Sida common mosaic virus
Basic Information
Genus |
Begomovirus
|
NCBI Assembly |
GCF_002823325.1 |
Isolate |
Brazil |
Release date |
2018/8/25 |
Submitter |
Castillo-Urquiza,G.P., Beserra,J.E. Jr., Bruckner,F.P., Lima,A.T., Varsani,A., Alfenas-Zerbini,P., Murilo Zerbini,F., Beserra,J.E.A. Jr., Lima,A.T.M., Zerbini,P.A., Zerbini,F.M. |
Host |
|
Vector |
|
Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGCGATTTTTTGCCCCCCGACGGGGCGCTATGGTGGCCGCTCGATCTCTCTCTCCCGCGCGCTGTACTCCTTTAATTCTAATTAAAGGGCTAACTTTAGTTGGGACCAATGATAGTGCGCCTGGGAAGCCTAGATATCTGCGCGAGACTGGGGGCGGAAGTTGTTGATCAACGGCTATAAATTAAAGGAAGACGGATCACAGTCTTTTATTCAAAATGCCTAAGCGGGATCCCTCATGGCGTTCGATGGCGGGAACCTCAAAGGTAAGCCGCTCCTCCAATTTCTCTCCTCGTGGAGGCCCAAAGATCAACAAGGCCTCCGAATGGGTAAACAGGCCCATGTACAGGAAGCCCAGGATATACAGGACGCTGAGAACTCCTGATGTTCCTAGAGGCTGTGAAGGGCCCTGTAAGGTCCAGTCTTACGAGCAACGTCACGATATTTCCCATGTGGGGAAAGTGATGTGTATATCTGATGTGACACGAGGTAACGGTATCACTCACCGTGTCGGTAAGCGTTTTTGTGTTAAGTCTGTGTATATTATAGGTAAGGTATGGATGGACGAGAACATCAAGCTCAAAAACCACACGAACAGTTGTATGTTCTGGTTGGTCAGGGACCGTAGACCGTATGGTACACCGATGGACTTTGGCCAAGTTTTCAACATGTTCGACAACGAGCCCAGTACTGCAACAGTAAAGAACGATCTCCGTGATCGTTATCAAGTCATGCACAAGTTCTACGCCAAGGTCACTGGTGGTCAATATGCCAGCAATGAACAGGCTCTGGTCAAGAGGTTCTGGAAGGTCAACAATCATGTGGTGTACAATCACCAGGAGGCAGGGAAATACGAGAACCACACTGAAAACGCTCTGTTACTGTATATGGCATGTACACATGCCTCTAATCCTGTGTATGCGACCCTTAAAATCCGGATCTATTTTTATGATTCGGTTTCAAATTAATAAATTTTGAATTTTATTGAATGCTTCTCCAGTACATGATTTACATAAGGCCTGTTCGTCGCGAAACGAACAGCTCTAATAACATTATTTATTGAGATTACACCTAATTGATCTAAATACAACATGACTAAATGCCTAAATCTATGTAAATATGTCATCCCAGAAGCCTTCACTGATGTCGTCCAGACTTGGAAGTTCAGGAATGCCTTGTGGAGACCCAACGCTCTCCTGAGGTTGTGGTTGAACCGTATCTGGTTGTGATACACTCTGGTCCCTGTGAACAGGATGTCTTCTACATGGTTGATCTTGAAATATAGGGGATTTGTTATCTCCCAGATATACACGCCATTCTCTGCTTGAGGAGCAGTGATGAACTCCCCTGTGCGTGAATCCATGGCTGTGGCAGTTGATGTGGACGTATATGGAGCACCCGCAATTTAGGTCGATCCTTCTACGGCGAGTTGCCCTCTTCTTCGCCGCTCTGTGTTGAACCTTGATAGAGAGGGGTTGTGAGGTTGACCAAAATACCATTATCCATGGCCCAACTCAATAAACCAAATATTACCTCTTTGCCCAAAAAACTCCTTTCTCTCGTAACCTCCCTTGATTCCTAAACATTATTGAGATTTTATAGCTGGAACCCTCACCTGGATTGCAGAGCACGATTGATGGGATACCACCTTTAATTTGAACTGGCTTTCCGTATTTACAATTTGATTGCCAGTCTTTTTGGGCCCCAATCAACTCTTTCCAGTGCTTTAGCTTTAGGTAATGCGGAGGGACGTCATCAATGACGTTATAATCCACTTCGTTCGAGTAAACCCTGGAATTGAAATCCAGGTGTCCACTAAGATAATTATGGGCCCCTAAAGCTCTAGCCCACATCGTCTTCCCCGTCCGACTATCACCTTCGATTATGATACTCACAGGCCTCTCTGGCCGCGCAGCGGAAACGACAAGCCCAAAATAGTCATCAGCCCAAGACTGCATCTCGTCCGGAACGTTAGTGAAAGAAGAGAGGGGAAACGGAGGAGTCCATGGCTCCGGAGCCTTTTTGAAAATTCTATCCAGGTTACTGGATAGGTTATGGTACTGGAAGAGGAACTTTTCCGGCATCTTTTCTTTGATAATCATCATCGCCTCCTCCTTTGTTCCAGCATTCAACGCTTCGGCGGCTACGTCGTTAGCCGTCTGCTGACCTCCTCTAGCACTTCTTCCGTCGATCTGGAACGTCCCCCATTCGACTGTATCACCATCTTTCTCGACGTAGGACTTGACGTCGGAGCTGGATTTAGCACCCTGTATGTTCGGATGGAAATGTGTTGACCTGGATGGGGATACCAAGTCGAACAGTCTGCTATTTGTGCAGTTGAACTTCCCTTCGAACTGAACGAGAACGTGGAGATGTGGCTGCCCATCTTCGTGTAGCTCTCTTGCAACCTTGATGAATTTCTTGTTGACCGGCGTTTGGATAACCCTAATTTGTTCGAGAGCTTCTTCTTTAGGAAGAGAGCACTGAGGATATGTAAGAAAATAATTTTTAGCTTTAATAGAGAAAGACCCCTTTCGTGGCATTTTTGTAAATATAGGTATGTACCCCCAATTGCTCTCGCCTCTAAAACTCTCATGAATTGGGGGAACTGGGGGAACTTATATATGAGAAGTTCCTAAGGTTAGATCTGCCACGTGGCGGCCATCCGCTATAATATT
Gene Information
NCBI Accession
|
YP_009506466.1
|
Location
|
228-977 |
Gene Name
|
CP |
Protein Name
|
coat protein |
Coding Region
|
ATGCCTAAGCGGGATCCCTCATGGCGTTCGATGGCGGGAACCTCAAAGGTAAGCCGCTCCTCCAATTTCTCTCCTCGTGGAGGCCCAAAGATCAACAAGGCCTCCGAATGGGTAAACAGGCCCATGTACAGGAAGCCCAGGATATACAGGACGCTGAGAACTCCTGATGTTCCTAGAGGCTGTGAAGGGCCCTGTAAGGTCCAGTCTTACGAGCAACGTCACGATATTTCCCATGTGGGGAAAGTGATGTGTATATCTGATGTGACACGAGGTAACGGTATCACTCACCGTGTCGGTAAGCGTTTTTGTGTTAAGTCTGTGTATATTATAGGTAAGGTATGGATGGACGAGAACATCAAGCTCAAAAACCACACGAACAGTTGTATGTTCTGGTTGGTCAGGGACCGTAGACCGTATGGTACACCGATGGACTTTGGCCAAGTTTTCAACATGTTCGACAACGAGCCCAGTACTGCAACAGTAAAGAACGATCTCCGTGATCGTTATCAAGTCATGCACAAGTTCTACGCCAAGGTCACTGGTGGTCAATATGCCAGCAATGAACAGGCTCTGGTCAAGAGGTTCTGGAAGGTCAACAATCATGTGGTGTACAATCACCAGGAGGCAGGGAAATACGAGAACCACACTGAAAACGCTCTGTTACTGTATATGGCATGTACACATGCCTCTAATCCTGTGTATGCGACCCTTAAAATCCGGATCTATTTTTATGATTCGGTTTCAAATTAA |
