Ramie mosaic Yunnan virus


Basic Information

Genus Begomovirus
NCBI Assembly GCF_001698395.1
Isolate China
Release date 2016/8/3
Submitter Zhao,L.L., Zhong,J., Zhang,X.Y., Yin,Y.Y., Zhang,Z.K., Ding,M.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_030699
ACCGGATGGCCGCGATTTTTTTTAAAGTGGGCCCCCCCACGTGGTGCTACGCTCCACTCAAAACGCTCCCTTAAAGCTTATTTAGTGCGTGTACCTCTATAAAGAACTTGCTAGGCAAGTTCCACATGCAAAGATGTGGGATCCGTTAGTCAATGAATTCCCCGAGACTGTTCACGGTCTACGGTGTATGTTGGCTATAAAATATCTACAGTTACTCGAGAATACGTACGCCCCGGATACGGTGGGATACGATCTTATACGTGACTTGATCCTTGTCATACGAGCTCGTAACTATGTCGAAGCGTCCCGCCGATATAGTCATTTCAACTCCCGCATCCAAGGTACGACGTCGGTTGAACTTCGACAGCCCAGTCTCCAGTCGTGCAACTGCCCCCACTGTCCTCGTCACAAACAGAAAGCGGTCATGGACTTACAGGCCCATGTACCGGAAGCCCAAGATATACAGAATGTATAGAAGTCCAGATATTCCTCGTGGGTGTGAAGGCCCATGTAAGGTCCAGTCATTTGAACAGCGTCATGATATAGCCCATACTGGTAAAGTTCTGTGCATTTCAGATGTTACCCGTGGTGGTGGGCTGACTCATCGCACGGGCAAGAGGTTTTGTGTGAAGTCCGTTTATGTTTTGGGGAAGGTCTGGATGGATGAGAATATTAAGGTTAAAAATCATACAAATACAGTTATGTTTTTTGTTGTTCGTGATAGAAGGCCTTATGGAACCCCTCAGGATTTTGGTCAGGTGTTTAACATGTATGATAATGAGCCTAGTACTGCAACTGTGAAGAACGATCTTAGGGATCGTTTTCAAGTGATCCGTCGTTTTAATTCAACTGTGACTGGCGGTCAATATGCGTCTAAGGAACAGGCTTTGGTTAAGAAGTACATGAAGGTCAATAATCATGTAGTTTATAATCATCAGGAAGCTGCGAAGTATGAGAACCATACGGAAAATGCTTTGTTATTGTATATGGCCTGTACACATGCCAGTAATCCTGTGTATGCAACCTTGAAAATCAGGATCTATTTTTATGATTCTGTTGCGAATTAATAAATATTATATTTTATTATATGAGTCAATTGAACATCAATTGTCCCTTCAAATACATCGTACATAACATTTGAAATTGCTCTAATTACATTATTCAAACTAATAATCCCCACGTTGTCTAAATATTTCATACATTGATATTTAAATACTCTTAAGAAACGCCCAGTCTGAGGTTGTAAACGAGTCCAGATTCGGCAGATCAGAAAACATTGGTGTATCCCCAATGCTTTCCTCAGGTTGTAATTGAACTGGACTTGGAGAGTGATGATGTCGAAGTTGTTCAGGAACGGTCTCACGTCGTGTTTCGTGATCTTGAAATACAGGGGATTCGGCACCTGCCAGATATACACGCCATTCTCGGCTTGAATTGCAGTGATGTACTCCCCTGTGCGTGAATCCATGTGATGCGCAGTTGATACTGATGTAGTATGTGCACCCGCAAGGTAAATCAACCCTCCGTCTGCGGATGGATTTCTTCTTGGCTATTCTGTGCTGAACCTTGATTGGCACCTGAGTACAGTGGCTCGGTAAGGGTGAAGAATTCTGCATTTTTCAGAGCCCACTCTTTTAAAGCTGAGTGCTTGTCCTCGTCCAAGTACTCTTTATATGATGATGTTGGCCCTGGATTGCATAGGAAGATAGTGGGAATACCTCCTTTAATTTGAATTGGTTTCCCGTATTTTGTGTTGCTCTGCCAGTCTCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGATAATGCGGGTCTACGTCATCAACCACGTTATACCACGCATCATTGCTGTATACCTTTGGACTCAAATCTAGGTGTCCACATAGGTAATTATGGGGCCCTAATGACCTGGCCCACATGGTCTTCCCTGTCCGACTCTCACCCTCTATGACAATACTCATGGGTCTCCAAGGCCGCGCAGCGGCAACCCTTACATTTTCAGAAACCCAACACTCTAGTTGTTCTGGAACTTGATTAAAAGAAGATGAAAGAAAAGGACATTTAAATACCTCTAATGGAGGTGCAAAAATTCTATCTAAATTGGCATTTAAATTATGAAACTGTAAAACATAATCCTTTGGAGCTAATTCCTTAATCACATTAAGAGCGTCTGACTTACTTCCGCTGTTAATCGCCTTGGCGTAAGCGTCATTTGCGGATTGTTGACCCCCTCGTGCAGATCGTCCGTCGATCTGAAACTCTCCCCATTCGAGGGTGTCTCCGTCCTTATCCAAATATGACTTAACGTCGGAACTTGACTTAGCTCCCTGAATGTTCGGATGGAAATGTGTTGACCTGCTTGGGGAGACCAGGTCGAAGAATCTGTTATTTGTGCATTGGTATTTGCCTTCGAATTGCACAAGCACATGGAGATGAGGACTCCCATCTGCATGCAATTCTCGACAGATCTTAATGAATAATTTATTCACTGGTGTAGCTAGGTTTTTTAATTGGGAAAGTGCTTCCTCTTTTGTGAGAGAGCATTTGGGATATGTTATGAAGTAATTTTTGGCATTTATTCTAAAACGACGTGGGACTGGCATTTTGAGAGTCGTTTTGATTCGGGGTTCAACCATCTATCGCATATAATCGGTGTAATGGGGGTCAATATATACTTGTACACCTAATGGCAATATCGTAAATATTAAAAGTTACTATAGAAATTCAAAATTCGAAAAGCGGCCATCCGTCTAATATT

