Sida common mosaic virus


Basic Information

Genus Begomovirus
NCBI Assembly GCF_002823325.1
Isolate Brazil
Release date 2018/8/25
Submitter Castillo-Urquiza,G.P., Beserra,J.E. Jr., Bruckner,F.P., Lima,A.T., Varsani,A., Alfenas-Zerbini,P., Murilo Zerbini,F., Beserra,J.E.A. Jr., Lima,A.T.M., Zerbini,P.A., Zerbini,F.M.
Host
Vector
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_038457
ACCGGATGGCCGCGCGATTTTTTGCCCCCCGACGGGGCGCTATGGTGGCCGCTCGATCTCTCTCTCCCGCGCGCTGTACTCCTTTAATTCTAATTAAAGGGCTAACTTTAGTTGGGACCAATGATAGTGCGCCTGGGAAGCCTAGATATCTGCGCGAGACTGGGGGCGGAAGTTGTTGATCAACGGCTATAAATTAAAGGAAGACGGATCACAGTCTTTTATTCAAAATGCCTAAGCGGGATCCCTCATGGCGTTCGATGGCGGGAACCTCAAAGGTAAGCCGCTCCTCCAATTTCTCTCCTCGTGGAGGCCCAAAGATCAACAAGGCCTCCGAATGGGTAAACAGGCCCATGTACAGGAAGCCCAGGATATACAGGACGCTGAGAACTCCTGATGTTCCTAGAGGCTGTGAAGGGCCCTGTAAGGTCCAGTCTTACGAGCAACGTCACGATATTTCCCATGTGGGGAAAGTGATGTGTATATCTGATGTGACACGAGGTAACGGTATCACTCACCGTGTCGGTAAGCGTTTTTGTGTTAAGTCTGTGTATATTATAGGTAAGGTATGGATGGACGAGAACATCAAGCTCAAAAACCACACGAACAGTTGTATGTTCTGGTTGGTCAGGGACCGTAGACCGTATGGTACACCGATGGACTTTGGCCAAGTTTTCAACATGTTCGACAACGAGCCCAGTACTGCAACAGTAAAGAACGATCTCCGTGATCGTTATCAAGTCATGCACAAGTTCTACGCCAAGGTCACTGGTGGTCAATATGCCAGCAATGAACAGGCTCTGGTCAAGAGGTTCTGGAAGGTCAACAATCATGTGGTGTACAATCACCAGGAGGCAGGGAAATACGAGAACCACACTGAAAACGCTCTGTTACTGTATATGGCATGTACACATGCCTCTAATCCTGTGTATGCGACCCTTAAAATCCGGATCTATTTTTATGATTCGGTTTCAAATTAATAAATTTTGAATTTTATTGAATGCTTCTCCAGTACATGATTTACATAAGGCCTGTTCGTCGCGAAACGAACAGCTCTAATAACATTATTTATTGAGATTACACCTAATTGATCTAAATACAACATGACTAAATGCCTAAATCTATGTAAATATGTCATCCCAGAAGCCTTCACTGATGTCGTCCAGACTTGGAAGTTCAGGAATGCCTTGTGGAGACCCAACGCTCTCCTGAGGTTGTGGTTGAACCGTATCTGGTTGTGATACACTCTGGTCCCTGTGAACAGGATGTCTTCTACATGGTTGATCTTGAAATATAGGGGATTTGTTATCTCCCAGATATACACGCCATTCTCTGCTTGAGGAGCAGTGATGAACTCCCCTGTGCGTGAATCCATGGCTGTGGCAGTTGATGTGGACGTATATGGAGCACCCGCAATTTAGGTCGATCCTTCTACGGCGAGTTGCCCTCTTCTTCGCCGCTCTGTGTTGAACCTTGATAGAGAGGGGTTGTGAGGTTGACCAAAATACCATTATCCATGGCCCAACTCAATAAACCAAATATTACCTCTTTGCCCAAAAAACTCCTTTCTCTCGTAACCTCCCTTGATTCCTAAACATTATTGAGATTTTATAGCTGGAACCCTCACCTGGATTGCAGAGCACGATTGATGGGATACCACCTTTAATTTGAACTGGCTTTCCGTATTTACAATTTGATTGCCAGTCTTTTTGGGCCCCAATCAACTCTTTCCAGTGCTTTAGCTTTAGGTAATGCGGAGGGACGTCATCAATGACGTTATAATCCACTTCGTTCGAGTAAACCCTGGAATTGAAATCCAGGTGTCCACTAAGATAATTATGGGCCCCTAAAGCTCTAGCCCACATCGTCTTCCCCGTCCGACTATCACCTTCGATTATGATACTCACAGGCCTCTCTGGCCGCGCAGCGGAAACGACAAGCCCAAAATAGTCATCAGCCCAAGACTGCATCTCGTCCGGAACGTTAGTGAAAGAAGAGAGGGGAAACGGAGGAGTCCATGGCTCCGGAGCCTTTTTGAAAATTCTATCCAGGTTACTGGATAGGTTATGGTACTGGAAGAGGAACTTTTCCGGCATCTTTTCTTTGATAATCATCATCGCCTCCTCCTTTGTTCCAGCATTCAACGCTTCGGCGGCTACGTCGTTAGCCGTCTGCTGACCTCCTCTAGCACTTCTTCCGTCGATCTGGAACGTCCCCCATTCGACTGTATCACCATCTTTCTCGACGTAGGACTTGACGTCGGAGCTGGATTTAGCACCCTGTATGTTCGGATGGAAATGTGTTGACCTGGATGGGGATACCAAGTCGAACAGTCTGCTATTTGTGCAGTTGAACTTCCCTTCGAACTGAACGAGAACGTGGAGATGTGGCTGCCCATCTTCGTGTAGCTCTCTTGCAACCTTGATGAATTTCTTGTTGACCGGCGTTTGGATAACCCTAATTTGTTCGAGAGCTTCTTCTTTAGGAAGAGAGCACTGAGGATATGTAAGAAAATAATTTTTAGCTTTAATAGAGAAAGACCCCTTTCGTGGCATTTTTGTAAATATAGGTATGTACCCCCAATTGCTCTCGCCTCTAAAACTCTCATGAATTGGGGGAACTGGGGGAACTTATATATGAGAAGTTCCTAAGGTTAGATCTGCCACGTGGCGGCCATCCGCTATAATATT

