Sida golden mosaic Braco virus


Basic Information

Genus Begomovirus
NCBI Assembly GCF_002823345.1
Isolate Jamaica
Release date 2018/8/25
Submitter Martin,D.P., Stewart,C.S., Kon,T., Gilbertson,R.L., Roye,M.E.
Vector
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_038458
ACCGGATGGCCGCGCGATTTTTCCGCCTTTTACTTTCCACGCGCGCCCCGCTTTTCTCACTCGCGCTATCGTCCAATCATATTGCGCCTGCCGCGCCTAATTAATTTAAACAACTTGGGCCCTAAGTTGTTGTCTGGGCCTATAAAGGAAAAGCGGGTTTGGGCCACAGTCTTTAATTCAAAATGACTAAGCGCGATTCATCTTGGCGCTCGATTGCTGGAACCTCAAAGGTTCGTCGCACGTTGAATTTCTCCCCACGTGGAGGTGGTGGCCCAAAACAGACACGGGCCTCAGAATGGGTTAATAGGCCTATGTACAGGAAGCCCTTGATCTATCGGACTTTACGGACGCCCGACGTGCCCAGAGGTTGCGAAGGCCCGTGTAAGGTACAGTCCTATGAACAGCGTCATGATATCTCCCACGTCGGCAAGGTGATGTGTATTTCTGATGTCACTCGTGGTAATGGCATTACCCACCGTGTGGGTAAGCGTTTTTGTGTTAAGTCTGTGTATATTTTAGGTAAGATATGGATGGATGAGAACATCAAGCTCAAGAACCACACGAACAGTGTTATGTTCTGGTTGGTCAGGGACCGTCGACCATATGGCACTCCAATGGACTTTGGCCAAGTGTTCAACATGTATGACAATGAGCCCAGTACTGCCACTGTGAAAAACGATCTCAGGGATCGTTACCAGGTTATGCATAGGTTCTACGGCAAGGTCACAGGTGGTCAATATGCTAGCAACGAGCAGGCTTTGGTCAGGCGTTTCTGGAAGGTCAACAACCATGTGGTTTACAACCACCAAGAGGCTGGCAAGTACGAGAATCACACTGAGAACGCGTTGTTATTGTATATGGCATGTACACATGCTTCTAACCCCGTGTATGCGACATTGAAAATTCGAATCTATTTTTATGATTCGATAACAAATTAATAAAATTTGAATTTTATTTCATGATGTTCAATTACATAACTTACATGCGCATTGTCTGTTGCGAACTGCACAGCTCTAATTACATTGTTAATGGAAATTACGCCTAAGTTGTCTAAGTACATATTGACTAACCGTCTAAACCTAACTAAATAAGTTGACCCAGAAGCTGTCATCGATTTCGTCCAGACTTGGAAGTTCAGGTAGGCTTTGTGGAGACCCAACACTCTCCTCAGGTTGTGGTTGAATCGTATCTGGACGTGGTACACTCTGGTCCTGGTGTATAGTAGTTCCTCTACTCTGTCTATCTTGAAATACAGGGGATTTTCTATCTCCCAGATATAGACGCCATTCTCTGCCTGACGTGCAGTGATGAGTTCCCCTGTGCGTGAATCCATGACCTGTACAGCCTATGTGGAGGTATATGGAGCACCCGCAATCTAAATCAATCCTGCGTCTCCTGATGGCCCGCCTCTTGGCTTGCCTGTGTGCCTTCTTGATACAAGGGGGCTGTGAGGGTGATGAATTTAGCATTCTTGATAGTCCAATTCTTGAGAGCTGAGTTTTCAGCTTTGTCCAGGAATTCTTTATAGCTGGCACCCTCACCAGGATTGCAAAGCACGATTGATGGGATCCCTCCTTTAATTTGAACTGGCTTGCCGTATTTGCAATTTGACTGCCAGTCCTTCTGGGCCCCCAGAAGTTCTTTCCAGTGCTTTAGCTTTAGATATTGCGGTGCGACGTCATCGATGACGTTATATTCCACTTCATTTGAATAGACTCTGGAATTGAAGTCTAGGTGTCCACTGAGGTAATTATGTGGGCCTAACGCACGAGCCCACATCGTCTTCCCTGTCCTTGAATCACCTTCTACTATGATACTCACAGGCCTCTCCGGCCGCGCAGCGGCACCTCTGCCGAAATAGTCATCAGCCCATTGTTGCATCTCGGCCGGTACCTTTGTGAAAGAGGAGAGGTGATATGGAGGAGTCCATGGCTCATGAACCTTTGCGAAGATTCTATCCAAATTACTTGATAAGTTATGATATTGGAATAGAAATTTTTCTGGTAATTTCTCTTTTATGATTTGCATGGCCTCCTCCTTTGTTCCAGAGTTCAACGCTTCAGCAGCTGCGTCATTAGCTGATTGTTGACCGCCTCGAGCACTTCTACCGTCGATCTGGAACACTCCCCATTCAATGGTGTCCCCGTCCTTTGCGATGTAGGACTTGACGTCGGAACTGGATTTAGCTCCCTGAATGTTTGGATGGAAATGTGTTGACCTGTTTGGGGACACCAAGTCGAAGAATCTGTTATTTGTGCACTGGTATTTACCCTCGAACTGAACAAGCACGTGGAGATGAGGGTTCCCATTTTGATGAAGTTCTCTGCAGATTTTGATGAACTTCTTGTTCACGGGTGTAGAAAGATTTTGTAATTGGGAAAGTGCTTCTTCTTTGGTTAAAGAGCAGTCTGGATAAGTGATGAAATAGTTTTTGGCTTTAACATAGAAAGAACCCTTTCGTGGCATTTTTGTAATAAGATGTGTGTACCCCCAATAGCTATCTCGCTCAAATTCCTATGAATTGGGGGTACTAGGGGTACATTTATATTAGAAGTTCCATGGGTTAGATCAGACACGTGGCGGCCATCCGATATAATATT

