Senna leaf curl virus
Basic Information
Genus |
Begomovirus
|
NCBI Assembly |
GCF_001706945.1 |
Isolate |
India |
Release date |
2016/8/18 |
Submitter |
Kumar,J., Alok,A., Tuli,R. |
Host |
|
Vector |
|
Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGCGATTTTTTAGTGCTCCGCAATCTCTCATCCTCCAATCATAACTCTCGCTGAAAGCTTAAATAATAGTATAATGCATTATAAGTACTTAGTCTCCAAGTTTCTCTTTGCACCATGTGGGATCCACTTTTGAACCAGTTCCCGGAGACTGTCTTTGGGTTGAGATGTATGCTTGCGGTTAAGTATTTGCAGTTAGTCGAGCGTACGTATTCACCCGATACAGTAGGTTACGAGCTTATTCGTGATCTGATCTCTGTAGTCCGTGCTCGGAAGTATGCCGAAGCGACCACTCGATATGAGCATTTCAACGCCCGGATGGAAAGTACGCCGTCGGTTGAACTTCGACAGCCCGTATGCCCGTGCCGCTGTCCCTCAGATTGTCCCCGTCATCTCAAAGTCTCGGGCGTGGGCCAACAGGCCCATGAACAGGAAGCCCAGGATTTACAGAATGTACAGAAGTCCGGATGTTCCTAAGGGGTGTGAGGGTCCGTGTAAGGTCCAGTCATTCGAGTCTAGACATGATGTAGTTCACATTGGTAAAGTTATGTGTATTAGTGATGTAACTAGGGGTACTGGTTTAACGCATAGGGTAGGTAAGCGTTTCTGTGTTAAGTCCGTCTATGTGTTAGGGAAGATATGGATGGATGAGAATATCAAGACTAAGAACCACACTAACAATGTAATGTTCTTTCTGGTACGTGACCGTCGTCCTGTTGACAAGCCTCAGGATTTTGGCGAGGTCTTCAACATGTTTGACAACGAGCCAAGTACTGCAACTGTGAAGAATGTTCATCGTGACCGTTATCAGGTTCTTCGTAAATGGCATGCTACGGTTACCGGTGGGCAGTATGCTGCTAAAGAACAAGCTCTCGTGAAGAAGTTTATTAGGGTTAACAATTATGTCGTTTATAACCAGCAAGAAGCTGGCAAGTATGAGAACCATAGTGAGAATGCTTTGATGTTGTACATGGCATGCACCCATGCCTCCAATCCAGTGTATGCAACTCTAAAGATACGAATCTATTTCTACGATTCGGTCACCAATTAATAAAGATTTAGTTTTATTATCATTGAACTTTGTACATATATTGTTTGCGTTAATACATTCCACAGTACATGATTCACTGCCCTAATTACATTGTTTATGCTAATTACACCCAAACTATCTATAAATTTCAAAACTTGGGTCCTAAATACCCTTAAGAAACGACCAATCTGAAGGTGTGAGGTCGTCCAGATGCGGAAGGTTAGGAAACATTGGTGAATCCCCAGTGCTTTCCTCAGGTTGTAGTTGAACTGTATTCTTGCCGTTATTATGTCGTGGTTCGACAGAAAAGGCCTGCTGTGGTGGTCTGTCATCTTGAAATATAGGGGATTTGGAACCGTCCAGATAAATGCGCCATTCTCGGCTTGAGCTGCAGTGATGTACTCCCCTGTGCGTAAATCCATGGTTGTGGCAGCCAATGGCCAGGAAATAGGAGCACCCACAATCAAGGTCCACTCTCCTCCGTCGGAACCTCTTCTTGGCTCTGTTGTGCTGAACTTTGATGGGTACCTGAGTAGAGTGGGCTCCTGAGGGTGACGAAGATCGCATTTCTTTGAGCCCAATTTTTGAGTGCGATGTTCTTTTCCTCGTCTAAGTACTCTTTATAGCTCGAATTGGGCCCTGGATTGCAGAGGAAGATTGTTGGTATCCCGCCTTTAATTTGAACTGGCTTTCCGTACTTCGTGTTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCCTTAAAGTGCTTTAGATAGTGCGGATCGACGTCATCAATGACGTTATACCATGACTCGTTGCTGTACACTTTAGGACTCAGATCTAGGTGTCCACAAAGGTAATTATGCGGACCCAATGACCTGGCCCACATCGTCTTCCCCGTCCGACTATCACCCTCAACGACAATGCTCACCGGTCTCAGGGGCCGCGCAGCGGCATCGACAACATTTTCTGCAGCCCACTCTTCGAGTTCTTCTGGAACTCGATCAAAAGAAGAAGAAGAAAAAGGAGAAATATAAACCTCCAACGGAGGTGTAAAAATCTTCTCTAAATTGGCATTTAAATTATGATATTGTAATACAAAGTCTTTAGGGGCTAGCTCCCTAAGTATTCTAAGAGCTTCCGACTTGCTTCCCGCGTTAAGTGCTGCTGCGTAAGCGTCGTTTGCTGTTTGCTGTCCCCCTCTTGCAGATCTTCCGTCGACCTGGAACTCTCCCCATTCGATTGTGTCTCCGTCCTTATCGATATAGGACTTGACATCGGAGCTGGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGATGGGGATACCAAGTCGAAGAATCGCTGATTCTGGCACTTGTATTTCCCTTCGAACTGGATGAGCACGTGTAGATGAGGTTCCCCATTCTCGTGCATTTCCCTGCAGATCTTGATGAATTTTTTATTTGTTGGGGTTTCTAGGTTTTTTAATTGGGAAAGTGCTTGTTCTTTGGTGAGGGAACATTTGGGATACGTTATAAAATAATTCTTCGAATTTATAAGAAAACGTTTGGGAGGCATGTTGACTATATAGAGGACCCGATTGACCGCTCTTGCAACTCTCCCCTGTATATTGGGTCTCAATATATAGTGAGACCCAAATGGCACGCTCGTAATTTTTTAGTGAAACTCAAAAATCTAACGCTCCAAAAGCGGCCATCCGTATAATATT
Gene Information
NCBI Accession
|
YP_009270636.1
|
Location
|
127-486 |
Gene Name
|
AV2 |
Protein Name
|
movement protein |
Coding Region
|
ATGTGGGATCCACTTTTGAACCAGTTCCCGGAGACTGTCTTTGGGTTGAGATGTATGCTTGCGGTTAAGTATTTGCAGTTAGTCGAGCGTACGTATTCACCCGATACAGTAGGTTACGAGCTTATTCGTGATCTGATCTCTGTAGTCCGTGCTCGGAAGTATGCCGAAGCGACCACTCGATATGAGCATTTCAACGCCCGGATGGAAAGTACGCCGTCGGTTGAACTTCGACAGCCCGTATGCCCGTGCCGCTGTCCCTCAGATTGTCCCCGTCATCTCAAAGTCTCGGGCGTGGGCCAACAGGCCCATGAACAGGAAGCCCAGGATTTACAGAATGTACAGAAGTCCGGATGTTCCTAA |
Protein Sequence
|
MWDPLLNQFPETVFGLRCMLAVKYLQLVERTYSPDTVGYELIRDLISVVRARKYAEATTRYEHFNARMESTPSVELRQPVCPCRCPSDCPRHLKVSGVGQQAHEQEAQDLQNVQKSGCS |
NCBI Accession
|
YP_009270637.1
|
Location
|
287-1060 |
Gene Name
|
AV1 |
Protein Name
|
coat protein |
Coding Region
|
ATGCCGAAGCGACCACTCGATATGAGCATTTCAACGCCCGGATGGAAAGTACGCCGTCGGTTGAACTTCGACAGCCCGTATGCCCGTGCCGCTGTCCCTCAGATTGTCCCCGTCATCTCAAAGTCTCGGGCGTGGGCCAACAGGCCCATGAACAGGAAGCCCAGGATTTACAGAATGTACAGAAGTCCGGATGTTCCTAAGGGGTGTGAGGGTCCGTGTAAGGTCCAGTCATTCGAGTCTAGACATGATGTAGTTCACATTGGTAAAGTTATGTGTATTAGTGATGTAACTAGGGGTACTGGTTTAACGCATAGGGTAGGTAAGCGTTTCTGTGTTAAGTCCGTCTATGTGTTAGGGAAGATATGGATGGATGAGAATATCAAGACTAAGAACCACACTAACAATGTAATGTTCTTTCTGGTACGTGACCGTCGTCCTGTTGACAAGCCTCAGGATTTTGGCGAGGTCTTCAACATGTTTGACAACGAGCCAAGTACTGCAACTGTGAAGAATGTTCATCGTGACCGTTATCAGGTTCTTCGTAAATGGCATGCTACGGTTACCGGTGGGCAGTATGCTGCTAAAGAACAAGCTCTCGTGAAGAAGTTTATTAGGGTTAACAATTATGTCGTTTATAACCAGCAAGAAGCTGGCAAGTATGAGAACCATAGTGAGAATGCTTTGATGTTGTACATGGCATGCACCCATGCCTCCAATCCAGTGTATGCAACTCTAAAGATACGAATCTATTTCTACGATTCGGTCACCAATTAA |