Gene Information

NCBI Accession YP_009506466.1
Location 228-977
Gene Name CP
Protein Name coat protein
Coding Region ATGCCTAAGCGGGATCCCTCATGGCGTTCGATGGCGGGAACCTCAAAGGTAAGCCGCTCCTCCAATTTCTCTCCTCGTGGAGGCCCAAAGATCAACAAGGCCTCCGAATGGGTAAACAGGCCCATGTACAGGAAGCCCAGGATATACAGGACGCTGAGAACTCCTGATGTTCCTAGAGGCTGTGAAGGGCCCTGTAAGGTCCAGTCTTACGAGCAACGTCACGATATTTCCCATGTGGGGAAAGTGATGTGTATATCTGATGTGACACGAGGTAACGGTATCACTCACCGTGTCGGTAAGCGTTTTTGTGTTAAGTCTGTGTATATTATAGGTAAGGTATGGATGGACGAGAACATCAAGCTCAAAAACCACACGAACAGTTGTATGTTCTGGTTGGTCAGGGACCGTAGACCGTATGGTACACCGATGGACTTTGGCCAAGTTTTCAACATGTTCGACAACGAGCCCAGTACTGCAACAGTAAAGAACGATCTCCGTGATCGTTATCAAGTCATGCACAAGTTCTACGCCAAGGTCACTGGTGGTCAATATGCCAGCAATGAACAGGCTCTGGTCAAGAGGTTCTGGAAGGTCAACAATCATGTGGTGTACAATCACCAGGAGGCAGGGAAATACGAGAACCACACTGAAAACGCTCTGTTACTGTATATGGCATGTACACATGCCTCTAATCCTGTGTATGCGACCCTTAAAATCCGGATCTATTTTTATGATTCGGTTTCAAATTAA
Protein Sequence MPKRDPSWRSMAGTSKVSRSSNFSPRGGPKINKASEWVNRPMYRKPRIYRTLRTPDVPRGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGITHRVGKRFCVKSVYIIGKVWMDENIKLKNHTNSCMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATVKNDLRDRYQVMHKFYAKVTGGQYASNEQALVKRFWKVNNHVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSVSN

NCBI Accession YP_009506467.1
Location 974-1372
Gene Name Ren
Protein Name replication enhancer protein
Coding Region ATGGATTCACGCACAGGGGAGTTCATCACTGCTCCTCAAGCAGAGAATGGCGTGTATATCTGGGAGATAACAAATCCCCTATATTTCAAGATCAACCATGTAGAAGACATCCTGTTCACAGGGACCAGAGTGTATCACAACCAGATACGGTTCAACCACAACCTCAGGAGAGCGTTGGGTCTCCACAAGGCATTCCTGAACTTCCAAGTCTGGACGACATCAGTGAAGGCTTCTGGGATGACATATTTACATAGATTTAGGCATTTAGTCATGTTGTATTTAGATCAATTAGGTGTAATCTCAATAAATAATGTTATTAGAGCTGTTCGTTTCGCGACGAACAGGCCTTATGTAAATCATGTACTGGAGAAGCATTCAATAAAATTCAAAATTTATTAA
Protein Sequence MDSRTGEFITAPQAENGVYIWEITNPLYFKINHVEDILFTGTRVYHNQIRFNHNLRRALGLHKAFLNFQVWTTSVKASGMTYLHRFRHLVMLYLDQLGVISINNVIRAVRFATNRPYVNHVLEKHSIKFKIY