Gene Information

NCBI Accession YP_009506471.1
Location 183-938
Gene Name CP
Protein Name coat protein
Coding Region ATGACTAAGCGCGATTCATCTTGGCGCTCGATTGCTGGAACCTCAAAGGTTCGTCGCACGTTGAATTTCTCCCCACGTGGAGGTGGTGGCCCAAAACAGACACGGGCCTCAGAATGGGTTAATAGGCCTATGTACAGGAAGCCCTTGATCTATCGGACTTTACGGACGCCCGACGTGCCCAGAGGTTGCGAAGGCCCGTGTAAGGTACAGTCCTATGAACAGCGTCATGATATCTCCCACGTCGGCAAGGTGATGTGTATTTCTGATGTCACTCGTGGTAATGGCATTACCCACCGTGTGGGTAAGCGTTTTTGTGTTAAGTCTGTGTATATTTTAGGTAAGATATGGATGGATGAGAACATCAAGCTCAAGAACCACACGAACAGTGTTATGTTCTGGTTGGTCAGGGACCGTCGACCATATGGCACTCCAATGGACTTTGGCCAAGTGTTCAACATGTATGACAATGAGCCCAGTACTGCCACTGTGAAAAACGATCTCAGGGATCGTTACCAGGTTATGCATAGGTTCTACGGCAAGGTCACAGGTGGTCAATATGCTAGCAACGAGCAGGCTTTGGTCAGGCGTTTCTGGAAGGTCAACAACCATGTGGTTTACAACCACCAAGAGGCTGGCAAGTACGAGAATCACACTGAGAACGCGTTGTTATTGTATATGGCATGTACACATGCTTCTAACCCCGTGTATGCGACATTGAAAATTCGAATCTATTTTTATGATTCGATAACAAATTAA
Protein Sequence MTKRDSSWRSIAGTSKVRRTLNFSPRGGGGPKQTRASEWVNRPMYRKPLIYRTLRTPDVPRGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGITHRVGKRFCVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMYDNEPSTATVKNDLRDRYQVMHRFYGKVTGGQYASNEQALVRRFWKVNNHVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSITN

NCBI Accession YP_009506472.1
Location 935-1333
Gene Name REn
Protein Name replication enhancer
Coding Region ATGGATTCACGCACAGGGGAACTCATCACTGCACGTCAGGCAGAGAATGGCGTCTATATCTGGGAGATAGAAAATCCCCTGTATTTCAAGATAGACAGAGTAGAGGAACTACTATACACCAGGACCAGAGTGTACCACGTCCAGATACGATTCAACCACAACCTGAGGAGAGTGTTGGGTCTCCACAAAGCCTACCTGAACTTCCAAGTCTGGACGAAATCGATGACAGCTTCTGGGTCAACTTATTTAGTTAGGTTTAGACGGTTAGTCAATATGTACTTAGACAACTTAGGCGTAATTTCCATTAACAATGTAATTAGAGCTGTGCAGTTCGCAACAGACAATGCGCATGTAAGTTATGTAATTGAACATCATGAAATAAAATTCAAATTTTATTAA
Protein Sequence MDSRTGELITARQAENGVYIWEIENPLYFKIDRVEELLYTRTRVYHVQIRFNHNLRRVLGLHKAYLNFQVWTKSMTASGSTYLVRFRRLVNMYLDNLGVISINNVIRAVQFATDNAHVSYVIEHHEIKFKFY

