAGTCTGTATATATTTTAGGGAAAGTATGGATGGACGAGAACATCAAGTTGAAGAACCACACGAACAGCGTCATGTTCTGGTTAGTCAGAGATAGAAGACCCTATGGCACCCCTATGGACTTTGGCCAAGTGTTCAACATGTTTGACAACGAGCCTAGTACTGCCACGGTCAAGAACGATCTACGTGATCGTTATCAGGTAATGCACAAGTTCCATGCCAAAGTCACTGGTGGTCAATATGCCAGCAATGAACAGGCTATTGTGAAGCGATTCTGGAAGATCAACAATCATGTGGTCTACAATCATCAGGAAGCTGGCAAATATGAGAATCACACTGAGAACGCTTTGTTATTGTATATGGCATGTACACATGCCTCTAACCCTGTGTATGCAACTCTTAAGATTCGAATCTATTTTTATGATTCGATTATGAATTAATAAAATTTAAATTTTATTTCATGATTTTCAATTACATAATTTACATACACTCGCTCAGTTGCGAAATGAACAGCTCTAATTACATTGTTTAGCGAAATCACTCCTATATCATCTAAATACACATTGACTAAATGTCTAAACCTATTTAAATAAGTCGACCCAGAAGCTGTCATCGATGTCGTCCAGACTTGGAAGTTCAGGTAGGCTTTGTGGAGACCCAACGCTTTCCTCAGGTTGTGGTTGAACCGTATCTGGACGGTATATATTCTGGTCCTCGTGTATTGCAAGTCCTCTACTCTGTTTATCCTGAAATAGAGGGGATTTTCTATCTCCCAGATATAAACGCCATTCTCTGCCTGAGGTGCAGTGATGAGTTCCCCTGTGCGTGAATCCATGTCCCGTGCAGCCTATGTGGAAGTAGATGGAGCAACCGCACTCTAGATCAATTCTCCGTCGCCTGATGGCCCTCTTCTTGGCTTGCCTGTGTGCCTTCTTGATAGAGGGGGGAGTCGAGGGTGATGAACAGCGCATTCTTGAGAGTCCAATGTCTTAATGCTGAATTTTCCTCTTTGTTGAGGAAATCTTTATAGCTGGAACCCTCGCCAGGATTGCAAAGCACGATTGATGGGATACCGCCTTTAATTTGAACTGGCTTGCCGTACTTACAATTTGACTGCCAGTCTTTTTGGGCCCCCATCAATTCTTTCCAGTGCTTTAGCTTTAGATAATGCGGTGCAACGTCATCMATGACATTATACTCAACTTTGTTTGAGTAGACTCTGGAATTGAAGTCTAGGTGACCACTGAGATAATTATGTGGGCCTAAAGCTCGAGCCCACATTGTCTTCCCTGTCCTCGAGTCACCTTCAACAATCAAACTAACAGGTCTCTCCGGCCGCGCCAGCGGGCTTGTTCCGAAATAACTATCTGCCCATGCTTGCATCTCTTCTGGCACGTTAGTGAATGACGAGAGTTGAAACGGAGGAACCCATGGCTCCGGAGCCTTGACAAAGAGGCGTTCAATATTGGCCTTTAAGTTGTGATAACTCACCAAGAACGTTTTTGGATCTCCAGCTTTGATAATGTCAAGAGCCTCTCCCACACTTGTTGCATTGACGGCGTTGTGATAAACGTCGTCTTTGTTTGACTTGGAACCCCCAGAAACCTTGTATTGTCCGGATTCACAATAATCACCCTCCTTGGTGATGTAATTCTTGACGGCATTGGTGTCATTGGCTGACTGGATATTGGGGTGACATGGTGTAGATCTTCTGGGGTGATTAAGGTCAAAGAATCTGGCATTCTTGATGTTTGACTTCCCTGATAACTGGATGAGACAGTGGAGGTGTGGGAAGCCGTCATGATGTTCCTCTCGTGCGACTCTGATGTACGTTGGTTTGACGACTGACCACGGCAAGGTTTGAAGCATTTGAAGAGCTTCATCTTTGGCTATGTCGCACTGGGGATATGTTAAGAAAATATTTCTGGCTGCTAACCTAAATGATTTTGGCTCTCGTGGCATTTTTGTAATAATGGCTTAGGACACCGCTGGTGTCTCTCAACTTCTGTGCTATAATGTGGTGTCTTGGTGTCCCATTTATACATAAAGCCTTCTGGGTAACTCCAGGGGCAAAAGCGGCCATCCGCAATAATATT
Gene Information
|
NCBI Accession
|
YP_009506476.1
|
|
Location
|
222-977 |
|
Gene Name
|
AV1 |
|
Protein Name
|
CP |
|
Coding Region
|
