Sida chlorotic mottle virus


Basic Information

Genus Begomovirus
NCBI Assembly GCF_003029395.1
Isolate Brazil
Release date 2018/8/26
Submitter Ferro,C.G., Silva,J.P., Xavier,C.A.D., Godinho,M.T., Lima,A.T.M., Mar,T.B., Lau,D., Zerbini,F.M.
Vector
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_038990
ACCGGATGGCCGCGATTTTTTCGCCCTCTAATCCGGCCCAGGCCCAAACGCAATCTCCGTACGGGGACCAGCCAGATAAAGACAAATAAAGACGTCCAATAGGAGCGCGTGTTGGAAGACTAGATATTTATTAACGACTTCGTCACTAAGTTGTTACTCTATATAAGAAAGTGACGTTTGTATATGCTTTAAATCAAAATGCCCAAGCGGGACGCTCCATGGCGCATAATGGCGGGGACCTCAAAGGTTTCCCGCTCTGTCAATTATTCACCCCGTGGTGGTCCTAAATTGGACAAGGCATCCGCTTGGGTCAACAGGCCCATGTACAGGAAGCCCAGGATTTACCGCACTTTGAGAAGCCCAGACGTCCCTAAGGGATGTGAAGGCCCGTGCAAGGTCCAGTCATATGAGTCTCGTCATGACGTTTCCCATGTTGGCAAGGTGATCTGTGTGTCAGATGTTACACGTGGCAACGGTATTACTCACCGCGTGGGTAAGCGATTCTGCGTCAAGTCTGTGTATATATTAGGGAAGATCTGGATGGATGAGACCATCAAGTTGAAGAACCACACGAACAGCGTCATGTTCTGGTTGGTTAGGGACCGGAGACCTTATGGAACGCCTATGGATTTTGGCCAAGTGTTCAACATGTTCGACAACGAGCCCAGTACTGCCACCGTTAAGAACGATCTTCGAGATCGTTTTCAGGTTTTGCACAAGTTCTACGCCAAGGTTACGGGTGGACAGTATGCCAGCAACGAGCAGGCTATCGTGAAGCGCTTCTGGAAGGTCAACAATTACGTGGTCTACAACCATCAGGAAGCAGGGAAATATGAGAATCATACTGAAAACGGTCTGTTATTGTATATGGCATGTACTCATGCCTCTAATCCCGTGTATGCTACATTGAAAATTCGGATCTATTTTTATGATTCGATAACAAATTAATAAAATTTGAATTTTATTTCATGATTCTCGAGTACATAATTTACATAATATTTGTCTGTTGCGAATCGAACAGCTCTTATTACATGGTTAAGTCCTATAACACCTATATTATCTAAATACATATTAACTAAATGCTTAAATCTATGTAAATATGTCGTCCCAGAAGCTCGAATCGAGGTCGTCCAGACTTGGAAGTTCAGGTAGGCTTTGTGTAGACCCAGCGCCTTCCTGACGTTGTGGTTGAACCGTATCTGGATGTGGTATATCCTTGTCATTGTGTATATCGGATCCTCCACATGGTCGATCCTGAAATAAAGGGGATTTGGAACCTCCCAGATAAAAACGGAATTCTCTGCCTGAGACACAGTGATGTTCTCCCCTGTGCGTGAATCCATGATTTGCGCAGTTGATGTGGAGGAAGATGGAACAGCCGCAATTGAGGTCAATGCGCTTACGACGAATTGCCCTCTTCTTCGCGATTTTGTGTTGTGGTTTGATAGAGGGGGGCGTCGAGGAAGATGAATTTCGCATTGTGTATTGTCCACGCTCTCAGTGAAGCATTTTCCTCTTTGTTGAGGAAGTCTTTATAGCTAGCCCCCTCGCCTGGATTGCATAGCACGATTGATGGAATGCCTCCTTTAATTTGAACTGGCTTTCCATATTTACAGTTGGACTGCCAGTCTTTTTGGGCCCCAATCAGCTCTTTCCAGTGCTTCATCTTTAGATATTGCGGGGCAACGTCATCAATGACGTTGTATTCCGCTTCATTTGAGTAAACCCTAGAATTGAAGTCTAGGTGTCCACTTAAATAATTATGTGGGCCTAATGCACGAGCCCACATCGTCTTTCCCGTTCTCGAATCACCCTCGACAATCAAACTAATAGGTCTGTCTGGCCGCGCAGCGGCACCCCTACCGAAATAATCATCAGCCCACTCTTGCATCTCATCCGGAACGGCAGTGAAGGTTGAGAGAAGAAACGGAGGAACCCACGGTTCTGGAGCCTTAGAGAAAATTCTGTCCAGGTTACTGGACAGATTGTGATATTGAAAGAGAAATTTCTCCGGCAGCTTCTCTCTTATTATTTGTAACGCCGCTTCTTTTGAAGGGGCGTTTAAGGCCTCTGCGGCAGCGTCGTTAGCTGTCTGGCAACCTCCTCTAGCACTTCTTCCGTCGATTTGGAATTCTCCCCATTCGAGGGTGTCACCGTCCTTGTCGATGTAGGACTTGACGTCGGACGATGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGATACCAGGTCGAAGAGTCTCTGATTTGTGCACACGAATTTGCCTTCGAATTGGAGAAGCACGTGGAGGTGAGGTTGCCCATTTTCATGAAGCTCTCTGCATATTTTGATGAACTTCTTATTTGTTGGGGTGTTTAGGGCTTTTATTTGGGAAAGGGTTTCTTCCTTGGTTAATGTGCATAGGGGGTATGTGAGGAAATAATTTTTGGAAGAAATACGGAATCGTTTTGGAACGGATGGCATTTTTGTAATAATAGGGAAGTCACCAATTGATGTTTGCTCTCAAAGTGCTTATGAATTGGTGACATTGGTGACAATATATAGAAGTTCCATAAGGGGCAAAAGCGGCCATCCGTTCTAATATT

