Sauropus leaf curl virus
Basic Information
Genus |
Begomovirus
|
NCBI Assembly |
GCF_002823285.1 |
Isolate |
Thailand: Kamphaengsaen |
Release date |
2018/8/25 |
Submitter |
Shih,S.L., Tsai,W.S., Lee,L.M., Kenyon,L. |
Host |
|
Vector |
|
Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGCAAATTTTTGTCCCCTTTCGCTTTAGTGGTTCCCACGCACTATCTTTGGTCGGCCAATGAGAATGCGCGCTCAAAGCTTAGATATCCGTGTGGTCCCGTCATAAATAACTTCCCCTCGAAGGTAAATTCAAAATGTGGGATCCATTAGTAAACGAGTTTCCCGAAACCGTTCACGGCTTTAGGTGTATGTTAGCAGTCAAATACCTGCAGTTAGTAGAGAAGACGTATTCGCCTGACACATTAGGGCACGATCTTATACGAGATTTAATATCAGTAATTCGTGCTCGCAATTATGTCGAAGCGACCCGCCGATATAGTCATTTCAACTCCCGCCTCGAAGGTACGACGTCGTCTGAACTTCGACACCCCCGTGATGAGCCGTGCTGCTGCCCCCACTGTCCTCGTCACCAACAAAAAAAGGATATGGACCAACAGGCCCATGTATCGCAAGCCCAGATTCTACAGAGTGTACAAAAGCCCTGATGTGCCCCGTGGTTGTGAGGGTCCCTGTAAGGTCCAGTCGTTCGAGAAGAAGCATGATGTGGGTCATACTGGTACATTATTATGTGTGTCGGATGTTACTCGTGGAAATGGGCTTACCCATCGTGTTGGTAAGAGGTTTTGTATTAAGTCTATTTACATTCTGGGTAAGTTATGGATGGATGAGAACATCAAGACGAAGAATCACACGAACACAGTCATGTTCTGGTTAGTTAGGGATAGGCGTCCTATGACAACGCCCTATGGGTTCGGCGAGGCATTCAACATGTACGACAATGAGCCCAGTACAGCCACTATCAAGAACGATCTTCGTGATCGTCTGCAGGTGCTGCATAGGTTTCAAGCCACGCTCACGGGAGGTCAGTACGCGTGCAAGGAACAGGTCATGGTGAAGAGGTTCTGGAAGATCAACAATCACGTCGTGTACAACCATCAGGAGAAGGCTGCTTACGAGAATCACAATGAGAACGCATTAATATTGTATATGGCATGTACTCATGCCTCTAACCCCGTGTATGCTACACTGAAGATCCGCATCTACTTCTATGATTCAGTGCAGAATTAATAAAGATTATATTTTATTATATGTGTCAATTGAGCATCAATTGTGCCCTCCAGTACATCGTACAGTACATGATCAATAGCCCTAATTACATTGTTAATGCTAATAACTCCTAATGTATCTAAATACTTCATACATTGAATATTAAATACTCTTAAGAAACGCCCAGTCTGAGGACGTAAACGAGTCCAGATCTGGCAGATCAGGAAACATTGGTGCATCCCCAGTGCTTTCCTCAGGTTGTAGTTGAACTGGACCTGGATTGTTATTACGTCGTGGTCCGTCAGGAATGGCCTCTCCAGGTGCTTGGTAATCTTGAAATAGAGGGGATTTCTGACCGTCCAGGTATAGACGCCACTCTCTGCCTGAGTTGCAGTGATGTACTCCCCGGTGCGAAAATCCATGGTTTGCACAGGTAATTGGGAAGAAGTACGAGCACCCGCAAGGTAGATCAACTCTCCTCCTGCGGATCGTCTTCTTCTTGGCTATTCTGTGCTGGACTTTGATGGGTACCTGAGTACAGTTGCTCTGAGAGGAAGATGAATTTTGCATTCTTCAGTGCCCACGATTTTAGAGCTGAATTTTTATCCTCATCCAGATATTCCTTATATGATGATGTTGGACCAGGATTGCATAGGAAGATTGTCGGAATGCCCCCTTTAATTTGAATTGGCTTCCCGTACTTGGTATTGCTTTGCCAATCCCTCTGGGCCCCCATGAATTCTTTAAAGTGTTTCAGATAGTGGGGGTCAACATCATCGATGACGTTATACCATGCGTCATTAGAGTAGATCTTGGGGCTCAAGTCTAGATGCCCACAAAGGTAATTATGTGGGCCTAGTGATCTGGCCCACATTGTTTTCCCAGTTCTACTCTCTCCCTCTATCACTATACTCACCGGTCTCCAAGGCCGCGCAGCGGCATCCCTGACATTCTCCTCCGCCCAACATTCAAGTTCTTCCGGAACTTGATCGAATGAAGAAGCTAAAAAAGGAGAAACAAAAACCTCTACGGGAGGTGAAAAAATTCTATCTAAATTAGCATTTAAATTATGAAATTGAAAAATATAATCTTTTGGGAGTTTTTCCCTTATTATATTTAATGCTGCTTCTTTAGAACCTGCATTTAAGGCTTCTGCGCATGCGTCGTTAGCATTCTGGCAGCCCCCTCTAGCACTTCTAGCGTCGATCTGGAATTCTCCCCAGTCGAGGGTGTCTCCGTCCTTGTCCAGATAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGAATGTTTGGATGGAAATGTGCTGCCCTGGTTGGGGACACCAGGTCGAAGAATCTGTTATTCGAGCAGTTGTATTTCCCTTCGAATTGGATGAGCACGTGGAGATGAGGGCTCCCATCTTCGTGTAACTCTCTGCAGATTTTGATATATTTTTTATTTGTTGGGGTTTTTAGGTTTTGGATTTGGGAAAGTGCTTCTTCCTTTGTGAGTGAGCACTGAGGATATGTAAGAAAATAATTTTTTGCTTTAATAGAAAAACGTCCGGCTCTAGGCATTTTGGAATTGGGGGGCACTCTAAGTCTCTGCAATCGGGGGAAATGGGGGGCAATTTATATGTGCCCCCCAAATGGCATTCTCGTAATTCCTAAAAGAAAGTCAAATTCAAATTCAAATTCTAAAAGCGGCCATCCGTATAATATT
Gene Information
NCBI Accession
|
YP_009506455.1
|
Location
|
147-497 |
Gene Name
|
V2 |
Protein Name
|
pre-coat protein |
Coding Region
|
ATGTGGGATCCATTAGTAAACGAGTTTCCCGAAACCGTTCACGGCTTTAGGTGTATGTTAGCAGTCAAATACCTGCAGTTAGTAGAGAAGACGTATTCGCCTGACACATTAGGGCACGATCTTATACGAGATTTAATATCAGTAATTCGTGCTCGCAATTATGTCGAAGCGACCCGCCGATATAGTCATTTCAACTCCCGCCTCGAAGGTACGACGTCGTCTGAACTTCGACACCCCCGTGATGAGCCGTGCTGCTGCCCCCACTGTCCTCGTCACCAACAAAAAAAGGATATGGACCAACAGGCCCATGTATCGCAAGCCCAGATTCTACAGAGTGTACAAAAGCCCTGA |
Protein Sequence
|
MWDPLVNEFPETVHGFRCMLAVKYLQLVEKTYSPDTLGHDLIRDLISVIRARNYVEATRRYSHFNSRLEGTTSSELRHPRDEPCCCPHCPRHQQKKDMDQQAHVSQAQILQSVQKP |
NCBI Accession
|
YP_009506456.1
|
Location
|
307-1080 |
Gene Name
|
V1 |
Protein Name
|
coat protein |
Coding Region
|
ATGTCGAAGCGACCCGCCGATATAGTCATTTCAACTCCCGCCTCGAAGGTACGACGTCGTCTGAACTTCGACACCCCCGTGATGAGCCGTGCTGCTGCCCCCACTGTCCTCGTCACCAACAAAAAAAGGATATGGACCAACAGGCCCATGTATCGCAAGCCCAGATTCTACAGAGTGTACAAAAGCCCTGATGTGCCCCGTGGTTGTGAGGGTCCCTGTAAGGTCCAGTCGTTCGAGAAGAAGCATGATGTGGGTCATACTGGTACATTATTATGTGTGTCGGATGTTACTCGTGGAAATGGGCTTACCCATCGTGTTGGTAAGAGGTTTTGTATTAAGTCTATTTACATTCTGGGTAAGTTATGGATGGATGAGAACATCAAGACGAAGAATCACACGAACACAGTCATGTTCTGGTTAGTTAGGGATAGGCGTCCTATGACAACGCCCTATGGGTTCGGCGAGGCATTCAACATGTACGACAATGAGCCCAGTACAGCCACTATCAAGAACGATCTTCGTGATCGTCTGCAGGTGCTGCATAGGTTTCAAGCCACGCTCACGGGAGGTCAGTACGCGTGCAAGGAACAGGTCATGGTGAAGAGGTTCTGGAAGATCAACAATCACGTCGTGTACAACCATCAGGAGAAGGCTGCTTACGAGAATCACAATGAGAACGCATTAATATTGTATATGGCATGTACTCATGCCTCTAACCCCGTGTATGCTACACTGAAGATCCGCATCTACTTCTATGATTCAGTGCAGAATTAA |
Protein Sequence
|
MSKRPADIVISTPASKVRRRLNFDTPVMSRAAAPTVLVTNKKRIWTNRPMYRKPRFYRVYKSPDVPRGCEGPCKVQSFEKKHDVGHTGTLLCVSDVTRGNGLTHRVGKRFCIKSIYILGKLWMDENIKTKNHTNTVMFWLVRDRRPMTTPYGFGEAFNMYDNEPSTATIKNDLRDRLQVLHRFQATLTGGQYACKEQVMVKRFWKINNHVVYNHQEKAAYENHNENALILYMACTHASNPVYATLKIRIYFYDSVQN |
NCBI Accession
|
YP_009506457.1
|
Location
|
1077-1481 |
Gene Name
|
C3 |
Protein Name
|
replication enhancement protein |
Coding Region
|
ATGGATTTTCGCACCGGGGAGTACATCACTGCAACTCAGGCAGAGAGTGGCGTCTATACCTGGACGGTCAGAAATCCCCTCTATTTCAAGATTACCAAGCACCTGGAGAGGCCATTCCTGACGGACCACGACGTAATAACAATCCAGGTCCAGTTCAACTACAACCTGAGGAAAGCACTGGGGATGCACCAATGTTTCCTGATCTGCCAGATCTGGACTCGTTTACGTCCTCAGACTGGGCGTTTCTTAAGAGTATTTAATATTCAATGTATGAAGTATTTAGATACATTAGGAGTTATTAGCATTAACAATGTAATTAGGGCTATTGATCATGTACTGTACGATGTACTGGAGGGCACAATTGATGCTCAATTGACACATATAATAAAATATAATCTTTATTAA |
Protein Sequence
|
MDFRTGEYITATQAESGVYTWTVRNPLYFKITKHLERPFLTDHDVITIQVQFNYNLRKALGMHQCFLICQIWTRLRPQTGRFLRVFNIQCMKYLDTLGVISINNVIRAIDHVLYDVLEGTIDAQLTHIIKYNLY |
NCBI Accession
|
YP_009506458.1
|
Location
|
1222-1629 |
Gene Name
|
C2 |
Protein Name
|
transcriptional activation protein |
Coding Region
|
ATGCAAAATTCATCTTCCTCTCAGAGCAACTGTACTCAGGTACCCATCAAAGTCCAGCACAGAATAGCCAAGAAGAAGACGATCCGCAGGAGGAGAGTTGATCTACCTTGCGGGTGCTCGTACTTCTTCCCAATTACCTGTGCAAACCATGGATTTTCGCACCGGGGAGTACATCACTGCAACTCAGGCAGAGAGTGGCGTCTATACCTGGACGGTCAGAAATCCCCTCTATTTCAAGATTACCAAGCACCTGGAGAGGCCATTCCTGACGGACCACGACGTAATAACAATCCAGGTCCAGTTCAACTACAACCTGAGGAAAGCACTGGGGATGCACCAATGTTTCCTGATCTGCCAGATCTGGACTCGTTTACGTCCTCAGACTGGGCGTTTCTTAAGAGTATTTAA |
Protein Sequence
|
MQNSSSSQSNCTQVPIKVQHRIAKKKTIRRRRVDLPCGCSYFFPITCANHGFSHRGVHHCNSGREWRLYLDGQKSPLFQDYQAPGEAIPDGPRRNNNPGPVQLQPEESTGDAPMFPDLPDLDSFTSSDWAFLKSI |
NCBI Accession
|
YP_009506459.1