NCBI Accession YP_009506468.1
Location 1119-1508
Gene Name Trap
Protein Name trans-activating protein
Coding Region ATGGTATTTTGGTCAACCTCACAACCCCTCTCTATCAAGGTTCAACACAGAGCGGCGAAGAAGAGGGCAACTCGCCGTAGAAGGATCGACCTAAATTGCGGGTGCTCCATATACGTCCACATCAACTGCCACAGCCATGGATTCACGCACAGGGGAGTTCATCACTGCTCCTCAAGCAGAGAATGGCGTGTATATCTGGGAGATAACAAATCCCCTATATTTCAAGATCAACCATGTAGAAGACATCCTGTTCACAGGGACCAGAGTGTATCACAACCAGATACGGTTCAACCACAACCTCAGGAGAGCGTTGGGTCTCCACAAGGCATTCCTGAACTTCCAAGTCTGGACGACATCAGTGAAGGCTTCTGGGATGACATATTTACATAG
Protein Sequence MVFWSTSQPLSIKVQHRAAKKRATRRRRIDLNCGCSIYVHINCHSHGFTHRGVHHCSSSREWRVYLGDNKSPIFQDQPCRRHPVHRDQSVSQPDTVQPQPQESVGSPQGIPELPSLDDISEGFWDDIFT

NCBI Accession YP_009506469.1
Location 1539-2552
Gene Name Rep
Protein Name replication-associated protein
Coding Region ATGCCACGAAAGGGGTCTTTCTCTATTAAAGCTAAAAATTATTTTCTTACATATCCTCAGTGCTCTCTTCCTAAAGAAGAAGCTCTCGAACAAATTAGGGTTATCCAAACGCCGGTCAACAAGAAATTCATCAAGGTTGCAAGAGAGCTACACGAAGATGGGCAGCCACATCTCCACGTTCTCGTTCAGTTCGAAGGGAAGTTCAACTGCACAAATAGCAGACTGTTCGACTTGGTATCCCCATCCAGGTCAACACATTTCCATCCGAACATACAGGGTGCTAAATCCAGCTCCGACGTCAAGTCCTACGTCGAGAAAGATGGTGATACAGTCGAATGGGGGACGTTCCAGATCGACGGAAGAAGTGCTAGAGGAGGTCAGCAGACGGCTAACGACGTAGCCGCCGAAGCGTTGAATGCTGGAACAAAGGAGGAGGCGATGATGATTATCAAAGAAAAGATGCCGGAAAAGTTCCTCTTCCAGTACCATAACCTATCCAGTAACCTGGATAGAATTTTCAAAAAGGCTCCGGAGCCATGGACTCCTCCGTTTCCCCTCTCTTCTTTCACTAACGTTCCGGACGAGATGCAGTCTTGGGCTGATGACTATTTTGGGCTTGTCGTTTCCGCTGCGCGGCCAGAGAGGCCTGTGAGTATCATAATCGAAGGTGATAGTCGGACGGGGAAGACGATGTGGGCTAGAGCTTTAGGGGCCCATAATTATCTTAGTGGACACCTGGATTTCAATTCCAGGGTTTACTCGAACGAAGTGGATTATAACGTCATTGATGACGTCCCTCCGCATTACCTAAAGCTAAAGCACTGGAAAGAGTTGATTGGGGCCCAAAAAGACTGGCAATCAAATTGTAAATACGGAAAGCCAGTTCAAATTAAAGGTGGTATCCCATCAATCGTGCTCTGCAATCCAGGTGAGGGTTCCAGCTATAAAATCTCAATAATGTTTAGGAATCAAGGGAGGTTACGAGAGAAAGGAGTTTTTTGGGCAAAGAGGTAA
Protein Sequence MPRKGSFSIKAKNYFLTYPQCSLPKEEALEQIRVIQTPVNKKFIKVARELHEDGQPHLHVLVQFEGKFNCTNSRLFDLVSPSRSTHFHPNIQGAKSSSDVKSYVEKDGDTVEWGTFQIDGRSARGGQQTANDVAAEALNAGTKEEAMMIIKEKMPEKFLFQYHNLSSNLDRIFKKAPEPWTPPFPLSSFTNVPDEMQSWADDYFGLVVSAARPERPVSIIIEGDSRTGKTMWARALGAHNYLSGHLDFNSRVYSNEVDYNVIDDVPPHYLKLKHWKELIGAQKDWQSNCKYGKPVQIKGGIPSIVLCNPGEGSSYKISIMFRNQGRLREKGVFWAKR

NCBI Accession YP_009506470.1
Location 2153-2395
Gene Name AC4
Protein Name AC4
Coding Region ATGGGCAGCCACATCTCCACGTTCTCGTTCAGTTCGAAGGGAAGTTCAACTGCACAAATAGCAGACTGTTCGACTTGGTATCCCCATCCAGGTCAACACATTTCCATCCGAACATACAGGGTGCTAAATCCAGCTCCGACGTCAAGTCCTACGTCGAGAAAGATGGTGATACAGTCGAATGGGGGACGTTCCAGATCGACGGAAGAAGTGCTAGAGGAGGTCAGCAGACGGCTAACGACGTAG
Protein Sequence MGSHISTFSFSSKGSSTAQIADCSTWYPHPGQHISIRTYRVLNPAPTSSPTSRKMVIQSNGGRSRSTEEVLEEVSRRLTT