Sida chlorotic mottle virus
Basic Information
Genus |
Begomovirus
|
NCBI Assembly |
GCF_003029395.1 |
Isolate |
Brazil |
Release date |
2018/8/26 |
Submitter |
Ferro,C.G., Silva,J.P., Xavier,C.A.D., Godinho,M.T., Lima,A.T.M., Mar,T.B., Lau,D., Zerbini,F.M. |
Vector |
|
Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGATTTTTTCGCCCTCTAATCCGGCCCAGGCCCAAACGCAATCTCCGTACGGGGACCAGCCAGATAAAGACAAATAAAGACGTCCAATAGGAGCGCGTGTTGGAAGACTAGATATTTATTAACGACTTCGTCACTAAGTTGTTACTCTATATAAGAAAGTGACGTTTGTATATGCTTTAAATCAAAATGCCCAAGCGGGACGCTCCATGGCGCATAATGGCGGGGACCTCAAAGGTTTCCCGCTCTGTCAATTATTCACCCCGTGGTGGTCCTAAATTGGACAAGGCATCCGCTTGGGTCAACAGGCCCATGTACAGGAAGCCCAGGATTTACCGCACTTTGAGAAGCCCAGACGTCCCTAAGGGATGTGAAGGCCCGTGCAAGGTCCAGTCATATGAGTCTCGTCATGACGTTTCCCATGTTGGCAAGGTGATCTGTGTGTCAGATGTTACACGTGGCAACGGTATTACTCACCGCGTGGGTAAGCGATTCTGCGTCAAGTCTGTGTATATATTAGGGAAGATCTGGATGGATGAGACCATCAAGTTGAAGAACCACACGAACAGCGTCATGTTCTGGTTGGTTAGGGACCGGAGACCTTATGGAACGCCTATGGATTTTGGCCAAGTGTTCAACATGTTCGACAACGAGCCCAGTACTGCCACCGTTAAGAACGATCTTCGAGATCGTTTTCAGGTTTTGCACAAGTTCTACGCCAAGGTTACGGGTGGACAGTATGCCAGCAACGAGCAGGCTATCGTGAAGCGCTTCTGGAAGGTCAACAATTACGTGGTCTACAACCATCAGGAAGCAGGGAAATATGAGAATCATACTGAAAACGGTCTGTTATTGTATATGGCATGTACTCATGCCTCTAATCCCGTGTATGCTACATTGAAAATTCGGATCTATTTTTATGATTCGATAACAAATTAATAAAATTTGAATTTTATTTCATGATTCTCGAGTACATAATTTACATAATATTTGTCTGTTGCGAATCGAACAGCTCTTATTACATGGTTAAGTCCTATAACACCTATATTATCTAAATACATATTAACTAAATGCTTAAATCTATGTAAATATGTCGTCCCAGAAGCTCGAATCGAGGTCGTCCAGACTTGGAAGTTCAGGTAGGCTTTGTGTAGACCCAGCGCCTTCCTGACGTTGTGGTTGAACCGTATCTGGATGTGGTATATCCTTGTCATTGTGTATATCGGATCCTCCACATGGTCGATCCTGAAATAAAGGGGATTTGGAACCTCCCAGATAAAAACGGAATTCTCTGCCTGAGACACAGTGATGTTCTCCCCTGTGCGTGAATCCATGATTTGCGCAGTTGATGTGGAGGAAGATGGAACAGCCGCAATTGAGGTCAATGCGCTTACGACGAATTGCCCTCTTCTTCGCGATTTTGTGTTGTGGTTTGATAGAGGGGGGCGTCGAGGAAGATGAATTTCGCATTGTGTATTGTCCACGCTCTCAGTGAAGCATTTTCCTCTTTGTTGAGGAAGTCTTTATAGCTAGCCCCCTCGCCTGGATTGCATAGCACGATTGATGGAATGCCTCCTTTAATTTGAACTGGCTTTCCATATTTACAGTTGGACTGCCAGTCTTTTTGGGCCCCAATCAGCTCTTTCCAGTGCTTCATCTTTAGATATTGCGGGGCAACGTCATCAATGACGTTGTATTCCGCTTCATTTGAGTAAACCCTAGAATTGAAGTCTAGGTGTCCACTTAAATAATTATGTGGGCCTAATGCACGAGCCCACATCGTCTTTCCCGTTCTCGAATCACCCTCGACAATCAAACTAATAGGTCTGTCTGGCCGCGCAGCGGCACCCCTACCGAAATAATCATCAGCCCACTCTTGCATCTCATCCGGAACGGCAGTGAAGGTTGAGAGAAGAAACGGAGGAACCCACGGTTCTGGAGCCTTAGAGAAAATTCTGTCCAGGTTACTGGACAGATTGTGATATTGAAAGAGAAATTTCTCCGGCAGCTTCTCTCTTATTATTTGTAACGCCGCTTCTTTTGAAGGGGCGTTTAAGGCCTCTGCGGCAGCGTCGTTAGCTGTCTGGCAACCTCCTCTAGCACTTCTTCCGTCGATTTGGAATTCTCCCCATTCGAGGGTGTCACCGTCCTTGTCGATGTAGGACTTGACGTCGGACGATGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGATACCAGGTCGAAGAGTCTCTGATTTGTGCACACGAATTTGCCTTCGAATTGGAGAAGCACGTGGAGGTGAGGTTGCCCATTTTCATGAAGCTCTCTGCATATTTTGATGAACTTCTTATTTGTTGGGGTGTTTAGGGCTTTTATTTGGGAAAGGGTTTCTTCCTTGGTTAATGTGCATAGGGGGTATGTGAGGAAATAATTTTTGGAAGAAATACGGAATCGTTTTGGAACGGATGGCATTTTTGTAATAATAGGGAAGTCACCAATTGATGTTTGCTCTCAAAGTGCTTATGAATTGGTGACATTGGTGACAATATATAGAAGTTCCATAAGGGGCAAAAGCGGCCATCCGTTCTAATATT
Gene Information
NCBI Accession
|
YP_009508418.1
|
Location
|
199-948 |
Protein Name
|
CP |
Coding Region
|
ATGCCCAAGCGGGACGCTCCATGGCGCATAATGGCGGGGACCTCAAAGGTTTCCCGCTCTGTCAATTATTCACCCCGTGGTGGTCCTAAATTGGACAAGGCATCCGCTTGGGTCAACAGGCCCATGTACAGGAAGCCCAGGATTTACCGCACTTTGAGAAGCCCAGACGTCCCTAAGGGATGTGAAGGCCCGTGCAAGGTCCAGTCATATGAGTCTCGTCATGACGTTTCCCATGTTGGCAAGGTGATCTGTGTGTCAGATGTTACACGTGGCAACGGTATTACTCACCGCGTGGGTAAGCGATTCTGCGTCAAGTCTGTGTATATATTAGGGAAGATCTGGATGGATGAGACCATCAAGTTGAAGAACCACACGAACAGCGTCATGTTCTGGTTGGTTAGGGACCGGAGACCTTATGGAACGCCTATGGATTTTGGCCAAGTGTTCAACATGTTCGACAACGAGCCCAGTACTGCCACCGTTAAGAACGATCTTCGAGATCGTTTTCAGGTTTTGCACAAGTTCTACGCCAAGGTTACGGGTGGACAGTATGCCAGCAACGAGCAGGCTATCGTGAAGCGCTTCTGGAAGGTCAACAATTACGTGGTCTACAACCATCAGGAAGCAGGGAAATATGAGAATCATACTGAAAACGGTCTGTTATTGTATATGGCATGTACTCATGCCTCTAATCCCGTGTATGCTACATTGAAAATTCGGATCTATTTTTATGATTCGATAACAAATTAA |
Protein Sequence
|
MPKRDAPWRIMAGTSKVSRSVNYSPRGGPKLDKASAWVNRPMYRKPRIYRTLRSPDVPKGCEGPCKVQSYESRHDVSHVGKVICVSDVTRGNGITHRVGKRFCVKSVYILGKIWMDETIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATVKNDLRDRFQVLHKFYAKVTGGQYASNEQAIVKRFWKVNNYVVYNHQEAGKYENHTENGLLLYMACTHASNPVYATLKIRIYFYDSITN |
NCBI Accession
|
YP_009508419.1
|
Location
|
945-1343 |
Protein Name
|
REN |
Coding Region
|
ATGGATTCACGCACAGGGGAGAACATCACTGTGTCTCAGGCAGAGAATTCCGTTTTTATCTGGGAGGTTCCAAATCCCCTTTATTTCAGGATCGACCATGTGGAGGATCCGATATACACAATGACAAGGATATACCACATCCAGATACGGTTCAACCACAACGTCAGGAAGGCGCTGGGTCTACACAAAGCCTACCTGAACTTCCAAGTCTGGACGACCTCGATTCGAGCTTCTGGGACGACATATTTACATAGATTTAAGCATTTAGTTAATATGTATTTAGATAATATAGGTGTTATAGGACTTAACCATGTAATAAGAGCTGTTCGATTCGCAACAGACAAATATTATGTAAATTATGTACTCGAGAATCATGAAATAAAATTCAAATTTTATTAA |
Protein Sequence
|
MDSRTGENITVSQAENSVFIWEVPNPLYFRIDHVEDPIYTMTRIYHIQIRFNHNVRKALGLHKAYLNFQVWTTSIRASGTTYLHRFKHLVNMYLDNIGVIGLNHVIRAVRFATDKYYVNYVLENHEIKFKFY |
NCBI Accession
|
YP_009508420.1
|
Location
|
1090-1479 |
Protein Name
|
TRAP |
Coding Region
|