ATGACTAAGCGGGATGCCTCATGGCGTTCTATGGCGGGAATCTCAAAGGTTAGACGCACTCTGAATTTCTCTCCTCGTGGAGTTGGTGGCCCAAAGTTAAACAAGGCCTCTGAATGGGTCAACAGGCCCATGTACAGGAAACCCATGATCTACAGGACTCTTAGGACTCCCGACGTCCCAAGAGGGTGTGAAGGCCCGTGCAAGGTCCAGTCATACGAACAGCGTCATGACATCTCACATGTTGGCAAGGTGATGTGTATATCTGACGTCACACGTGGTAATGGTATTACTCACCGTGTTGGCAAGCGTTTTTGTGTTAAGTCTGTATATATTTTAGGGAAAGTATGGATGGACGAGAACATCAAGTTGAAGAACCACACGAACAGCGTCATGTTCTGGTTAGTCAGAGATAGAAGACCCTATGGCACCCCTATGGACTTTGGCCAAGTGTTCAACATGTTTGACAACGAGCCTAGTACTGCCACGGTCAAGAACGATCTACGTGATCGTTATCAGGTAATGCACAAGTTCCATGCCAAAGTCACTGGTGGTCAATATGCCAGCAATGAACAGGCTATTGTGAAGCGATTCTGGAAGATCAACAATCATGTGGTCTACAATCATCAGGAAGCTGGCAAATATGAGAATCACACTGAGAACGCTTTGTTATTGTATATGGCATGTACACATGCCTCTAACCCTGTGTATGCAACTCTTAAGATTCGAATCTATTTTTATGATTCGATTATGAATTAA |
|
Protein Sequence
|
MTKRDASWRSMAGISKVRRTLNFSPRGVGGPKLNKASEWVNRPMYRKPMIYRTLRTPDVPRGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGITHRVGKRFCVKSVYILGKVWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATVKNDLRDRYQVMHKFHAKVTGGQYASNEQAIVKRFWKINNHVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSIMN |
|
NCBI Accession
|
YP_009506477.1
|
|
Location
|
974-1372 |
|
Gene Name
|
AC3 |
|
Protein Name
|
Ren |
|
Coding Region
|
ATGGATTCACGCACAGGGGAACTCATCACTGCACCTCAGGCAGAGAATGGCGTTTATATCTGGGAGATAGAAAATCCCCTCTATTTCAGGATAAACAGAGTAGAGGACTTGCAATACACGAGGACCAGAATATATACCGTCCAGATACGGTTCAACCACAACCTGAGGAAAGCGTTGGGTCTCCACAAAGCCTACCTGAACTTCCAAGTCTGGACGACATCGATGACAGCTTCTGGGTCGACTTATTTAAATAGGTTTAGACATTTAGTCAATGTGTATTTAGATGATATAGGAGTGATTTCGCTAAACAATGTAATTAGAGCTGTTCATTTCGCAACTGAGCGAGTGTATGTAAATTATGTAATTGAAAATCATGAAATAAAATTTAAATTTTATTAA |
|
Protein Sequence
|
MDSRTGELITAPQAENGVYIWEIENPLYFRINRVEDLQYTRTRIYTVQIRFNHNLRKALGLHKAYLNFQVWTTSMTASGSTYLNRFRHLVNVYLDDIGVISLNNVIRAVHFATERVYVNYVIENHEIKFKFY |
|
NCBI Accession
|
YP_009506478.1
|
|
Location
|
1119-1508 |
|
Gene Name
|
AC2 |
|
Protein Name
|
TrAP |
|
Coding Region
|
ATGCGCTGTTCATCACCCTCGACTCCCCCCTCTATCAAGAAGGCACACAGGCAAGCCAAGAAGAGGGCCATCAGGCGACGGAGAATTGATCTAGAGTGCGGTTGCTCCATCTACTTCCACATAGGCTGCACGGGACATGGATTCACGCACAGGGGAACTCATCACTGCACCTCAGGCAGAGAATGGCGTTTATATCTGGGAGATAGAAAATCCCCTCTATTTCAGGATAAACAGAGTAGAGGACTTGCAATACACGAGGACCAGAATATATACCGTCCAGATACGGTTCAACCACAACCTGAGGAAAGCGTTGGGTCTCCACAAAGCCTACCTGAACTTCCAAGTCTGGACGACATCGATGACAGCTTCTGGGTCGACTTATTTAAATAG |
|
Protein Sequence
|
MRCSSPSTPPSIKKAHRQAKKRAIRRRRIDLECGCSIYFHIGCTGHGFTHRGTHHCTSGREWRLYLGDRKSPLFQDKQSRGLAIHEDQNIYRPDTVQPQPEESVGSPQSLPELPSLDDIDDSFWVDLFK |