Protein Sequence
|
MPKRDPSWRSMAGTSKVSRSSNFSPRGGPKINKASEWVNRPMYRKPRIYRTLRTPDVPRGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGITHRVGKRFCVKSVYIIGKVWMDENIKLKNHTNSCMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATVKNDLRDRYQVMHKFYAKVTGGQYASNEQALVKRFWKVNNHVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSVSN |
NCBI Accession
|
YP_009506467.1
|
Location
|
974-1372 |
Gene Name
|
Ren |
Protein Name
|
replication enhancer protein |
Coding Region
|
ATGGATTCACGCACAGGGGAGTTCATCACTGCTCCTCAAGCAGAGAATGGCGTGTATATCTGGGAGATAACAAATCCCCTATATTTCAAGATCAACCATGTAGAAGACATCCTGTTCACAGGGACCAGAGTGTATCACAACCAGATACGGTTCAACCACAACCTCAGGAGAGCGTTGGGTCTCCACAAGGCATTCCTGAACTTCCAAGTCTGGACGACATCAGTGAAGGCTTCTGGGATGACATATTTACATAGATTTAGGCATTTAGTCATGTTGTATTTAGATCAATTAGGTGTAATCTCAATAAATAATGTTATTAGAGCTGTTCGTTTCGCGACGAACAGGCCTTATGTAAATCATGTACTGGAGAAGCATTCAATAAAATTCAAAATTTATTAA |
Protein Sequence
|
MDSRTGEFITAPQAENGVYIWEITNPLYFKINHVEDILFTGTRVYHNQIRFNHNLRRALGLHKAFLNFQVWTTSVKASGMTYLHRFRHLVMLYLDQLGVISINNVIRAVRFATNRPYVNHVLEKHSIKFKIY |
NCBI Accession
|
YP_009506468.1
|
Location
|
1119-1508 |
Gene Name
|
Trap |
Protein Name
|
trans-activating protein |
Coding Region
|
ATGGTATTTTGGTCAACCTCACAACCCCTCTCTATCAAGGTTCAACACAGAGCGGCGAAGAAGAGGGCAACTCGCCGTAGAAGGATCGACCTAAATTGCGGGTGCTCCATATACGTCCACATCAACTGCCACAGCCATGGATTCACGCACAGGGGAGTTCATCACTGCTCCTCAAGCAGAGAATGGCGTGTATATCTGGGAGATAACAAATCCCCTATATTTCAAGATCAACCATGTAGAAGACATCCTGTTCACAGGGACCAGAGTGTATCACAACCAGATACGGTTCAACCACAACCTCAGGAGAGCGTTGGGTCTCCACAAGGCATTCCTGAACTTCCAAGTCTGGACGACATCAGTGAAGGCTTCTGGGATGACATATTTACATAG |
Protein Sequence
|
MVFWSTSQPLSIKVQHRAAKKRATRRRRIDLNCGCSIYVHINCHSHGFTHRGVHHCSSSREWRVYLGDNKSPIFQDQPCRRHPVHRDQSVSQPDTVQPQPQESVGSPQGIPELPSLDDISEGFWDDIFT |
NCBI Accession
|
YP_009506469.1
|
Location
|
1539-2552 |
Gene Name