|
Location
|
1529-2617 |
Gene Name
|
C1 |
Protein Name
|
replication-associated protein |
Coding Region
|
ATGCCTAGAGCCGGACGTTTTTCTATTAAAGCAAAAAATTATTTTCTTACATATCCTCAGTGCTCACTCACAAAGGAAGAAGCACTTTCCCAAATCCAAAACCTAAAAACCCCAACAAATAAAAAATATATCAAAATCTGCAGAGAGTTACACGAAGATGGGAGCCCTCATCTCCACGTGCTCATCCAATTCGAAGGGAAATACAACTGCTCGAATAACAGATTCTTCGACCTGGTGTCCCCAACCAGGGCAGCACATTTCCATCCAAACATTCAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTATCTGGACAAGGACGGAGACACCCTCGACTGGGGAGAATTCCAGATCGACGCTAGAAGTGCTAGAGGGGGCTGCCAGAATGCTAACGACGCATGCGCAGAAGCCTTAAATGCAGGTTCTAAAGAAGCAGCATTAAATATAATAAGGGAAAAACTCCCAAAAGATTATATTTTTCAATTTCATAATTTAAATGCTAATTTAGATAGAATTTTTTCACCTCCCGTAGAGGTTTTTGTTTCTCCTTTTTTAGCTTCTTCATTCGATCAAGTTCCGGAAGAACTTGAATGTTGGGCGGAGGAGAATGTCAGGGATGCCGCTGCGCGGCCTTGGAGACCGGTGAGTATAGTGATAGAGGGAGAGAGTAGAACTGGGAAAACAATGTGGGCCAGATCACTAGGCCCACATAATTACCTTTGTGGGCATCTAGACTTGAGCCCCAAGATCTACTCTAATGACGCATGGTATAACGTCATCGATGATGTTGACCCCCACTATCTGAAACACTTTAAAGAATTCATGGGGGCCCAGAGGGATTGGCAAAGCAATACCAAGTACGGGAAGCCAATTCAAATTAAAGGGGGCATTCCGACAATCTTCCTATGCAATCCTGGTCCAACATCATCATATAAGGAATATCTGGATGAGGATAAAAATTCAGCTCTAAAATCGTGGGCACTGAAGAATGCAAAATTCATCTTCCTCTCAGAGCAACTGTACTCAGGTACCCATCAAAGTCCAGCACAGAATAGCCAAGAAGAAGACGATCCGCAGGAGGAGAGTTGA |
Protein Sequence
|
MPRAGRFSIKAKNYFLTYPQCSLTKEEALSQIQNLKTPTNKKYIKICRELHEDGSPHLHVLIQFEGKYNCSNNRFFDLVSPTRAAHFHPNIQGAKSSSDVKSYLDKDGDTLDWGEFQIDARSARGGCQNANDACAEALNAGSKEAALNIIREKLPKDYIFQFHNLNANLDRIFSPPVEVFVSPFLASSFDQVPEELECWAEENVRDAAARPWRPVSIVIEGESRTGKTMWARSLGPHNYLCGHLDLSPKIYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLDEDKNSALKSWALKNAKFIFLSEQLYSGTHQSPAQNSQEEDDPQEES |
NCBI Accession
|
YP_009506460.1
|
Location
|
2203-2460 |
Gene Name
|
C4 |
Protein Name
|
C4 protein |
Coding Region
|
ATGGGAGCCCTCATCTCCACGTGCTCATCCAATTCGAAGGGAAATACAACTGCTCGAATAACAGATTCTTCGACCTGGTGTCCCCAACCAGGGCAGCACATTTCCATCCAAACATTCAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTATCTGGACAAGGACGGAGACACCCTCGACTGGGGAGAATTCCAGATCGACGCTAGAAGTGCTAGAGGGGGCTGCCAGAATGCTAACGACGCATGCGCAGAAGCCTTAA |
Protein Sequence
|
MGALISTCSSNSKGNTTARITDSSTWCPQPGQHISIQTFRELNPAPTSSPIWTRTETPSTGENSRSTLEVLEGAARMLTTHAQKP |