|
NCBI Accession
|
YP_009506479.1
|
|
Location
|
1420-2499 |
|
Gene Name
|
AC1 |
|
Protein Name
|
Rep |
|
Coding Region
|
ATGCCACGAGAGCCAAAATCATTTAGGTTAGCAGCCAGAAATATTTTCTTAACATATCCCCAGTGCGACATAGCCAAAGATGAAGCTCTTCAAATGCTTCAAACCTTGCCGTGGTCAGTCGTCAAACCAACGTACATCAGAGTCGCACGAGAGGAACATCATGACGGCTTCCCACACCTCCACTGTCTCATCCAGTTATCAGGGAAGTCAAACATCAAGAATGCCAGATTCTTTGACCTTAATCACCCCAGAAGATCTACACCATGTCACCCCAATATCCAGTCAGCCAATGACACCAATGCCGTCAAGAATTACATCACCAAGGAGGGTGATTATTGTGAATCCGGACAATACAAGGTTTCTGGGGGTTCCAAGTCAAACAAAGACGACGTTTATCACAACGCCGTCAATGCAACAAGTGTGGGAGAGGCTCTTGACATTATCAAAGCTGGAGATCCAAAAACGTTCTTGGTGAGTTATCACAACTTAAAGGCCAATATTGAACGCCTCTTTGTCAAGGCTCCGGAGCCATGGGTTCCTCCGTTTCAACTCTCGTCATTCACTAACGTGCCAGAAGAGATGCAAGCATGGGCAGATAGTTATTTCGGAACAAGCCCGCTGGCGCGGCCGGAGAGACCTGTTAGTTTGATTGTTGAAGGTGACTCGAGGACAGGGAAGACAATGTGGGCTCGAGCTTTAGGCCCACATAATTATCTCAGTGGTCACCTAGACTTCAATTCCAGAGTCTACTCAAACAAAGTTGAGTATAATGTCATKGATGACGTTGCACCGCATTATCTAAAGCTAAAGCACTGGAAAGAATTGATGGGGGCCCAAAAAGACTGGCAGTCAAATTGTAAGTACGGCAAGCCAGTTCAAATTAAAGGCGGTATCCCATCAATCGTGCTTTGCAATCCTGGCGAGGGTTCCAGCTATAAAGATTTCCTCAACAAAGAGGAAAATTCAGCATTAAGACATTGGACTCTCAAGAATGCGCTGTTCATCACCCTCGACTCCCCCCTCTATCAAGAAGGCACACAGGCAAGCCAAGAAGAGGGCCATCAGGCGACGGAGAATTGA |
|
Protein Sequence
|
MPREPKSFRLAARNIFLTYPQCDIAKDEALQMLQTLPWSVVKPTYIRVAREEHHDGFPHLHCLIQLSGKSNIKNARFFDLNHPRRSTPCHPNIQSANDTNAVKNYITKEGDYCESGQYKVSGGSKSNKDDVYHNAVNATSVGEALDIIKAGDPKTFLVSYHNLKANIERLFVKAPEPWVPPFQLSSFTNVPEEMQAWADSYFGTSPLARPERPVSLIVEGDSRTGKTMWARALGPHNYLSGHLDFNSRVYSNKVEYNVXDDVAPHYLKLKHWKELMGAQKDWQSNCKYGKPVQIKGGIPSIVLCNPGEGSSYKDFLNKEENSALRHWTLKNALFITLDSPLYQEGTQASQEEGHQATEN |
|
NCBI Accession
|
YP_009506480.1
|
|
Location
|
2025-2420 |
|
Gene Name
|
AC4 |
|
Protein Name
|
AC4 |
|
Coding Region
|
ATGAAGCTCTTCAAATGCTTCAAACCTTGCCGTGGTCAGTCGTCAAACCAACGTACATCAGAGTCGCACGAGAGGAACATCATGACGGCTTCCCACACCTCCACTGTCTCATCCAGTTATCAGGGAAGTCAAACATCAAGAATGCCAGATTCTTTGACCTTAATCACCCCAGAAGATCTACACCATGTCACCCCAATATCCAGTCAGCCAATGACACCAATGCCGTCAAGAATTACATCACCAAGGAGGGTGATTATTGTGAATCCGGACAATACAAGGTTTCTGGGGGTTCCAAGTCAAACAAAGACGACGTTTATCACAACGCCGTCAATGCAACAAGTGTGGGAGAGGCTCTTGACATTATCAAAGCTGGAGATCCAAAAACGTTCTTGGTGA |
|
Protein Sequence
|
MKLFKCFKPCRGQSSNQRTSESHERNIMTASHTSTVSSSYQGSQTSRMPDSLTLITPEDLHHVTPISSQPMTPMPSRITSPRRVIIVNPDNTRFLGVPSQTKTTFITTPSMQQVWERLLTLSKLEIQKRSW |