Gene Information

NCBI Accession YP_009269401.1
Location 134-475
Protein Name AV2 protein
Coding Region ATGTGGGATCCGTTAGTCAATGAATTCCCCGAGACTGTTCACGGTCTACGGTGTATGTTGGCTATAAAATATCTACAGTTACTCGAGAATACGTACGCCCCGGATACGGTGGGATACGATCTTATACGTGACTTGATCCTTGTCATACGAGCTCGTAACTATGTCGAAGCGTCCCGCCGATATAGTCATTTCAACTCCCGCATCCAAGGTACGACGTCGGTTGAACTTCGACAGCCCAGTCTCCAGTCGTGCAACTGCCCCCACTGTCCTCGTCACAAACAGAAAGCGGTCATGGACTTACAGGCCCATGTACCGGAAGCCCAAGATATACAGAATGTATAG
Protein Sequence MWDPLVNEFPETVHGLRCMLAIKYLQLLENTYAPDTVGYDLIRDLILVIRARNYVEASRRYSHFNSRIQGTTSVELRQPSLQSCNCPHCPRHKQKAVMDLQAHVPEAQDIQNV

NCBI Accession YP_009269402.1
Location 294-1067
Protein Name coat protein
Coding Region ATGTCGAAGCGTCCCGCCGATATAGTCATTTCAACTCCCGCATCCAAGGTACGACGTCGGTTGAACTTCGACAGCCCAGTCTCCAGTCGTGCAACTGCCCCCACTGTCCTCGTCACAAACAGAAAGCGGTCATGGACTTACAGGCCCATGTACCGGAAGCCCAAGATATACAGAATGTATAGAAGTCCAGATATTCCTCGTGGGTGTGAAGGCCCATGTAAGGTCCAGTCATTTGAACAGCGTCATGATATAGCCCATACTGGTAAAGTTCTGTGCATTTCAGATGTTACCCGTGGTGGTGGGCTGACTCATCGCACGGGCAAGAGGTTTTGTGTGAAGTCCGTTTATGTTTTGGGGAAGGTCTGGATGGATGAGAATATTAAGGTTAAAAATCATACAAATACAGTTATGTTTTTTGTTGTTCGTGATAGAAGGCCTTATGGAACCCCTCAGGATTTTGGTCAGGTGTTTAACATGTATGATAATGAGCCTAGTACTGCAACTGTGAAGAACGATCTTAGGGATCGTTTTCAAGTGATCCGTCGTTTTAATTCAACTGTGACTGGCGGTCAATATGCGTCTAAGGAACAGGCTTTGGTTAAGAAGTACATGAAGGTCAATAATCATGTAGTTTATAATCATCAGGAAGCTGCGAAGTATGAGAACCATACGGAAAATGCTTTGTTATTGTATATGGCCTGTACACATGCCAGTAATCCTGTGTATGCAACCTTGAAAATCAGGATCTATTTTTATGATTCTGTTGCGAATTAA
Protein Sequence MSKRPADIVISTPASKVRRRLNFDSPVSSRATAPTVLVTNRKRSWTYRPMYRKPKIYRMYRSPDIPRGCEGPCKVQSFEQRHDIAHTGKVLCISDVTRGGGLTHRTGKRFCVKSVYVLGKVWMDENIKVKNHTNTVMFFVVRDRRPYGTPQDFGQVFNMYDNEPSTATVKNDLRDRFQVIRRFNSTVTGGQYASKEQALVKKYMKVNNHVVYNHQEAAKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSVAN

NCBI Accession YP_009269403.1
Location 1064-1468
Protein Name AC3 protein
Coding Region ATGGATTCACGCACAGGGGAGTACATCACTGCAATTCAAGCCGAGAATGGCGTGTATATCTGGCAGGTGCCGAATCCCCTGTATTTCAAGATCACGAAACACGACGTGAGACCGTTCCTGAACAACTTCGACATCATCACTCTCCAAGTCCAGTTCAATTACAACCTGAGGAAAGCATTGGGGATACACCAATGTTTTCTGATCTGCCGAATCTGGACTCGTTTACAACCTCAGACTGGGCGTTTCTTAAGAGTATTTAAATATCAATGTATGAAATATTTAGACAACGTGGGGATTATTAGTTTGAATAATGTAATTAGAGCAATTTCAAATGTTATGTACGATGTATTTGAAGGGACAATTGATGTTCAATTGACTCATATAATAAAATATAATATTTATTAA
Protein Sequence MDSRTGEYITAIQAENGVYIWQVPNPLYFKITKHDVRPFLNNFDIITLQVQFNYNLRKALGIHQCFLICRIWTRLQPQTGRFLRVFKYQCMKYLDNVGIISLNNVIRAISNVMYDVFEGTIDVQLTHIIKYNIY

NCBI Accession YP_009269404.1
Location 1209-1616
Protein Name AC2 protein
Coding Region ATGCAGAATTCTTCACCCTTACCGAGCCACTGTACTCAGGTGCCAATCAAGGTTCAGCACAGAATAGCCAAGAAGAAATCCATCCGCAGACGGAGGGTTGATTTACCTTGCGGGTGCACATACTACATCAGTATCAACTGCGCATCACATGGATTCACGCACAGGGGAGTACATCACTGCAATTCAAGCCGAGAATGGCGTGTATATCTGGCAGGTGCCGAATCCCCTGTATTTCAAGATCACGAAACACGACGTGAGACCGTTCCTGAACAACTTCGACATCATCACTCTCCAAGTCCAGTTCAATTACAACCTGAGGAAAGCATTGGGGATACACCAATGTTTTCTGATCTGCCGAATCTGGACTCGTTTACAACCTCAGACTGGGCGTTTCTTAAGAGTATTTAA
Protein Sequence MQNSSPLPSHCTQVPIKVQHRIAKKKSIRRRRVDLPCGCTYYISINCASHGFTHRGVHHCNSSREWRVYLAGAESPVFQDHETRRETVPEQLRHHHSPSPVQLQPEESIGDTPMFSDLPNLDSFTTSDWAFLKSI