Protein Sequence
|
MPKRPLDMSISTPGWKVRRRLNFDSPYARAAVPQIVPVISKSRAWANRPMNRKPRIYRMYRSPDVPKGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGTGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNNVMFFLVRDRRPVDKPQDFGEVFNMFDNEPSTATVKNVHRDRYQVLRKWHATVTGGQYAAKEQALVKKFIRVNNYVVYNQQEAGKYENHSENALMLYMACTHASNPVYATLKIRIYFYDSVTN |
NCBI Accession
|
YP_009270638.1
|
Location
|
638-994 |
Gene Name
|
AC5 |
Protein Name
|
ac5 |
Coding Region
|
ATGGGTGCATGCCATGTACAACATCAAAGCATTCTCACTATGGTTCTCATACTTGCCAGCTTCTTGCTGGTTATAAACGACATAATTGTTAACCCTAATAAACTTCTTCACGAGAGCTTGTTCTTTAGCAGCATACTGCCCACCGGTAACCGTAGCATGCCATTTACGAAGAACCTGATAACGGTCACGATGAACATTCTTCACAGTTGCAGTACTTGGCTCGTTGTCAAACATGTTGAAGACCTCGCCAAAATCCTGAGGCTTGTCAACAGGACGACGGTCACGTACCAGAAAGAACATTACATTGTTAGTGTGGTTCTTAGTCTTGATATTCTCATCCATCCATATCTTCCCTAA |
Protein Sequence
|
MGACHVQHQSILTMVLILASFLLVINDIIVNPNKLLHESLFFSSILPTGNRSMPFTKNLITVTMNILHSCSTWLVVKHVEDLAKILRLVNRTTVTYQKEHYIVSVVLSLDILIHPYLP |
NCBI Accession
|
YP_009270639.1
|
Location
|
1057-1461 |
Gene Name
|
AC3 |
Protein Name
|
replication enhancer protein |
Coding Region
|
ATGGATTTACGCACAGGGGAGTACATCACTGCAGCTCAAGCCGAGAATGGCGCATTTATCTGGACGGTTCCAAATCCCCTATATTTCAAGATGACAGACCACCACAGCAGGCCTTTTCTGTCGAACCACGACATAATAACGGCAAGAATACAGTTCAACTACAACCTGAGGAAAGCACTGGGGATTCACCAATGTTTCCTAACCTTCCGCATCTGGACGACCTCACACCTTCAGATTGGTCGTTTCTTAAGGGTATTTAGGACCCAAGTTTTGAAATTTATAGATAGTTTGGGTGTAATTAGCATAAACAATGTAATTAGGGCAGTGAATCATGTACTGTGGAATGTATTAACGCAAACAATATATGTACAAAGTTCAATGATAATAAAACTAAATCTTTATTAA |
Protein Sequence
|
MDLRTGEYITAAQAENGAFIWTVPNPLYFKMTDHHSRPFLSNHDIITARIQFNYNLRKALGIHQCFLTFRIWTTSHLQIGRFLRVFRTQVLKFIDSLGVISINNVIRAVNHVLWNVLTQTIYVQSSMIIKLNLY |
NCBI Accession
|
YP_009270640.1
|
Location
|
1202-1606 |
Gene Name
|
AC2 |
Protein Name
|
transcription activator protein |
Coding Region
|
ATGCGATCTTCGTCACCCTCAGGAGCCCACTCTACTCAGGTACCCATCAAAGTTCAGCACAACAGAGCCAAGAAGAGGTTCCGACGGAGGAGAGTGGACCTTGATTGTGGGTGCTCCTATTTCCTGGCCATTGGCTGCCACAACCATGGATTTACGCACAGGGGAGTACATCACTGCAGCTCAAGCCGAGAATGGCGCATTTATCTGGACGGTTCCAAATCCCCTATATTTCAAGATGACAGACCACCACAGCAGGCCTTTTCTGTCGAACCACGACATAATAACGGCAAGAATACAGTTCAACTACAACCTGAGGAAAGCACTGGGGATTCACCAATGTTTCCTAACCTTCCGCATCTGGACGACCTCACACCTTCAGATTGGTCGTTTCTTAAGGGTATTTAG |
Protein Sequence
|
MRSSSPSGAHSTQVPIKVQHNRAKKRFRRRRVDLDCGCSYFLAIGCHNHGFTHRGVHHCSSSREWRIYLDGSKSPIFQDDRPPQQAFSVEPRHNNGKNTVQLQPEESTGDSPMFPNLPHLDDLTPSDWSFLKGI |
