Pumpkin yellow mosaic virus
Basic Information
| Genus |
Begomovirus
|
| NCBI Assembly |
GCF_000874505.1 |
| Isolate |
Malaysia: Negeri Sembilan |
| Release date |
2015/2/13 |
| Submitter |
Tsai,W.S., Shih,S.L., Roff,M.M.N., Green,S.K. |
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGCTTTTTTTATGTGGGCCCTCGACCAATGAAATTCACGCTACATGGCTTATTTATTACATGGGGACCATTAAATAGACTTCCTCACCAAGTTTTGATCCACACCATGTGGGATCCACTTCTGCACGAATTTCCTGAAAGTGTTCATGGTCTAAGGTGCATGCTAGCGGTGAAATATCTTCAGGAAGTGGAAAAAACATATTCTCCGGACACAGTCGGCTACGATCTTGTCCGCGATCTTATTCTTGTTCTCCGCGCAAAGAACTATGTCGAAGCGACCAGCCGATATTATCATTTCAACTCCCGCGTCGAAGGTACGCCGACGTCTCAACTTCGACAGCCCCTATGTTTCCCGTGCAGTTGTCCCCATTGCCCGCGTCACAAAGGGAAAGGCCTGGACAAACAGGCCGATGAACAGAAAACCCAAGATGTACAGAATGTATAGAAGTCCCGACGTGCCAAGGGGCTGTGAAGGCCCTTGTAAAGTTCAATCCTTTGAATCTAGGCACGATGTCTCTCATATTGGGAAGGTATTGTGTATCAGTGATGTTACACGAGGAACCGGACTCACACATCGCGTTGGGAAGCGATTCTGTGTGAAATCTGTTTTTGTTTTGGGAAAGATATGGGTGGATGAAAATATCAAGACTAAAAATCACACTAATAGCGTTATATTGTTTTTGGTTCGAGACCGTCGTCCTACAAGAACTCCACAAGATTTTGGGGAGGTTTTTAATATGTTCGACAATGAACCGAGCACTGCAACGGTGAAGAACATGCATCGTGATCGATACCAAGTGATACGCAAATGGCATGCCACTGTGACGGGAGGAACATACGCATCAAGGGAGCAAGCATTAGTTAGGAAGTTTGTTAGAGTCAATAATTATGTTGTCTACAATCAACAAGAGGCCGGCAAGTATGAGAATCATACTGAAAATGCATTAATGTTGTATATGGCCTGTACTCACGCATCGAACCCTGTATACGCGACTTTGAAAATTCGGATCTATTTTTATGATTCGGTAACAAATTAATATATATTCAATTTCACATTATATGTTGTCCATACATCAATTGTCTTTTCCAATACATCGTCTAAAACGTGATAAACTGCTCTTAATACATTGTAAATACTAATCACCCCTAACATATCCAAGTACTTAAGGACTTGGGTCTTAAAGACTCTCAAGAAAATCCCAGTCGGAGGGCGTAAGCCCGTCCAGATCTGGAACATTAGAACACATTTGTGAAGTCCCAGTGCTTTCCGCAGTTTGTGGTTGAACATTACATGCATTTTGATTATGTCGTGTTCCGTGAGACAAGGTCTGATGTCGTGTTTCAATATTTTGAAATAGAGGGGATTTGGAACTTCCCAGATATATACGCCACTCTCTGCTCGATCCACAGTGATGTACTCCCCTGTGCGTGAATCCGTGATCATGGCAATTTATTGACATGTAATACGAGCATCCGCACGGTAGATCAATTCGTCTGCGCCTGATATTCTTCTTCTTGTTGTGCGGTAGCGATTTTTTCGCGACCGGAATAGAGTGGTTCTTTGATTGTGAGGAAGATTGCATTCTTTAATGCCCACTGCTTCAGTGCTGAATTCTTATCCTCTTCCAAGTACTCTTTATATGATGACGTTGGTCCTGGATTGCATAGGAAGATTGTCGGGATACCACCTTTAATTTGAATTGGCTTTCCGTACTTCGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTGAAATGCTTTAAATAGTGGGGGTCGACGTCATCAATGACGTTGTACCATGCATCGTTGCTGTACACCTTTGGACTCAGATCTAGATGACCGCACAGATAATTATGTGGGCCCAATGAACGAGCCCACATTGTCCTTCCTGTACGACTCTCACCCTCTATGACAATACTTATGGGTCTATTTGGCCGCGCAGCGGAACACCCCACGTTCTCAGAAACCCACTCTTCAAGTTCTTCTGGAACTTGATCGAATGAAGAAGAAAGAAAAGGACAAACAAAAACCTCTAAAGGAGGTGCAAAAATCCTATCTAAATTAGAATTTAAATTATGAAATTGAAAAATATAATCTTTTGGGAGTTTCTCCCTTATTATACTTAGTGCTGCTTCTTTGGAACCTGCGTTTAAGGCTTCTGCGCATGCGTCGTTAGAATTCTGGCACCCTCCTCTAGCACTTCGACCGTCGATCTGGAATTCTCCCCAGTCGAGGGTGTCTCCGTCCTTGTCCAGGTAGGATTTGACGTCGGAGCTGGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGTAGACTTGGTTGGGGATACCAAGTCGAAGAATCTGTTATTCGTGCAGTTGCATTTGCCTTCGAATTGAATGAGCACATGGAGATGAGGGCTCCCATCTTCGTGCAGCTCTCTACAGATTTTGATATATTTTTTATTTGTTGGGGTTTGTAGAGGTTTTAATTGGGAAAGTGCTTCTTCCTTGGTGAGGGAGCACTGTGGATAAGTGAGAAAATAATTTTTGGCTTTAATAGAAAAACGTCCGGCTCTAGGCATTTTGGAATTGGGGGGCACTCTAAGTCTCTGCAATCGGGGGAACTGGGGGGCAATTTATATGTGCCCCCCAAATGGCAAAATAGTAATTATGTAAATAATTACTTTAATTCAAAATGAATAAAGCGGCCATCCGTATAATATT
Gene Information
|
NCBI Accession
|
YP_001974387.1
|
|
Location
|
40-456 |
|
Protein Name
|
precoat protein |
|
Coding Region
|
ATGAAATTCACGCTACATGGCTTATTTATTACATGGGGACCATTAAATAGACTTCCTCACCAAGTTTTGATCCACACCATGTGGGATCCACTTCTGCACGAATTTCCTGAAAGTGTTCATGGTCTAAGGTGCATGCTAGCGGTGAAATATCTTCAGGAAGTGGAAAAAACATATTCTCCGGACACAGTCGGCTACGATCTTGTCCGCGATCTTATTCTTGTTCTCCGCGCAAAGAACTATGTCGAAGCGACCAGCCGATATTATCATTTCAACTCCCGCGTCGAAGGTACGCCGACGTCTCAACTTCGACAGCCCCTATGTTTCCCGTGCAGTTGTCCCCATTGCCCGCGTCACAAAGGGAAAGGCCTGGACAAACAGGCCGATGAACAGAAAACCCAAGATGTACAGAATGTATAG |
|
Protein Sequence
|
MKFTLHGLFITWGPLNRLPHQVLIHTMWDPLLHEFPESVHGLRCMLAVKYLQEVEKTYSPDTVGYDLVRDLILVLRAKNYVEATSRYYHFNSRVEGTPTSQLRQPLCFPCSCPHCPRHKGKGLDKQADEQKTQDVQNV |
|
NCBI Accession
|
YP_001974388.1
|
|
Location
|
278-1048 |
|
Protein Name
|
coat protein |
|
Coding Region
|
