Polygala garcinii virus


Basic Information

Genus Begomovirus
Isolate ZA-1-1-12
Vector
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

MG001959
TAATATTACCGGATGGCCGCCGTTTGTCCTATGTTTGGCGGGTGATTTGACAGTTTGTCTCTTTTGCTTTGTTTGTCCAATGCGATGAATGCATTGGGGGTTATTTATAACCGTGTGGGCCCGTTATATACTTAGGTATGAAGTAGTTATTTTGAATTTGAAATGTGGGATCCATTATTGCACGATTTTCCGGAAAGCCTCCATGGCTTTCGGTGTATGCTTGCTGTAAAGTACCTTCTTTGTGTCTCGTCTCTGTACCCTGTACAGTCTGTGGGGTTCGAGTTGCTGAGGGATTGCATTAGTGCGGTGCGCACTCGTTCGTATGACGAAGGGTCGTGTAAGTATAGTGCCCTTTGTGCGAAGGTTAGGTCCACGTCTGAAGGGGAACTCACCCAGACGAGGACCCCGCTATGTTGTTGCCCGCACTGCCCCCGTCATATCGGCCGTGACCGAGTGGAAACGGAGACCAAGGAACCGGAACCCTAAGTCGTCTAAGAAGGATGTTGTTCCTTTCGGCTGCGAGGGTCCTTGTAAGGTTGAATCGTTTTCTGATAGGTATGAAGTGAAGCATACCGGTACTGTTTGTTGTTTGTCTCAGATTTCCCGTGGGAATGGTTTGAAGCAACGCATTGGGAAGAGGATTACTATTAAAAGTATTTACTTACTTGGTAAGGTGTGGTTGGACGGTAGTAACCGCATTTCCAATCATACTAATGTCTGTATATTTTTTGTCGTTAGGGATAGGCGTCCTTCTGTTACTCCTATCAATTTTGGTAGTTTATTTGATATGTTTGACGGTGAACCTGCTACGGCTTCTGTGAAGTCGGATCACCGTGATAGGTTTCAGGTGTTGTATCGTTTTCAGGTTTCTGTGTCTGGAGGGCAGTATTCTAGTCGTGATCAGACAGTTTTCCAGAAGTTTGTGAACCTCAATCATAGGGTTGTTTTTGATAATCAAGATGATGGTGTTTACGGGAATCATGATCAGAATGCGCTTCTTGTTTACATGGCTTGTTGCCATTCTACTAATTGGCTGTATTCTAGTATGAAAGCTAAAGTGTATTTCTATGATTCTGCAATGAATTAATAAAGTTTATATTTTATATCATGTTCTTCGTTTACAGATATGGTGTTCTCTAACACCTCGTACAGCACATGATCCACAGCTCTAATAACCGTGTTTAAACTGTAAACTCCTAATGAATCTAAAAACTTAAGAACTTGGTATCTAAAGACCCTCAAGAAACGCGATGTCTGAGGCTGTAGGCGGGTCCAGGTGCGAAAATTGAGGTAGCACTTGTGCATCCCCAACGCTCTCCTCAGGTTGTGGTTGAACCTGATTTGGAGGTGTATGATATCCGTGTCCGACAGGGCTGGTCTGATGTCGTGTTGGGTTATCTTGAAATAGAGGGCGTTTTGTACCGTCCAGGTAAAAACGCCATTCCTTGCGAGAGGTGCAGTGATGGGTTCCCCTGTGCGTGAATCCATGGTTGTGGCAGTCGATGTGGACGTATATTGTGCAACCGCAGTCTAGATCAATTCGCTTCCTGCGAATGATTTTCTTCTTCTTCGCTGCCTTGTGCGCTATCTTGACGTCCTGTGTACAATGGTTGGGATAGGAAGACGAAGATTGCATTCTTCAGTGCCCAATTTTTGAGTGTGGAGTTCTTCTCCTCATCGAGGTACTCTTTATAGCTTGAAGTTGGGCCTGGATTGCACAGGAATATGGTCGGTATGCCACCCTTGACCATTGTGGGCTTGCCGTATTTGGTGTTTGATTTCCAGTTGGATTGGCAGCCCATGAATTCCTTGAAGTGCTTGAGATAATGTGGATCTACGTCATCAATGACGTTGTACCATGCGTCGTTGGAGAAGTCTCTCGGAGAGAGATCAATGTGACCGCAGATGTAATTATGCGGTCCTAATGACCTTGCCCAGAGAGTTTTACCCGTACGACTATCACCTTCAACCACTATGCTTATCGGTCTAATTGGCCGCGCAGCGGAATGAACAACGTTATCGCACGCCCATTCCTCCATCTCTTCTGGTACCCTATCAAACGATGAACAAGTAAATGGACATTGAAATTGTGGTATGGGTGGGGGAAATAACCTGTCTAAATTGGCTGTGATGTTGTGGTACTGTAATAGGAATGACTTGGGATCTTTTTCTTTTAGTACAGTGAGGGCCTGTGATTTGTCGCCTGTGTTGATTGCTTCGGCGTACGTGTCGGCTGCCGTGCTGCCGCCTCGTCTAGTAGATCTTCCATCGATCTGGAAAACTCCATGATCAATGACGTCCCCGTCTTTCTCCATGTAGGTTTTGACATCTGAGCTTGATTTAGCTGCCTGAATGTTTGGATGGTAATGTGTTGTCCGCACTGGAGAGGTGAGGTCGAAGAATCGGTTGTTGGTGCAGACGAATTTGCCTTCGAATTGGATGAGGACGTGGAGGTGTGGTTGCCCATCTTCGTGCAGTTCTCTGCATATGCGTATGAATTTTTTGTTTGTTGGTGTTGTGGGGTTTTGCAGTTGGGCGAGGGTTTCTTCCTTGGTTAGTGTACATTGTGGGTATGTTAGGAAGTAATTCCTTGCTGATATGCGGAATCGTCTGGTTGGTGGCATTTTCGCAATTTTGGGAGTGTCACCGATTCGTTTTGGGTGTCACCAATTGCCTTCTATCCATATGGTTTGGTGACTGGTGTACAATATATAGAAGTACTAGTTCTATAATAGTACCTATGCGGATGGGTGCCTTCGGATTTGGATCTGCCATGATACACGTGGCGGCCATCCGT