Gene Information

NCBI Accession YP_009508418.1
Location 199-948
Protein Name CP
Coding Region ATGCCCAAGCGGGACGCTCCATGGCGCATAATGGCGGGGACCTCAAAGGTTTCCCGCTCTGTCAATTATTCACCCCGTGGTGGTCCTAAATTGGACAAGGCATCCGCTTGGGTCAACAGGCCCATGTACAGGAAGCCCAGGATTTACCGCACTTTGAGAAGCCCAGACGTCCCTAAGGGATGTGAAGGCCCGTGCAAGGTCCAGTCATATGAGTCTCGTCATGACGTTTCCCATGTTGGCAAGGTGATCTGTGTGTCAGATGTTACACGTGGCAACGGTATTACTCACCGCGTGGGTAAGCGATTCTGCGTCAAGTCTGTGTATATATTAGGGAAGATCTGGATGGATGAGACCATCAAGTTGAAGAACCACACGAACAGCGTCATGTTCTGGTTGGTTAGGGACCGGAGACCTTATGGAACGCCTATGGATTTTGGCCAAGTGTTCAACATGTTCGACAACGAGCCCAGTACTGCCACCGTTAAGAACGATCTTCGAGATCGTTTTCAGGTTTTGCACAAGTTCTACGCCAAGGTTACGGGTGGACAGTATGCCAGCAACGAGCAGGCTATCGTGAAGCGCTTCTGGAAGGTCAACAATTACGTGGTCTACAACCATCAGGAAGCAGGGAAATATGAGAATCATACTGAAAACGGTCTGTTATTGTATATGGCATGTACTCATGCCTCTAATCCCGTGTATGCTACATTGAAAATTCGGATCTATTTTTATGATTCGATAACAAATTAA
Protein Sequence MPKRDAPWRIMAGTSKVSRSVNYSPRGGPKLDKASAWVNRPMYRKPRIYRTLRSPDVPKGCEGPCKVQSYESRHDVSHVGKVICVSDVTRGNGITHRVGKRFCVKSVYILGKIWMDETIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATVKNDLRDRFQVLHKFYAKVTGGQYASNEQAIVKRFWKVNNYVVYNHQEAGKYENHTENGLLLYMACTHASNPVYATLKIRIYFYDSITN

NCBI Accession YP_009508419.1
Location 945-1343
Protein Name REN
Coding Region ATGGATTCACGCACAGGGGAGAACATCACTGTGTCTCAGGCAGAGAATTCCGTTTTTATCTGGGAGGTTCCAAATCCCCTTTATTTCAGGATCGACCATGTGGAGGATCCGATATACACAATGACAAGGATATACCACATCCAGATACGGTTCAACCACAACGTCAGGAAGGCGCTGGGTCTACACAAAGCCTACCTGAACTTCCAAGTCTGGACGACCTCGATTCGAGCTTCTGGGACGACATATTTACATAGATTTAAGCATTTAGTTAATATGTATTTAGATAATATAGGTGTTATAGGACTTAACCATGTAATAAGAGCTGTTCGATTCGCAACAGACAAATATTATGTAAATTATGTACTCGAGAATCATGAAATAAAATTCAAATTTTATTAA
Protein Sequence MDSRTGENITVSQAENSVFIWEVPNPLYFRIDHVEDPIYTMTRIYHIQIRFNHNVRKALGLHKAYLNFQVWTTSIRASGTTYLHRFKHLVNMYLDNIGVIGLNHVIRAVRFATDKYYVNYVLENHEIKFKFY