ATGCGAAATTCATCTTCCTCGACGCCCCCCTCTATCAAACCACAACACAAAATCGCGAAGAAGAGGGCAATTCGTCGTAAGCGCATTGACCTCAATTGCGGCTGTTCCATCTTCCTCCACATCAACTGCGCAAATCATGGATTCACGCACAGGGGAGAACATCACTGTGTCTCAGGCAGAGAATTCCGTTTTTATCTGGGAGGTTCCAAATCCCCTTTATTTCAGGATCGACCATGTGGAGGATCCGATATACACAATGACAAGGATATACCACATCCAGATACGGTTCAACCACAACGTCAGGAAGGCGCTGGGTCTACACAAAGCCTACCTGAACTTCCAAGTCTGGACGACCTCGATTCGAGCTTCTGGGACGACATATTTACATAG |
Protein Sequence
|
MRNSSSSTPPSIKPQHKIAKKRAIRRKRIDLNCGCSIFLHINCANHGFTHRGEHHCVSGREFRFYLGGSKSPLFQDRPCGGSDIHNDKDIPHPDTVQPQRQEGAGSTQSLPELPSLDDLDSSFWDDIFT |
NCBI Accession
|
YP_009508421.1
|
Location
|
1400-2479 |
Protein Name
|
Rep |
Coding Region
|
ATGCCATCCGTTCCAAAACGATTCCGTATTTCTTCCAAAAATTATTTCCTCACATACCCCCTATGCACATTAACCAAGGAAGAAACCCTTTCCCAAATAAAAGCCCTAAACACCCCAACAAATAAGAAGTTCATCAAAATATGCAGAGAGCTTCATGAAAATGGGCAACCTCACCTCCACGTGCTTCTCCAATTCGAAGGCAAATTCGTGTGCACAAATCAGAGACTCTTCGACCTGGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCATCGTCCGACGTCAAGTCCTACATCGACAAGGACGGTGACACCCTCGAATGGGGAGAATTCCAAATCGACGGAAGAAGTGCTAGAGGAGGTTGCCAGACAGCTAACGACGCTGCCGCAGAGGCCTTAAACGCCCCTTCAAAAGAAGCGGCGTTACAAATAATAAGAGAGAAGCTGCCGGAGAAATTTCTCTTTCAATATCACAATCTGTCCAGTAACCTGGACAGAATTTTCTCTAAGGCTCCAGAACCGTGGGTTCCTCCGTTTCTTCTCTCAACCTTCACTGCCGTTCCGGATGAGATGCAAGAGTGGGCTGATGATTATTTCGGTAGGGGTGCCGCTGCGCGGCCAGACAGACCTATTAGTTTGATTGTCGAGGGTGATTCGAGAACGGGAAAGACGATGTGGGCTCGTGCATTAGGCCCACATAATTATTTAAGTGGACACCTAGACTTCAATTCTAGGGTTTACTCAAATGAAGCGGAATACAACGTCATTGATGACGTTGCCCCGCAATATCTAAAGATGAAGCACTGGAAAGAGCTGATTGGGGCCCAAAAAGACTGGCAGTCCAACTGTAAATATGGAAAGCCAGTTCAAATTAAAGGAGGCATTCCATCAATCGTGCTATGCAATCCAGGCGAGGGGGCTAGCTATAAAGACTTCCTCAACAAAGAGGAAAATGCTTCACTGAGAGCGTGGACAATACACAATGCGAAATTCATCTTCCTCGACGCCCCCCTCTATCAAACCACAACACAAAATCGCGAAGAAGAGGGCAATTCGTCGTAA |
Protein Sequence
|
MPSVPKRFRISSKNYFLTYPLCTLTKEETLSQIKALNTPTNKKFIKICRELHENGQPHLHVLLQFEGKFVCTNQRLFDLVSPTRSAHFHPNIQGAKSSSDVKSYIDKDGDTLEWGEFQIDGRSARGGCQTANDAAAEALNAPSKEAALQIIREKLPEKFLFQYHNLSSNLDRIFSKAPEPWVPPFLLSTFTAVPDEMQEWADDYFGRGAAARPDRPISLIVEGDSRTGKTMWARALGPHNYLSGHLDFNSRVYSNEAEYNVIDDVAPQYLKMKHWKELIGAQKDWQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKDFLNKEENASLRAWTIHNAKFIFLDAPLYQTTTQNREEEGNSS |
NCBI Accession
|
YP_009508422.1
|
Location
|
2062-2325 |
Protein Name
|
AC4 protein |
Coding Region
|
ATGAAAATGGGCAACCTCACCTCCACGTGCTTCTCCAATTCGAAGGCAAATTCGTGTGCACAAATCAGAGACTCTTCGACCTGGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCATCGTCCGACGTCAAGTCCTACATCGACAAGGACGGTGACACCCTCGAATGGGGAGAATTCCAAATCGACGGAAGAAGTGCTAGAGGAGGTTGCCAGACAGCTAACGACGCTGCCGCAGAGGCCTTAA |
Protein Sequence
|
MKMGNLTSTCFSNSKANSCAQIRDSSTWYPQPGQHISIRTFRELNHRPTSSPTSTRTVTPSNGENSKSTEEVLEEVARQLTTLPQRP |