ATGTCGAAGCGACCAGCCGATATTATCATTTCAACTCCCGCGTCGAAGGTACGCCGACGTCTCAACTTCGACAGCCCCTATGTTTCCCGTGCAGTTGTCCCCATTGCCCGCGTCACAAAGGGAAAGGCCTGGACAAACAGGCCGATGAACAGAAAACCCAAGATGTACAGAATGTATAGAAGTCCCGACGTGCCAAGGGGCTGTGAAGGCCCTTGTAAAGTTCAATCCTTTGAATCTAGGCACGATGTCTCTCATATTGGGAAGGTATTGTGTATCAGTGATGTTACACGAGGAACCGGACTCACACATCGCGTTGGGAAGCGATTCTGTGTGAAATCTGTTTTTGTTTTGGGAAAGATATGGGTGGATGAAAATATCAAGACTAAAAATCACACTAATAGCGTTATATTGTTTTTGGTTCGAGACCGTCGTCCTACAAGAACTCCACAAGATTTTGGGGAGGTTTTTAATATGTTCGACAATGAACCGAGCACTGCAACGGTGAAGAACATGCATCGTGATCGATACCAAGTGATACGCAAATGGCATGCCACTGTGACGGGAGGAACATACGCATCAAGGGAGCAAGCATTAGTTAGGAAGTTTGTTAGAGTCAATAATTATGTTGTCTACAATCAACAAGAGGCCGGCAAGTATGAGAATCATACTGAAAATGCATTAATGTTGTATATGGCCTGTACTCACGCATCGAACCCTGTATACGCGACTTTGAAAATTCGGATCTATTTTTATGATTCGGTAACAAATTAA |
|
Protein Sequence
|
MSKRPADIIISTPASKVRRRLNFDSPYVSRAVVPIARVTKGKAWTNRPMNRKPKMYRMYRSPDVPRGCEGPCKVQSFESRHDVSHIGKVLCISDVTRGTGLTHRVGKRFCVKSVFVLGKIWVDENIKTKNHTNSVILFLVRDRRPTRTPQDFGEVFNMFDNEPSTATVKNMHRDRYQVIRKWHATVTGGTYASREQALVRKFVRVNNYVVYNQQEAGKYENHTENALMLYMACTHASNPVYATLKIRIYFYDSVTN |
|
NCBI Accession
|
YP_001974389.1
|
|
Location
|
1045-1455 |
|
Protein Name
|
C3 protein |
|
Coding Region
|
ATGATCACGGATTCACGCACAGGGGAGTACATCACTGTGGATCGAGCAGAGAGTGGCGTATATATCTGGGAAGTTCCAAATCCCCTCTATTTCAAAATATTGAAACACGACATCAGACCTTGTCTCACGGAACACGACATAATCAAAATGCATGTAATGTTCAACCACAAACTGCGGAAAGCACTGGGACTTCACAAATGTGTTCTAATGTTCCAGATCTGGACGGGCTTACGCCCTCCGACTGGGATTTTCTTGAGAGTCTTTAAGACCCAAGTCCTTAAGTACTTGGATATGTTAGGGGTGATTAGTATTTACAATGTATTAAGAGCAGTTTATCACGTTTTAGACGATGTATTGGAAAAGACAATTGATGTATGGACAACATATAATGTGAAATTGAATATATATTAA |
|
Protein Sequence
|
MITDSRTGEYITVDRAESGVYIWEVPNPLYFKILKHDIRPCLTEHDIIKMHVMFNHKLRKALGLHKCVLMFQIWTGLRPPTGIFLRVFKTQVLKYLDMLGVISIYNVLRAVYHVLDDVLEKTIDVWTTYNVKLNIY |
|
NCBI Accession
|
YP_001974390.1
|
|
Location
|
1190-1594 |
|
Protein Name
|
C2 protein |
|
Coding Region
|
ATGCAATCTTCCTCACAATCAAAGAACCACTCTATTCCGGTCGCGAAAAAATCGCTACCGCACAACAAGAAGAAGAATATCAGGCGCAGACGAATTGATCTACCGTGCGGATGCTCGTATTACATGTCAATAAATTGCCATGATCACGGATTCACGCACAGGGGAGTACATCACTGTGGATCGAGCAGAGAGTGGCGTATATATCTGGGAAGTTCCAAATCCCCTCTATTTCAAAATATTGAAACACGACATCAGACCTTGTCTCACGGAACACGACATAATCAAAATGCATGTAATGTTCAACCACAAACTGCGGAAAGCACTGGGACTTCACAAATGTGTTCTAATGTTCCAGATCTGGACGGGCTTACGCCCTCCGACTGGGATTTTCTTGAGAGTCTTTAA |
|
Protein Sequence
|
MQSSSQSKNHSIPVAKKSLPHNKKKNIRRRRIDLPCGCSYYMSINCHDHGFTHRGVHHCGSSREWRIYLGSSKSPLFQNIETRHQTLSHGTRHNQNACNVQPQTAESTGTSQMCSNVPDLDGLTPSDWDFLESL |