NCBI Accession YP_009508420.1
Location 1090-1479
Protein Name TRAP
Coding Region ATGCGAAATTCATCTTCCTCGACGCCCCCCTCTATCAAACCACAACACAAAATCGCGAAGAAGAGGGCAATTCGTCGTAAGCGCATTGACCTCAATTGCGGCTGTTCCATCTTCCTCCACATCAACTGCGCAAATCATGGATTCACGCACAGGGGAGAACATCACTGTGTCTCAGGCAGAGAATTCCGTTTTTATCTGGGAGGTTCCAAATCCCCTTTATTTCAGGATCGACCATGTGGAGGATCCGATATACACAATGACAAGGATATACCACATCCAGATACGGTTCAACCACAACGTCAGGAAGGCGCTGGGTCTACACAAAGCCTACCTGAACTTCCAAGTCTGGACGACCTCGATTCGAGCTTCTGGGACGACATATTTACATAG
Protein Sequence MRNSSSSTPPSIKPQHKIAKKRAIRRKRIDLNCGCSIFLHINCANHGFTHRGEHHCVSGREFRFYLGGSKSPLFQDRPCGGSDIHNDKDIPHPDTVQPQRQEGAGSTQSLPELPSLDDLDSSFWDDIFT

NCBI Accession YP_009508421.1
Location 1400-2479
Protein Name Rep
Coding Region ATGCCATCCGTTCCAAAACGATTCCGTATTTCTTCCAAAAATTATTTCCTCACATACCCCCTATGCACATTAACCAAGGAAGAAACCCTTTCCCAAATAAAAGCCCTAAACACCCCAACAAATAAGAAGTTCATCAAAATATGCAGAGAGCTTCATGAAAATGGGCAACCTCACCTCCACGTGCTTCTCCAATTCGAAGGCAAATTCGTGTGCACAAATCAGAGACTCTTCGACCTGGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCATCGTCCGACGTCAAGTCCTACATCGACAAGGACGGTGACACCCTCGAATGGGGAGAATTCCAAATCGACGGAAGAAGTGCTAGAGGAGGTTGCCAGACAGCTAACGACGCTGCCGCAGAGGCCTTAAACGCCCCTTCAAAAGAAGCGGCGTTACAAATAATAAGAGAGAAGCTGCCGGAGAAATTTCTCTTTCAATATCACAATCTGTCCAGTAACCTGGACAGAATTTTCTCTAAGGCTCCAGAACCGTGGGTTCCTCCGTTTCTTCTCTCAACCTTCACTGCCGTTCCGGATGAGATGCAAGAGTGGGCTGATGATTATTTCGGTAGGGGTGCCGCTGCGCGGCCAGACAGACCTATTAGTTTGATTGTCGAGGGTGATTCGAGAACGGGAAAGACGATGTGGGCTCGTGCATTAGGCCCACATAATTATTTAAGTGGACACCTAGACTTCAATTCTAGGGTTTACTCAAATGAAGCGGAATACAACGTCATTGATGACGTTGCCCCGCAATATCTAAAGATGAAGCACTGGAAAGAGCTGATTGGGGCCCAAAAAGACTGGCAGTCCAACTGTAAATATGGAAAGCCAGTTCAAATTAAAGGAGGCATTCCATCAATCGTGCTATGCAATCCAGGCGAGGGGGCTAGCTATAAAGACTTCCTCAACAAAGAGGAAAATGCTTCACTGAGAGCGTGGACAATACACAATGCGAAATTCATCTTCCTCGACGCCCCCCTCTATCAAACCACAACACAAAATCGCGAAGAAGAGGGCAATTCGTCGTAA
Protein Sequence MPSVPKRFRISSKNYFLTYPLCTLTKEETLSQIKALNTPTNKKFIKICRELHENGQPHLHVLLQFEGKFVCTNQRLFDLVSPTRSAHFHPNIQGAKSSSDVKSYIDKDGDTLEWGEFQIDGRSARGGCQTANDAAAEALNAPSKEAALQIIREKLPEKFLFQYHNLSSNLDRIFSKAPEPWVPPFLLSTFTAVPDEMQEWADDYFGRGAAARPDRPISLIVEGDSRTGKTMWARALGPHNYLSGHLDFNSRVYSNEAEYNVIDDVAPQYLKMKHWKELIGAQKDWQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKDFLNKEENASLRAWTIHNAKFIFLDAPLYQTTTQNREEEGNSS

NCBI Accession YP_009508422.1
Location 2062-2325
Protein Name AC4 protein
Coding Region ATGAAAATGGGCAACCTCACCTCCACGTGCTTCTCCAATTCGAAGGCAAATTCGTGTGCACAAATCAGAGACTCTTCGACCTGGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCATCGTCCGACGTCAAGTCCTACATCGACAAGGACGGTGACACCCTCGAATGGGGAGAATTCCAAATCGACGGAAGAAGTGCTAGAGGAGGTTGCCAGACAGCTAACGACGCTGCCGCAGAGGCCTTAA
Protein Sequence MKMGNLTSTCFSNSKANSCAQIRDSSTWYPQPGQHISIRTFRELNHRPTSSPTSTRTVTPSNGENSKSTEEVLEEVARQLTTLPQRP