Gene Information

NCBI Accession AUT11869.1
Location 163-486
Protein Name movement protein
Coding Region ATGTGGGATCCATTATTGCACGATTTTCCGGAAAGCCTCCATGGCTTTCGGTGTATGCTTGCTGTAAAGTACCTTCTTTGTGTCTCGTCTCTGTACCCTGTACAGTCTGTGGGGTTCGAGTTGCTGAGGGATTGCATTAGTGCGGTGCGCACTCGTTCGTATGACGAAGGGTCGTGTAAGTATAGTGCCCTTTGTGCGAAGGTTAGGTCCACGTCTGAAGGGGAACTCACCCAGACGAGGACCCCGCTATGTTGTTGCCCGCACTGCCCCCGTCATATCGGCCGTGACCGAGTGGAAACGGAGACCAAGGAACCGGAACCCTAA
Protein Sequence MWDPLLHDFPESLHGFRCMLAVKYLLCVSSLYPVQSVGFELLRDCISAVRTRSYDEGSCKYSALCAKVRSTSEGELTQTRTPLCCCPHCPRHIGRDRVETETKEPEP

NCBI Accession AUT11870.1
Location 323-1087
Protein Name capsid protein
Coding Region ATGACGAAGGGTCGTGTAAGTATAGTGCCCTTTGTGCGAAGGTTAGGTCCACGTCTGAAGGGGAACTCACCCAGACGAGGACCCCGCTATGTTGTTGCCCGCACTGCCCCCGTCATATCGGCCGTGACCGAGTGGAAACGGAGACCAAGGAACCGGAACCCTAAGTCGTCTAAGAAGGATGTTGTTCCTTTCGGCTGCGAGGGTCCTTGTAAGGTTGAATCGTTTTCTGATAGGTATGAAGTGAAGCATACCGGTACTGTTTGTTGTTTGTCTCAGATTTCCCGTGGGAATGGTTTGAAGCAACGCATTGGGAAGAGGATTACTATTAAAAGTATTTACTTACTTGGTAAGGTGTGGTTGGACGGTAGTAACCGCATTTCCAATCATACTAATGTCTGTATATTTTTTGTCGTTAGGGATAGGCGTCCTTCTGTTACTCCTATCAATTTTGGTAGTTTATTTGATATGTTTGACGGTGAACCTGCTACGGCTTCTGTGAAGTCGGATCACCGTGATAGGTTTCAGGTGTTGTATCGTTTTCAGGTTTCTGTGTCTGGAGGGCAGTATTCTAGTCGTGATCAGACAGTTTTCCAGAAGTTTGTGAACCTCAATCATAGGGTTGTTTTTGATAATCAAGATGATGGTGTTTACGGGAATCATGATCAGAATGCGCTTCTTGTTTACATGGCTTGTTGCCATTCTACTAATTGGCTGTATTCTAGTATGAAAGCTAAAGTGTATTTCTATGATTCTGCAATGAATTAA
Protein Sequence MTKGRVSIVPFVRRLGPRLKGNSPRRGPRYVVARTAPVISAVTEWKRRPRNRNPKSSKKDVVPFGCEGPCKVESFSDRYEVKHTGTVCCLSQISRGNGLKQRIGKRITIKSIYLLGKVWLDGSNRISNHTNVCIFFVVRDRRPSVTPINFGSLFDMFDGEPATASVKSDHRDRFQVLYRFQVSVSGGQYSSRDQTVFQKFVNLNHRVVFDNQDDGVYGNHDQNALLVYMACCHSTNWLYSSMKAKVYFYDSAMN

NCBI Accession AUT11872.1
Location 1084-1488
Protein Name REn
Coding Region ATGGATTCACGCACAGGGGAACCCATCACTGCACCTCTCGCAAGGAATGGCGTTTTTACCTGGACGGTACAAAACGCCCTCTATTTCAAGATAACCCAACACGACATCAGACCAGCCCTGTCGGACACGGATATCATACACCTCCAAATCAGGTTCAACCACAACCTGAGGAGAGCGTTGGGGATGCACAAGTGCTACCTCAATTTTCGCACCTGGACCCGCCTACAGCCTCAGACATCGCGTTTCTTGAGGGTCTTTAGATACCAAGTTCTTAAGTTTTTAGATTCATTAGGAGTTTACAGTTTAAACACGGTTATTAGAGCTGTGGATCATGTGCTGTACGAGGTGTTAGAGAACACCATATCTGTAAACGAAGAACATGATATAAAATATAAACTTTATTAA
Protein Sequence MDSRTGEPITAPLARNGVFTWTVQNALYFKITQHDIRPALSDTDIIHLQIRFNHNLRRALGMHKCYLNFRTWTRLQPQTSRFLRVFRYQVLKFLDSLGVYSLNTVIRAVDHVLYEVLENTISVNEEHDIKYKLY