|
Rep |
Protein Name
|
replication-associated protein |
Coding Region
|
ATGCCACGAAAGGGGTCTTTCTCTATTAAAGCTAAAAATTATTTTCTTACATATCCTCAGTGCTCTCTTCCTAAAGAAGAAGCTCTCGAACAAATTAGGGTTATCCAAACGCCGGTCAACAAGAAATTCATCAAGGTTGCAAGAGAGCTACACGAAGATGGGCAGCCACATCTCCACGTTCTCGTTCAGTTCGAAGGGAAGTTCAACTGCACAAATAGCAGACTGTTCGACTTGGTATCCCCATCCAGGTCAACACATTTCCATCCGAACATACAGGGTGCTAAATCCAGCTCCGACGTCAAGTCCTACGTCGAGAAAGATGGTGATACAGTCGAATGGGGGACGTTCCAGATCGACGGAAGAAGTGCTAGAGGAGGTCAGCAGACGGCTAACGACGTAGCCGCCGAAGCGTTGAATGCTGGAACAAAGGAGGAGGCGATGATGATTATCAAAGAAAAGATGCCGGAAAAGTTCCTCTTCCAGTACCATAACCTATCCAGTAACCTGGATAGAATTTTCAAAAAGGCTCCGGAGCCATGGACTCCTCCGTTTCCCCTCTCTTCTTTCACTAACGTTCCGGACGAGATGCAGTCTTGGGCTGATGACTATTTTGGGCTTGTCGTTTCCGCTGCGCGGCCAGAGAGGCCTGTGAGTATCATAATCGAAGGTGATAGTCGGACGGGGAAGACGATGTGGGCTAGAGCTTTAGGGGCCCATAATTATCTTAGTGGACACCTGGATTTCAATTCCAGGGTTTACTCGAACGAAGTGGATTATAACGTCATTGATGACGTCCCTCCGCATTACCTAAAGCTAAAGCACTGGAAAGAGTTGATTGGGGCCCAAAAAGACTGGCAATCAAATTGTAAATACGGAAAGCCAGTTCAAATTAAAGGTGGTATCCCATCAATCGTGCTCTGCAATCCAGGTGAGGGTTCCAGCTATAAAATCTCAATAATGTTTAGGAATCAAGGGAGGTTACGAGAGAAAGGAGTTTTTTGGGCAAAGAGGTAA |
Protein Sequence
|
MPRKGSFSIKAKNYFLTYPQCSLPKEEALEQIRVIQTPVNKKFIKVARELHEDGQPHLHVLVQFEGKFNCTNSRLFDLVSPSRSTHFHPNIQGAKSSSDVKSYVEKDGDTVEWGTFQIDGRSARGGQQTANDVAAEALNAGTKEEAMMIIKEKMPEKFLFQYHNLSSNLDRIFKKAPEPWTPPFPLSSFTNVPDEMQSWADDYFGLVVSAARPERPVSIIIEGDSRTGKTMWARALGAHNYLSGHLDFNSRVYSNEVDYNVIDDVPPHYLKLKHWKELIGAQKDWQSNCKYGKPVQIKGGIPSIVLCNPGEGSSYKISIMFRNQGRLREKGVFWAKR |
NCBI Accession
|
YP_009506470.1
|
Location
|
2153-2395 |
Gene Name
|
AC4 |
Protein Name
|
AC4 |
Coding Region
|
ATGGGCAGCCACATCTCCACGTTCTCGTTCAGTTCGAAGGGAAGTTCAACTGCACAAATAGCAGACTGTTCGACTTGGTATCCCCATCCAGGTCAACACATTTCCATCCGAACATACAGGGTGCTAAATCCAGCTCCGACGTCAAGTCCTACGTCGAGAAAGATGGTGATACAGTCGAATGGGGGACGTTCCAGATCGACGGAAGAAGTGCTAGAGGAGGTCAGCAGACGGCTAACGACGTAG |
Protein Sequence
|
MGSHISTFSFSSKGSSTAQIADCSTWYPHPGQHISIRTYRVLNPAPTSSPTSRKMVIQSNGGRSRSTEEVLEEVSRRLTT |