NCBI Accession YP_009506473.1
Location 1080-1469
Gene Name TrAP
Protein Name transcriptional activator protein
Coding Region ATGCTAAATTCATCACCCTCACAGCCCCCTTGTATCAAGAAGGCACACAGGCAAGCCAAGAGGCGGGCCATCAGGAGACGCAGGATTGATTTAGATTGCGGGTGCTCCATATACCTCCACATAGGCTGTACAGGTCATGGATTCACGCACAGGGGAACTCATCACTGCACGTCAGGCAGAGAATGGCGTCTATATCTGGGAGATAGAAAATCCCCTGTATTTCAAGATAGACAGAGTAGAGGAACTACTATACACCAGGACCAGAGTGTACCACGTCCAGATACGATTCAACCACAACCTGAGGAGAGTGTTGGGTCTCCACAAAGCCTACCTGAACTTCCAAGTCTGGACGAAATCGATGACAGCTTCTGGGTCAACTTATTTAGTTAG
Protein Sequence MLNSSPSQPPCIKKAHRQAKRRAIRRRRIDLDCGCSIYLHIGCTGHGFTHRGTHHCTSGREWRLYLGDRKSPVFQDRQSRGTTIHQDQSVPRPDTIQPQPEESVGSPQSLPELPSLDEIDDSFWVNLFS

NCBI Accession YP_009506474.1
Location 1381-2466
Gene Name Rep
Protein Name replication-associated protein
Coding Region ATGCCACGAAAGGGTTCTTTCTATGTTAAAGCCAAAAACTATTTCATCACTTATCCAGACTGCTCTTTAACCAAAGAAGAAGCACTTTCCCAATTACAAAATCTTTCTACACCCGTGAACAAGAAGTTCATCAAAATCTGCAGAGAACTTCATCAAAATGGGAACCCTCATCTCCACGTGCTTGTTCAGTTCGAGGGTAAATACCAGTGCACAAATAACAGATTCTTCGACTTGGTGTCCCCAAACAGGTCAACACATTTCCATCCAAACATTCAGGGAGCTAAATCCAGTTCCGACGTCAAGTCCTACATCGCAAAGGACGGGGACACCATTGAATGGGGAGTGTTCCAGATCGACGGTAGAAGTGCTCGAGGCGGTCAACAATCAGCTAATGACGCAGCTGCTGAAGCGTTGAACTCTGGAACAAAGGAGGAGGCCATGCAAATCATAAAAGAGAAATTACCAGAAAAATTTCTATTCCAATATCATAACTTATCAAGTAATTTGGATAGAATCTTCGCAAAGGTTCATGAGCCATGGACTCCTCCATATCACCTCTCCTCTTTCACAAAGGTACCGGCCGAGATGCAACAATGGGCTGATGACTATTTCGGCAGAGGTGCCGCTGCGCGGCCGGAGAGGCCTGTGAGTATCATAGTAGAAGGTGATTCAAGGACAGGGAAGACGATGTGGGCTCGTGCGTTAGGCCCACATAATTACCTCAGTGGACACCTAGACTTCAATTCCAGAGTCTATTCAAATGAAGTGGAATATAACGTCATCGATGACGTCGCACCGCAATATCTAAAGCTAAAGCACTGGAAAGAACTTCTGGGGGCCCAGAAGGACTGGCAGTCAAATTGCAAATACGGCAAGCCAGTTCAAATTAAAGGAGGGATCCCATCAATCGTGCTTTGCAATCCTGGTGAGGGTGCCAGCTATAAAGAATTCCTGGACAAAGCTGAAAACTCAGCTCTCAAGAATTGGACTATCAAGAATGCTAAATTCATCACCCTCACAGCCCCCTTGTATCAAGAAGGCACACAGGCAAGCCAAGAGGCGGGCCATCAGGAGACGCAGGATTGA
Protein Sequence MPRKGSFYVKAKNYFITYPDCSLTKEEALSQLQNLSTPVNKKFIKICRELHQNGNPHLHVLVQFEGKYQCTNNRFFDLVSPNRSTHFHPNIQGAKSSSDVKSYIAKDGDTIEWGVFQIDGRSARGGQQSANDAAAEALNSGTKEEAMQIIKEKLPEKFLFQYHNLSSNLDRIFAKVHEPWTPPYHLSSFTKVPAEMQQWADDYFGRGAAARPERPVSIIVEGDSRTGKTMWARALGPHNYLSGHLDFNSRVYSNEVEYNVIDDVAPQYLKLKHWKELLGAQKDWQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKEFLDKAENSALKNWTIKNAKFITLTAPLYQEGTQASQEAGHQETQD

NCBI Accession YP_009506475.1
Location 2052-2309
Gene Name AC4
Protein Name aC4
Coding Region ATGGGAACCCTCATCTCCACGTGCTTGTTCAGTTCGAGGGTAAATACCAGTGCACAAATAACAGATTCTTCGACTTGGTGTCCCCAAACAGGTCAACACATTTCCATCCAAACATTCAGGGAGCTAAATCCAGTTCCGACGTCAAGTCCTACATCGCAAAGGACGGGGACACCATTGAATGGGGAGTGTTCCAGATCGACGGTAGAAGTGCTCGAGGCGGTCAACAATCAGCTAATGACGCAGCTGCTGAAGCGTTGA
Protein Sequence MGTLISTCLFSSRVNTSAQITDSSTWCPQTGQHISIQTFRELNPVPTSSPTSQRTGTPLNGECSRSTVEVLEAVNNQLMTQLLKR