NCBI Accession YP_009269405.1
Location 1516-2637
Protein Name Rep protein
Coding Region ATGGTTGAACCCCGAATCAAAACGACTCTCAAAATGCCAGTCCCACGTCGTTTTAGAATAAATGCCAAAAATTACTTCATAACATATCCCAAATGCTCTCTCACAAAAGAGGAAGCACTTTCCCAATTAAAAAACCTAGCTACACCAGTGAATAAATTATTCATTAAGATCTGTCGAGAATTGCATGCAGATGGGAGTCCTCATCTCCATGTGCTTGTGCAATTCGAAGGCAAATACCAATGCACAAATAACAGATTCTTCGACCTGGTCTCCCCAAGCAGGTCAACACATTTCCATCCGAACATTCAGGGAGCTAAGTCAAGTTCCGACGTTAAGTCATATTTGGATAAGGACGGAGACACCCTCGAATGGGGAGAGTTTCAGATCGACGGACGATCTGCACGAGGGGGTCAACAATCCGCAAATGACGCTTACGCCAAGGCGATTAACAGCGGAAGTAAGTCAGACGCTCTTAATGTGATTAAGGAATTAGCTCCAAAGGATTATGTTTTACAGTTTCATAATTTAAATGCCAATTTAGATAGAATTTTTGCACCTCCATTAGAGGTATTTAAATGTCCTTTTCTTTCATCTTCTTTTAATCAAGTTCCAGAACAACTAGAGTGTTGGGTTTCTGAAAATGTAAGGGTTGCCGCTGCGCGGCCTTGGAGACCCATGAGTATTGTCATAGAGGGTGAGAGTCGGACAGGGAAGACCATGTGGGCCAGGTCATTAGGGCCCCATAATTACCTATGTGGACACCTAGATTTGAGTCCAAAGGTATACAGCAATGATGCGTGGTATAACGTGGTTGATGACGTAGACCCGCATTATCTAAAGCACTTTAAAGAATTCATGGGGGCCCAAAGAGACTGGCAGAGCAACACAAAATACGGGAAACCAATTCAAATTAAAGGAGGTATTCCCACTATCTTCCTATGCAATCCAGGGCCAACATCATCATATAAAGAGTACTTGGACGAGGACAAGCACTCAGCTTTAAAAGAGTGGGCTCTGAAAAATGCAGAATTCTTCACCCTTACCGAGCCACTGTACTCAGGTGCCAATCAAGGTTCAGCACAGAATAGCCAAGAAGAAATCCATCCGCAGACGGAGGGTTGA
Protein Sequence MVEPRIKTTLKMPVPRRFRINAKNYFITYPKCSLTKEEALSQLKNLATPVNKLFIKICRELHADGSPHLHVLVQFEGKYQCTNNRFFDLVSPSRSTHFHPNIQGAKSSSDVKSYLDKDGDTLEWGEFQIDGRSARGGQQSANDAYAKAINSGSKSDALNVIKELAPKDYVLQFHNLNANLDRIFAPPLEVFKCPFLSSSFNQVPEQLECWVSENVRVAAARPWRPMSIVIEGESRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVVDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLDEDKHSALKEWALKNAEFFTLTEPLYSGANQGSAQNSQEEIHPQTEG

NCBI Accession YP_009269406.1
Location 2157-2453
Protein Name AC4 protein
Coding Region ATGCAGATGGGAGTCCTCATCTCCATGTGCTTGTGCAATTCGAAGGCAAATACCAATGCACAAATAACAGATTCTTCGACCTGGTCTCCCCAAGCAGGTCAACACATTTCCATCCGAACATTCAGGGAGCTAAGTCAAGTTCCGACGTTAAGTCATATTTGGATAAGGACGGAGACACCCTCGAATGGGGAGAGTTTCAGATCGACGGACGATCTGCACGAGGGGGTCAACAATCCGCAAATGACGCTTACGCCAAGGCGATTAACAGCGGAAGTAAGTCAGACGCTCTTAATGTGA
Protein Sequence MQMGVLISMCLCNSKANTNAQITDSSTWSPQAGQHISIRTFRELSQVPTLSHIWIRTETPSNGESFRSTDDLHEGVNNPQMTLTPRRLTAEVSQTLLM