|
NCBI Accession
|
YP_001974391.1
|
|
Location
|
1497-2582 |
|
Protein Name
|
replication-associated protein C1 |
|
Coding Region
|
ATGCCTAGAGCCGGACGTTTTTCTATTAAAGCCAAAAATTATTTTCTCACTTATCCACAGTGCTCCCTCACCAAGGAAGAAGCACTTTCCCAATTAAAACCTCTACAAACCCCAACAAATAAAAAATATATCAAAATCTGTAGAGAGCTGCACGAAGATGGGAGCCCTCATCTCCATGTGCTCATTCAATTCGAAGGCAAATGCAACTGCACGAATAACAGATTCTTCGACTTGGTATCCCCAACCAAGTCTACACATTTCCATCCGAACATTCAGGGAGCTAAATCCAGCTCCGACGTCAAATCCTACCTGGACAAGGACGGAGACACCCTCGACTGGGGAGAATTCCAGATCGACGGTCGAAGTGCTAGAGGAGGGTGCCAGAATTCTAACGACGCATGCGCAGAAGCCTTAAACGCAGGTTCCAAAGAAGCAGCACTAAGTATAATAAGGGAGAAACTCCCAAAAGATTATATTTTTCAATTTCATAATTTAAATTCTAATTTAGATAGGATTTTTGCACCTCCTTTAGAGGTTTTTGTTTGTCCTTTTCTTTCTTCTTCATTCGATCAAGTTCCAGAAGAACTTGAAGAGTGGGTTTCTGAGAACGTGGGGTGTTCCGCTGCGCGGCCAAATAGACCCATAAGTATTGTCATAGAGGGTGAGAGTCGTACAGGAAGGACAATGTGGGCTCGTTCATTGGGCCCACATAATTATCTGTGCGGTCATCTAGATCTGAGTCCAAAGGTGTACAGCAACGATGCATGGTACAACGTCATTGATGACGTCGACCCCCACTATTTAAAGCATTTCAAAGAATTCATGGGGGCCCAAAGGGACTGGCAAAGCAACACGAAGTACGGAAAGCCAATTCAAATTAAAGGTGGTATCCCGACAATCTTCCTATGCAATCCAGGACCAACGTCATCATATAAAGAGTACTTGGAAGAGGATAAGAATTCAGCACTGAAGCAGTGGGCATTAAAGAATGCAATCTTCCTCACAATCAAAGAACCACTCTATTCCGGTCGCGAAAAAATCGCTACCGCACAACAAGAAGAAGAATATCAGGCGCAGACGAATTGA |
|
Protein Sequence
|
MPRAGRFSIKAKNYFLTYPQCSLTKEEALSQLKPLQTPTNKKYIKICRELHEDGSPHLHVLIQFEGKCNCTNNRFFDLVSPTKSTHFHPNIQGAKSSSDVKSYLDKDGDTLDWGEFQIDGRSARGGCQNSNDACAEALNAGSKEAALSIIREKLPKDYIFQFHNLNSNLDRIFAPPLEVFVCPFLSSSFDQVPEELEEWVSENVGCSAARPNRPISIVIEGESRTGRTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLEEDKNSALKQWALKNAIFLTIKEPLYSGREKIATAQQEEEYQAQTN |
|
NCBI Accession
|
YP_001974392.1
|
|
Location
|
2168-2425 |
|
Protein Name
|
C4 protein |
|
Coding Region
|
ATGGGAGCCCTCATCTCCATGTGCTCATTCAATTCGAAGGCAAATGCAACTGCACGAATAACAGATTCTTCGACTTGGTATCCCCAACCAAGTCTACACATTTCCATCCGAACATTCAGGGAGCTAAATCCAGCTCCGACGTCAAATCCTACCTGGACAAGGACGGAGACACCCTCGACTGGGGAGAATTCCAGATCGACGGTCGAAGTGCTAGAGGAGGGTGCCAGAATTCTAACGACGCATGCGCAGAAGCCTTAA |
|
Protein Sequence
|
MGALISMCSFNSKANATARITDSSTWYPQPSLHISIRTFRELNPAPTSNPTWTRTETPSTGENSRSTVEVLEEGARILTTHAQKP |