NCBI Accession
|
YP_009270641.1
|
Location
|
1503-2591 |
Gene Name
|
AC1 |
Protein Name
|
replication associated protein |
Coding Region
|
ATGCCTCCCAAACGTTTTCTTATAAATTCGAAGAATTATTTTATAACGTATCCCAAATGTTCCCTCACCAAAGAACAAGCACTTTCCCAATTAAAAAACCTAGAAACCCCAACAAATAAAAAATTCATCAAGATCTGCAGGGAAATGCACGAGAATGGGGAACCTCATCTACACGTGCTCATCCAGTTCGAAGGGAAATACAAGTGCCAGAATCAGCGATTCTTCGACTTGGTATCCCCATCCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCCAGCTCCGATGTCAAGTCCTATATCGATAAGGACGGAGACACAATCGAATGGGGAGAGTTCCAGGTCGACGGAAGATCTGCAAGAGGGGGACAGCAAACAGCAAACGACGCTTACGCAGCAGCACTTAACGCGGGAAGCAAGTCGGAAGCTCTTAGAATACTTAGGGAGCTAGCCCCTAAAGACTTTGTATTACAATATCATAATTTAAATGCCAATTTAGAGAAGATTTTTACACCTCCGTTGGAGGTTTATATTTCTCCTTTTTCTTCTTCTTCTTTTGATCGAGTTCCAGAAGAACTCGAAGAGTGGGCTGCAGAAAATGTTGTCGATGCCGCTGCGCGGCCCCTGAGACCGGTGAGCATTGTCGTTGAGGGTGATAGTCGGACGGGGAAGACGATGTGGGCCAGGTCATTGGGTCCGCATAATTACCTTTGTGGACACCTAGATCTGAGTCCTAAAGTGTACAGCAACGAGTCATGGTATAACGTCATTGATGACGTCGATCCGCACTATCTAAAGCACTTTAAGGAATTCATGGGGGCCCAAAGGGACTGGCAATCAAACACGAAGTACGGAAAGCCAGTTCAAATTAAAGGCGGGATACCAACAATCTTCCTCTGCAATCCAGGGCCCAATTCGAGCTATAAAGAGTACTTAGACGAGGAAAAGAACATCGCACTCAAAAATTGGGCTCAAAGAAATGCGATCTTCGTCACCCTCAGGAGCCCACTCTACTCAGGTACCCATCAAAGTTCAGCACAACAGAGCCAAGAAGAGGTTCCGACGGAGGAGAGTGGACCTTGA |
Protein Sequence
|
MPPKRFLINSKNYFITYPKCSLTKEQALSQLKNLETPTNKKFIKICREMHENGEPHLHVLIQFEGKYKCQNQRFFDLVSPSRSAHFHPNIQGAKSSSDVKSYIDKDGDTIEWGEFQVDGRSARGGQQTANDAYAAALNAGSKSEALRILRELAPKDFVLQYHNLNANLEKIFTPPLEVYISPFSSSSFDRVPEELEEWAAENVVDAAARPLRPVSIVVEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNESWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEYLDEEKNIALKNWAQRNAIFVTLRSPLYSGTHQSSAQQSQEEVPTEESGP |
NCBI Accession
|
YP_009270642.1
|
Location
|
2135-2437 |
Gene Name
|
AC4 |
Protein Name
|
silencing suppressor |
Coding Region
|
ATGGGGAACCTCATCTACACGTGCTCATCCAGTTCGAAGGGAAATACAAGTGCCAGAATCAGCGATTCTTCGACTTGGTATCCCCATCCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCCAGCTCCGATGTCAAGTCCTATATCGATAAGGACGGAGACACAATCGAATGGGGAGAGTTCCAGGTCGACGGAAGATCTGCAAGAGGGGGACAGCAAACAGCAAACGACGCTTACGCAGCAGCACTTAACGCGGGAAGCAAGTCGGAAGCTCTTAGAATACTTAGGGAGCTAG |
Protein Sequence
|
MGNLIYTCSSSSKGNTSARISDSSTWYPHPGQHISIRTFRELNPAPMSSPISIRTETQSNGESSRSTEDLQEGDSKQQTTLTQQHLTREASRKLLEYLGS |