NCBI Accession AUT11873.1
Location 1229-1636
Protein Name TrAP
Coding Region ATGCAATCTTCGTCTTCCTATCCCAACCATTGTACACAGGACGTCAAGATAGCGCACAAGGCAGCGAAGAAGAAGAAAATCATTCGCAGGAAGCGAATTGATCTAGACTGCGGTTGCACAATATACGTCCACATCGACTGCCACAACCATGGATTCACGCACAGGGGAACCCATCACTGCACCTCTCGCAAGGAATGGCGTTTTTACCTGGACGGTACAAAACGCCCTCTATTTCAAGATAACCCAACACGACATCAGACCAGCCCTGTCGGACACGGATATCATACACCTCCAAATCAGGTTCAACCACAACCTGAGGAGAGCGTTGGGGATGCACAAGTGCTACCTCAATTTTCGCACCTGGACCCGCCTACAGCCTCAGACATCGCGTTTCTTGAGGGTCTTTAG
Protein Sequence MQSSSSYPNHCTQDVKIAHKAAKKKKIIRRKRIDLDCGCTIYVHIDCHNHGFTHRGTHHCTSRKEWRFYLDGTKRPLFQDNPTRHQTSPVGHGYHTPPNQVQPQPEESVGDAQVLPQFSHLDPPTASDIAFLEGL

NCBI Accession AUT11871.1
Location 1536-2624
Protein Name replication associated protein
Coding Region ATGCCACCAACCAGACGATTCCGCATATCAGCAAGGAATTACTTCCTAACATACCCACAATGTACACTAACCAAGGAAGAAACCCTCGCCCAACTGCAAAACCCCACAACACCAACAAACAAAAAATTCATACGCATATGCAGAGAACTGCACGAAGATGGGCAACCACACCTCCACGTCCTCATCCAATTCGAAGGCAAATTCGTCTGCACCAACAACCGATTCTTCGACCTCACCTCTCCAGTGCGGACAACACATTACCATCCAAACATTCAGGCAGCTAAATCAAGCTCAGATGTCAAAACCTACATGGAGAAAGACGGGGACGTCATTGATCATGGAGTTTTCCAGATCGATGGAAGATCTACTAGACGAGGCGGCAGCACGGCAGCCGACACGTACGCCGAAGCAATCAACACAGGCGACAAATCACAGGCCCTCACTGTACTAAAAGAAAAAGATCCCAAGTCATTCCTATTACAGTACCACAACATCACAGCCAATTTAGACAGGTTATTTCCCCCACCCATACCACAATTTCAATGTCCATTTACTTGTTCATCGTTTGATAGGGTACCAGAAGAGATGGAGGAATGGGCGTGCGATAACGTTGTTCATTCCGCTGCGCGGCCAATTAGACCGATAAGCATAGTGGTTGAAGGTGATAGTCGTACGGGTAAAACTCTCTGGGCAAGGTCATTAGGACCGCATAATTACATCTGCGGTCACATTGATCTCTCTCCGAGAGACTTCTCCAACGACGCATGGTACAACGTCATTGATGACGTAGATCCACATTATCTCAAGCACTTCAAGGAATTCATGGGCTGCCAATCCAACTGGAAATCAAACACCAAATACGGCAAGCCCACAATGGTCAAGGGTGGCATACCGACCATATTCCTGTGCAATCCAGGCCCAACTTCAAGCTATAAAGAGTACCTCGATGAGGAGAAGAACTCCACACTCAAAAATTGGGCACTGAAGAATGCAATCTTCGTCTTCCTATCCCAACCATTGTACACAGGACGTCAAGATAGCGCACAAGGCAGCGAAGAAGAAGAAAATCATTCGCAGGAAGCGAATTGA
Protein Sequence MPPTRRFRISARNYFLTYPQCTLTKEETLAQLQNPTTPTNKKFIRICRELHEDGQPHLHVLIQFEGKFVCTNNRFFDLTSPVRTTHYHPNIQAAKSSSDVKTYMEKDGDVIDHGVFQIDGRSTRRGGSTAADTYAEAINTGDKSQALTVLKEKDPKSFLLQYHNITANLDRLFPPPIPQFQCPFTCSSFDRVPEEMEEWACDNVVHSAARPIRPISIVVEGDSRTGKTLWARSLGPHNYICGHIDLSPRDFSNDAWYNVIDDVDPHYLKHFKEFMGCQSNWKSNTKYGKPTMVKGGIPTIFLCNPGPTSSYKEYLDEEKNSTLKNWALKNAIFVFLSQPLYTGRQDSAQGSEEEENHSQEAN